Array 1 29009-27786 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGO01000050.1 Ligilactobacillus agilis strain UMNLA1 Lagilis10B1S5LR1contig36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 29008 30 100.0 35 .............................. GCTTGTAGGCTAGCCTTTTCTGCGTCTGATAATGT 28943 30 100.0 36 .............................. TGACTTTTTTGCTGATATGTCAAACAGGGAGCAATG 28877 30 100.0 36 .............................. CATTTTTCACGCGCTGATGTGGCATGTGATATTATC 28811 30 100.0 38 .............................. TTGAATGGTTGACCTGGAAACCCCGCACATTTGTTCAG 28743 30 100.0 36 .............................. TTCTTTACGTATGTAAAGTATAATGGGTTATACTTG 28677 30 100.0 35 .............................. TGTAGTAGCCCAATTCTGATACTTTCTTTCTAAGT 28612 30 100.0 37 .............................. AACGATTTTAATAAAATTCAAGAAAACATGGCTCAAA 28545 30 100.0 36 .............................. CATGATTTTGGCTACGCCTGGATATTTAACATAGCC 28479 30 100.0 36 .............................. AAAATTAAGGTGGTCAATTGATAGAATTACAATCGT 28413 30 100.0 35 .............................. GTAAATAGGCAACCTCTCCATTTTGCCGTTTTCTT 28348 30 100.0 39 .............................. CTGTTGCCCCATCGGAAATGGTCTACCGCTCTTAGACTT 28279 30 100.0 37 .............................. TATTTTAACGTCTGACAGCTCAAAAAAGACAAAACGC 28212 30 100.0 37 .............................. CCGGATAACCAGGTGGCTGAGTTAATGCGAGCTGTCG 28145 30 100.0 37 .............................. TTTTTAAAACCTCCTGTTACAATAGAAGGGCAGAATT 28078 30 100.0 35 .............................. AGCCTTTGGCTTTCGTGCGATATAGCTACGATACT 28013 30 100.0 35 .............................. GCAGCAACCAGAGCGCTGACCAACTCTGACTTACC 27948 30 100.0 35 .............................. TACGACATGGATGGGACGTTTGGCATGTACTGGTC 27883 30 100.0 38 .............................. CCATAACCAAACTGACGCGTATGTCTTAAAGCACTCTC 27815 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 100.0 36 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TACCAACCTTTTAAACTATGGTGGTGATTTTAAGTGTATATAATTTTAGTCTATGATATTGCATTAGATCAAAATGGTGCTAAAGTTTTAAGGCATGTTTTTAAAATTTGTAAAAAATACCTTAGTCATGTTCAAAAATCTGTGTTTGAAGGGGAGCTTACTAAATCACAGTTAAAGAAATTAACGATTGAATTAAGGAAATGGATTAGAGATGATAAAGACTCTGTAATTATTTTTAAAAATCGTAATAAGAAATGGCTAGATAAACAGTTTTTAGGAATGGATATGTCTGATGAAACTTCAAACTTTTTCTAATTATTTATCTGTCGACCATAGATAAAGCAAATTAGGGGTAACATCGACAGATGATTAAAAGCCCGAAATATCAAGGGTTGAAAGAAAATGAAGGAGAAGGTAATATATGACTGTAGGTGTAAATAAGGTGATAGACAGAATATATGGATTAAGTTATTGATAATACAAGGCTTTTAAGGTGTAGT # Right flank : GATGCAAGCTGACGGTGAAAAGTATTCGCTTCGGTACGGGAAGTCACAAAAAGAAATTGCCGATGCTTACTTGGAACTAGTTAAGCGTGATTACTCTGGCAAACAAGCCCTTGGAGCAATGAATACAGAGCTACAAGGTTCGATTGCGTCAGGTGATGACTTTAAAGATGTAGTTGAAGTAGCTTTCCAAACTCTGGAAGGCTTTGGGATGACTGTTGATAAGAACGGTAAGCAGTTATCATCAACTAAAGAAATGACCGTTCAGACTAAAAAAGCAGTTAATACCCTAGCATAATCGGCTAATGTAACATCAACTTCGTTTCAGTCCTTAGGGGTTGGGATGTCCTATGTATCATCAACAGCCCACCAGGCAAAATTCAGTCTAGCGGAAACGGCGAGTGCAATGGGTGTGCTATCGAATGCAGGTTTAGAAGCAGACAAGGCTTTGGTAAAACTGGCCGCTTAGCGAGTAATCGCTTTGAACAAGCATTTTGTTAATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1686-1844 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGO01000039.1 Ligilactobacillus agilis strain UMNLA1 Lagilis10B1S5LR1contig26, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 1686 29 100.0 36 ............................. ATGTTGAAGATGAGTAGGTTGCGTAACGGGTCTTTC 1751 29 100.0 36 ............................. TAAACCGTTTCAGAGTTAAGTTTGACCTCCTGTAAG 1816 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 3 29 100.0 36 GATCTATTTAACTTAAGAGGAATGTAAAG # Left flank : GGAATTTGAGGGATAAAAATTTATGAAACTTATCCGGAATTATTTGTATAATGCAGGATATCAGATGTTAGCACTAATAATTCCATTTATTACAGCTCCATATATTAGCCGGACTTTAAAACCCCATGGAGTGGGGATTTATGCCGATACAAATGCTTGGATTCAATGGTTTGTACTGAATGCTTTTAGGATAAGCGTCATCATGCTTCTTAGTTTACTGAACTTTTTCTCGTAAGAAATTTTAGCTGCAAAATTGTTTGCATATGGAGTGTTGTGGTGAAGTACATTTTTTACTAGTTACATTTTGTTATAGAGTGCTGGCATCTGTCGACCTAAGATAAGGTGAAATAGTACTGGTATCGACAGACTATAAAAAGGTTGATATTATAGGCCTTGAAAGGATTTAGGGAAAAAAGTAATATATAACTGAGGGTGGAATTTGGTGATAGACAGAATGTATGTGAAAACTAGTTGGTGGTACAGGGTTTTGGTAGTGTAGA # Right flank : GATATTAGGTGCCTCTACTTGAGAATGCTGCTATAAATATAACCAGCCTATGATTGAATGCTCTCGTTTCAATCATAGGCTGGTTTAGTTAGTTATCGTTGTGGTAGTAATTAATCAATTCTTCATAGGTGTCGAGGGGCTCGAAATTGAGGGTCCACTCAACTAAGGGCATATCCTCGGGGGTCAGCTTATAGGCAATTTCATTTGGATCTAGGTAGACGGCTTCGGGGTCAGGTAAAGCTTCTTGCATCACTTGGCCAAAATATTCACTATTCTCGTCTGTCACCTTAACTTCCTTGCAGCGGTGCTTAGTAATGAAGCACAGTTCAGGCATTTTTAATAAGTCCAAGGTGAAATCCTGGTGATTCAAGTGGATATGTGCTAATAGCTGGGTGAAGCGGTCGTGCGTTGAATTTAGCTGGTAATCAAATGAGTAGTTAAGGGCGGGAAGCAGGTTTTCATCTGCTGGGTCCAATCCGACTCTATCAGCCAAATAATAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTATTTAACTTAAGAGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 4269-4894 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGO01000039.1 Ligilactobacillus agilis strain UMNLA1 Lagilis10B1S5LR1contig26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4269 30 100.0 35 .............................. TATTATCTTCATTCTCTGATTCTAAGTGAACAATT 4334 30 100.0 36 .............................. ATTTTTGACCCCGTGAATCCATCCCAACCACCATTT 4400 30 100.0 37 .............................. TGCGCCAACACCCGTTGTTAGCTTCAAAAAATTATAA 4467 30 100.0 36 .............................. ATAGCTTTGAAGAACTGTGTTAGTTTCCATTGGAAC 4533 30 100.0 38 .............................. GAACCTTGCTTGATGGATTAACATTACTTGACGAAAAA 4601 30 100.0 35 .............................. CATGCACAGATTATGTATATTGCTAATGATGTATT 4666 30 100.0 38 .............................. GAGAATGCCCGTTTACTCTTCAAATCTTTAAAGTCAAG 4734 30 100.0 36 .............................. CCGGCTTGCTTTTGTTTGAATTTCATCTCACTATAA 4800 30 100.0 35 .............................. GTTGCTGAAATTACTTTAAATGCAATGAATTTTGC 4865 30 86.7 0 .................A......A...TG | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 98.7 36 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TTGGCAGAGTGGTAATGCACCGGACTCGAAATCCGGCGAACCGGTAACACCGGCGCGCAGGTTCAAATCCTGTACTCTCCTTAGGTAAAGTTTCATAGTGTTTTAGGGTGTTATAATCGTTGATATATCAAGCTTTATGTTTTATAAACGTTTTGTAATGTAATGCTTTTTTAGGAAAAAGTATCCTAACAATTATAATAACTTGCCCTGGTGAGTATCGTATATTTTATATACGGTATTTTTTTATACTCTCTTTTTGTTTTTAAAAATATGCAAGTGAGATAGGTATAACTTGTAATGTTAAAAAAACTTCAAGTATACATCTGTCGACCGTAGATAGAGCAAAATGAAGGGGACATCGACAGATGATGAAAAAGTTGAAATCACTGGGCTTGAAAGAGTTCACAGAAAAAAGTATTATGTAGATATGGGGACAAAAGTAGTGATAGACAGAATGCATGTGGAAACTAGTTGATAGTACAGAGATTTTAAAGGGTAGT # Right flank : GATTGAAGAAGTTGAGTATTATATATGGAGAATTAAAAAAAGACATGGGTAGTTGATGGTTATACATGGCTACATTGTCCTGTATGTGGTGAAGAGGTTATGGATTATGATATTTGTGATAATTGTGGATGGCAAAATACAAGAATTATAAATCATGATGGTGGACCTAATCATATGATACTCGAAGAAGTCAAAAAAGCTTATGCTGAAGGACGCAAGATTAATTAATGTCCAGTTATGCAAAGATAGTGTTATTTGGGCGAAGTGTATTATCATTTTGAACTCAGTCTCAGGACTGCTGCCGTAGTTTTTCTAGTGTTGTAATCGAAGTAACAGAATAACAATTATCAAGATAGAATAGGAATATAGTAACATGATGTTTCTACAAGAGTTAGTCAGTTAAATTAGCACTATGATTATAAGCTTAAAAGGAGTATTGGAATTTGATATGTTAGAAGTATCCTTATTTAAACAGAGTTATTTTTATGAAAAGTATAAAA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //