Array 1 172607-172099 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYC01000077.1 Pseudomonas sp. EGD-AKN5 Scaffold_79, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 172606 28 96.4 32 .....A...................... CTGATGCCGTACTGGTTCGCCGCCAGCGGCCG 172546 28 96.4 32 .....A...................... TGGGAGGGAAGGTCCTAGTCAGCGCCGCATCG 172486 28 96.4 32 ............A............... TACTACTGGTCGAGCACGCAGCGCTCCGCCAA 172426 28 96.4 32 ............A............... TTGCGCGCCTGGATATCGGCGTAGGCCTCGAT 172366 28 100.0 32 ............................ AAACAGATGGGGCATAAGGATTTCACGATGCT 172306 28 100.0 33 ............................ CAGTAGTCGAACGGTAGGTCAGCCCCGTCCTGG 172245 28 100.0 32 ............................ AACCTGCGCGGCGCCTACCTGGGCGGCGCCAA 172185 28 89.3 32 ............A.....C........G TTCGCGCTCAAAAAGTACCGCGGCGGGATCGA 172125 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 96.8 32 CTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGCGCTGGATTCGTTGATGGCGCAACCCTGGTTATCCGGCATGCGCGACCACCTGCGCCTGGGCGAACTGCTGCCGGTTCCCGCGGGGGCGCAGCATCGCCAGGTCCGCCGCGTGCAGGCCAAGAGCAACCCGGAGCGCCTGCGGCGGCGGCAGATGCGCCGACATGGCTTCAGCGAAGAAGAAGCCAGGCAACGCATTCCCGACAGCGCCGCCCGCCGGCTCGACTTGCCCTACGTCCAGTTGCGCAGTCAGAGCAGTGGGCAGCACTTTCGTCTGTTCATCCACCACGGCCCTTTGCAGAGCCAACCGGTGGCCGGGCACATCAACCGCTATGGGCTGAGCGATGGGTGTACTGTTCCCTGGTTCTGACCCTTTTTTCCGGGGCATTCTGTACATCTTGGAAAATCAGTCACTTACAAGGGCCGTCGAAAAAAGGGATAGATGAGCTTAATGGCTGGTTTTCCTTTTAGCCACAACGAGTTGGGAGCTTGAGCCTCTA # Right flank : GCACCGGACACTCGGAAGAGCATTCCTGCGCGCCTCATTGCCGTACAAACAGACCGGCGCCCAGTCGTCTCCGCGCTGCCTGTTGCCTTACTCGGCATAGCCCTCGGCGATGTGCTGGTCCTTCAGCTTCACGTAGTTGCCGGCGGTATAGGCGAAGAAGGACCTTTCCTTGTCGCTCAGCGGCCGGGCCTTCTTCGCCGGGCTGCCGACGTAGAGGAAGCCGCTTTCCAGCACCTTGCCCGGCGGCACCAGGCTGCCGGCGCCGAGGATGACTTCGTCTTCTATCACCGCGCCGTCCATGACGATGCAGCCCATGCCCACCAGCACGCGGTTGCCGACGCTGCAGCCGTGCAGCAGGACCTTGTGGCCGACGGTCACTTCGTCGCCGATGGTCAGCGGGAAGCCGTCGGGGTTGTAGGGGCCGGCGTGGGTGATGTGCAGCACGCTGCCGTCCTGGATGCTGGTCCGGTTGCCGATGCGGATGCGGTGCATGTCGCCGC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : CTTCAATGCCGTGTAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 182019-181571 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYC01000077.1 Pseudomonas sp. EGD-AKN5 Scaffold_79, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 182018 28 100.0 32 ............................ AGGAACGCCAGGGATCCGTCGGTGAGCAGCAC 181958 28 100.0 32 ............................ CACTTCTCCCACAGATCCAGGCGGTGCGGCCA 181898 28 100.0 32 ............................ TTGCGAACCGGAATATGGGCGACGCAAAAGCA 181838 28 100.0 32 ............................ AAGCGGCGTAGTTCGCCAGCCAGGGGCTTCCC 181778 28 96.4 32 ............A............... ACATCGTGGCGCACCACGGCGATCAGGAACTC 181718 28 96.4 32 ............A............... AGCTCCCTCAGCTTGTTGGTGTCGGTCATGGC 181658 28 100.0 32 ............................ ATGAACGCCAAACTCCAACGCGCTCAAACGAC 181598 28 67.9 0 .........T..A.......T.CTTCCC | ========== ====== ====== ====== ============================ ================================ ================== 8 28 95.1 32 CTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GCGCCAGCAACTCGCCGACGCCGTCGAACACCCGGTTCTCGTACAACCCGGTGTCCTTGAAACGCACCCGGTAATGGTTCACCGCCTCCCAGGCCCGCGCCTCGTCGAAGCCATAGGTGCTCATGAAGCACTGCAGCAGCGGCGGGCCGATGAAGTGCTCGAGCCGGCGCAGGTCCGGCTCGTCGATGCCCAGCTGCGCCAGGGCGTACTGGATCGAACGGGTGATGCCCTCGCGCGGGTCGGTGAGGGTGCCGTCGAGGTCGAAGAGGATGTTCTGGTAGTGCATGGGCGAGGCTGCGGCAGGAAGAATCGAACCGGAAGCATACAACTGGCCTCCGTACCTACCAAACGCCCATGCAATGACTTCCTGCCCTTTTTCTGAAGCCTCTTGCGAGTCCCATGAAAATCAATGAGTTGGAGAGGCCCCTGGAAAAAGGGTTATGCGTGTGGATAGGGTGCTTTCTCGTGGGAAGTCAGGGGGTTGAGGAGTAACATCTCTA # Right flank : ATGCCAGGCAGTCAAGCAAACCTCCCTCATTCCCTTCCCCCGCATGCAGCAGTAGCATCGCGCAATAATCCCGCTTCGGCACCCGCGACCATGGACGAATTCGCCCCTTCCGACCTGAAGACCATTCTCCATTCCAAGCGCGCCAACCTGTACCACCTCCAGCACTGCCGAGTATTGGTCAAGGGCCTTCGTCTCGGCCATGCGTGGCGATACGGAGCAGGACTTCCGCCAGAGCTGCCTCGAAAGCCTCACGCGCACCGAGTCCCTCGACTTCATGATCGAAACGCTCAAGGCCGTGGCCGATACGCCGGGGGAAGGCAGTCGGTGAACGTACTGCTGATCGCGCAATGCGATAAACGCGCGCTGGCCGAGAGCCGGCGCATCCTCGATCAGTTCGCCGAGCGGCGCGGCGACCGCACCTGGCAGACGGCGATTACCCAAGCCGGCCTGGACACCCTGCGCCGCCTGCTGAAGAAGAGCGCACGGCGCAACACTGCCGT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : CTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //