Array 1 269001-265590 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLLG01000004.1 Streptomyces sp. CWH03 Contig004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 269000 29 100.0 32 ............................. ACCGCCCGGGGCAAGGGCCGCAAGGCCACTCC 268939 29 100.0 32 ............................. GAGTCGCGGGCCCTGCGGGGCCGCTTGAAGCG 268878 29 100.0 32 ............................. TCCGCCACTTCGTCGTACTCGGCCCAGCTCAG 268817 29 100.0 32 ............................. ATCTGCCGCATCAAGGACCTCCCCGACCTGTA 268756 29 96.6 32 ............................T CAGGTCAGGCTGTGACTCGCCGCTGAGGAGTC 268695 29 100.0 32 ............................. GAACCGTGCCGCCCGCGACAGGTCGGCGTCGG 268634 29 100.0 32 ............................. TCCGCCACTTCGTCGTACTCGGCCCAGCTCAG 268573 29 96.6 32 .....T....................... ATCTGCCGCATCAAGGACCTCCCCGACCTGTA 268512 29 96.6 32 ............................T CAGGTCAGGCTGTGACTCGCCGCTGAGGAGTC 268451 29 100.0 32 ............................. ACCGCAGGGGGCGCGGCCGGGCGGAGCGTCGG 268390 29 96.6 32 ............................T TCTGCATCTCCTCCGGGGAGGGGCGCAGAGAC 268329 29 100.0 32 ............................. TCGATGCCCTCCTTGCCCAGCTCGCGCTCCAG 268268 29 96.6 32 ................T............ CCGCGCCTGCCCCCGTGGCCGCCCCTGGCTCC 268207 29 100.0 32 ............................. GAAGAGAAGGTCACCGAAGAGGACGAGCGGCG 268146 29 100.0 32 ............................. AACACGCCCGAGAAGGGGGCCCGGAAGGGGTT 268085 29 100.0 32 ............................. TCCCCGGCGTCCCGCCCGTGTTCTGGGCAGTA 268024 29 100.0 32 ............................. ACCAGCCCGACTACGCAGAGTGAAAAAGCTGT 267963 29 100.0 32 ............................. CACCTCCTGCGCGACGACCGGCTGAGCTACTG 267902 29 93.1 0 ...........................TG - Deletion [267874] 267873 26 89.7 32 ---.......................... GTGATCAGGCGGGGTTCCCGGGTGGCCGGGGG 267815 29 100.0 32 ............................. GAACGAGGCGGCCTCGGGCGTGAGGGCCGCTT 267754 29 100.0 32 ............................. GGCGCCGCCGAGCTGATCCCCCTGGGTGTGTT 267693 29 100.0 32 ............................. CCGCTGAGCGACTACATCCGCCACGCGTCCTC 267632 29 100.0 32 ............................. CGCTGACCGACGACCAGTAGGAGCAGCAGATG 267571 29 100.0 32 ............................. ACCCCCTCCGCGGAGGGAGACCGGTCGGGGGA 267510 29 96.6 32 ............................T CCGGCGACCACCTCGCCGCGCAGCCGCTCGAG 267449 29 96.6 32 ............................T GACAATGACGACACGGAGCGTTACGTCAGGTG 267388 29 100.0 32 ............................. GGGTACCAGCCGTGGGACAACCTGGGCCTACC 267327 29 96.6 32 ............................G GAGGGGGCCGACGCGACGATGGGCCAGGCGAC 267266 29 100.0 32 ............................. TTGTTCGACCCTGATGCTGTTGAAAGCGTGAA 267205 29 96.6 32 ............................T CACCCTGCGCACGGGAGCCATTCGAGTCCCGG 267144 29 96.6 32 ............................G GAGGGGGCCGACGCGACGATGGGCCAGGCGAC 267083 29 96.6 32 ............................T CACTGCGCTGCGTGAAGCAGCATCCGCGAAGG 267022 29 100.0 32 ............................. ATCGGGATCAACACCGATGAGCTGACCCACGG 266961 29 100.0 32 ............................. GGCCGGGCGCCGGCGCCGGCGAGGAGGTGGCG 266900 29 100.0 32 ............................. CGCACCAGCAATGCGGCCGCGCTGGTCGACTG 266839 29 100.0 32 ............................. CACACGTCCGTAATCGAGCGACACGGACGGAT 266778 29 100.0 32 ............................. CGGCACCGCGTCATGGAGATCAAGGCCAAGTC 266717 29 100.0 32 ............................. ATGTCACCGTGCTCGCCCCGTCCGGGGGCGGT 266656 29 100.0 32 ............................. GCCGTGAGTTCTTGGATGAGGTGTGGGACTAC 266595 29 96.6 32 ............................T TCCGTACAGCGGACCCGAGTTGGGGAGATCAC 266534 29 100.0 32 ............................. GGCCGGGCGGGCGGGCATCGGCAGGCCGGTCG 266473 29 100.0 32 ............................. CACCACGACACCCAAGGAGACCCCCATGGCCA 266412 29 100.0 32 ............................. AAGTACCGGTGGCAGCGGATCGAGCGCGATGA 266351 29 100.0 32 ............................. GTCGACCACCTCCTGATCTCGCCGTCCGGGGT 266290 29 100.0 32 ............................. ACGGCCCACCTGGAACACCGCCACCCCCGAAG 266229 29 100.0 32 ............................. GGCGACGAGCCGAGCAGGCCGAGGCCACCGTG 266168 29 93.1 32 ...T........................T CACCGAGCCCGCCGAGCTGACCCACGCCCGGA 266107 29 100.0 32 ............................. CTCGGGCGCCCGGTCCGGGCCGGGTACGCGAT 266046 29 100.0 32 ............................. CCGAACGAGGACCGCATCGTCACCGCCGCGCT 265985 29 100.0 32 ............................. CAAAAAGACGAGCCGCGGTAAACCTTATTCGG G [265968] 265923 29 100.0 32 ............................. TCCTCGGCCAGGTCCCGCACGTTGGGCATGCG 265862 29 100.0 32 ............................. GCGCCACCCGAACTCGCGTTGGTGCCCATGCG 265801 29 100.0 32 ............................. CCGCAAACTCTCTGCAGTTCCTTCCGTGCTCT 265740 29 93.1 32 ........A...................T CATGCCGGCCGCGGCGACCGGGACTCCTTCAA 265679 29 96.6 32 ............................G TCGTCGTGACCGGTCTGCGCCTCGAAGGCGAC 265618 29 89.7 0 ...........G............A..T. | ========== ====== ====== ====== ============================= ================================ ================== 57 29 98.5 31 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GGCGTCAACTACGGCGGAGGGGACGACTACGGGGACTCCCTCTGGTGACCGTCATCGTCCTCACCAACTGCCCCGCCGGTCTCCGCGGCTTCCTGACCCGCTGGCTCCTGGAGATCTCCGCGGGCGTCTTCGTGGGCAACCCCTCGGCCAGAATCCGCGACCTGCTCTGGGAAGAGGTCCGGCAGTACGCGGGCCAGGGCCGGGCCCTGCTGGCCCACACCACGAACAACGAGCAGGGCTTCGCCTTCCGCACACACGACCATGCCTGGCATCCGACCGATCTCGAAGGCGTCACACTGATCCGCCGCCCCGACCCGACCACACCGCCCCCGGCGGCGACTCCCCGCAGCGAACCGCCATCGGGCTGGAGCAGGGCCGCCAAACGCCGCCGCTTCGGCAGGAGCTGACGCCGCATTATGGCCCACATGTCGGATTCGCCGGAAACTGTGAAAGTCCCCGGAAACCGCCCCCGTCGCCGCTAAACCCCCAGCTCAACCAGT # Right flank : AGCCCTGCCGGCTCCGTGCCTGCCCCGCTCCCGGGCTCCCCGGCTCCCGTGCCCGGAGGGCCCGTGTCAGCACTCGATGATGTTCACCGCCAGCCCGCCCCGCGCCGTCTCCTTGTACTTGACGGACATGTCCGCGCCGGTGTCCCTCATGGTCTTGATGACCTTGTCGAGGGAGACCTTGTGGCTGCCGTCGCCGCGCAGCGCCATCCGCGCGGCGGTGACCGCCTTCACCGCGGCCATGCCGTTGCGCTCGATGCACGGGATCTGGACGAGTCCGCCGACCGGGTCGCAGGTGAGGCCGAGGTTGTGCTCCATGCCGATCTCCGCGGCGTTCTCGACCTGTTCCGGGGAGCCGCCCATCACCTCGGCGAGCGCGCCCGCGGCCATCGAGCAGGCCGAGCCGACCTCGCCCTGGCAGCCGACCTCGGCGCCGGAGATCGAGGCGTTCTCCTTGAAGAGCATGCCGATCGCGCCGGCTGCGAGCAGGAAGCGGATCACTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 278777-281064 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLLG01000004.1 Streptomyces sp. CWH03 Contig004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 278777 29 100.0 32 ............................. CTGTACCGCGGTCGGGCGGACTCGCAGACCTA 278838 29 100.0 32 ............................. GGCGTGCAGAACGCCGGGCGCCGCCACGGCGA 278899 29 100.0 32 ............................. ACCGCGTTCGGCGTGGGCTGGGATCTCGTTGG 278960 29 100.0 32 ............................. CCCAGCCCCCACCGGACCCGGTGCCCGAGGAA 279021 29 100.0 32 ............................. GGCCGAGTCGCCTGGGTGGCGGAACACCTGGA 279082 29 96.6 32 ........................A.... ATCTCGTAGGGCTGCGTTTCGACCGGGGCCGG 279143 29 100.0 32 ............................. TACGTGTGCGGGACGTGCGCGGGACACGGCGA 279204 29 100.0 32 ............................. ACCGGCAGCAAGGTGTACGCCGACAGCCCCGG 279265 29 100.0 32 ............................. GTCTGCCGACCTGGTGGCGGCTGCGAGCTTGA 279326 29 100.0 32 ............................. AACCCGAGGCAGCTGCGGGCCAAGTCGTGCGG 279387 29 96.6 32 ............................T GGCGATTGAATCGGGTCTCGGGTGGACCGCGT 279448 29 96.6 32 ............................A TAAGTGCCCGAGGGGACGGTGCGATTCCCAGT 279509 29 100.0 32 ............................. GACTGCGGGTATGCCGTCGGCGTGGGCTGGCA 279570 29 100.0 32 ............................. CCGCTGAGCGACTACATCCGCCACGCGTCCTC 279631 29 100.0 32 ............................. GGCGTCGACTACAGCGGCAACCCCGACGAGGA 279692 29 100.0 32 ............................. ACCCAGCTCAAGCCCACGTTCGAGCCGGTGCT 279753 29 100.0 32 ............................. GTCGGATACGGCTCGGTGTGGACCGGGCTCGG 279814 29 100.0 31 ............................. GGTCCCCATAAGGGACGTCGAACCCCCGGAA 279874 29 96.6 32 ............................A GAGGCCCGAGTCAGCTCATTGACGCTGGAGTA 279935 29 100.0 32 ............................. ATGCCGTCGAGCAGCCCGTCCTGCATGATGGC 279996 29 100.0 32 ............................. GCCCTGGTGCCGATCCTGCTCGGCCTGGCGCT 280057 29 100.0 32 ............................. ATCATTGTTGTAGTAGATCTGCACGGGGTCCG 280118 29 100.0 32 ............................. GCCGACGGCGGCCCCGAGGCCAAGCTCGGCTC 280179 29 100.0 32 ............................. GCCCTGGTGCCGATCCTGCTCGGCCTGGCGCT 280240 29 100.0 32 ............................. TGTCGAGGTCGATCAGGGGGACGGGCCGCAGT 280301 29 100.0 32 ............................. GGCAGGCCGCGGCCGGCCCGAGCCCAGCACAC 280362 29 100.0 32 ............................. CACGAATCGACGAAGGCCCCGGACGGCAGTCC 280423 29 100.0 32 ............................. GGCAGCGTGGGGGACATCGTGAAGGTCCGGAT 280484 29 100.0 32 ............................. AGCTCGTCGACCTCCGCCGGGGTCATCTCGGG 280545 29 96.6 33 ...............A............. CGTGCCTTGCGCGCGAGGGTGGTCAGCCGGAAC 280607 29 100.0 32 ............................. ACCGGAGCCCGGCGGTGCGGGCCCCGGAGGGG 280668 29 100.0 32 ............................. TTACCGGCGCTCTACGGCCGCCCCGCCCCGTG 280729 29 100.0 32 ............................. GCCATGCAGGGCTCCCTGAGCTCAGCGGGTCT 280790 29 100.0 33 ............................. GAACCCGCCGACTCGATCACCACGTCGAACTAC 280852 29 100.0 32 ............................. GCACGCCGCGGATCCGTCGGCACACTCCTGGA 280913 29 100.0 33 ............................. CGGGTGGCCCGAGTATCGGTGGTGATGAGGCCG 280975 29 100.0 32 ............................. CCGGCGTGGCCGTTCATCTGCCCCGGACCTGA 281036 29 96.6 0 ........................C.... | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.5 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TGACAGGCGAACGCCGGGGTGGCCTTGCCGATGTCGTGCACACCGGCGAGCCAGCCCGCGAGGGCGCGCGCGTCCGAATCACCGCGCGGCAACGCCTCGGCGATCAACCCCCTCACGCCCGCGGGCAGCCACCGGTCCCACAACAGGCGAGCCACCTCGGCGCTGTCCTCCATGTGCCGCCACAGCGGCAACCAACCGTCGGTGTCGCGGTCATGCTTGGCCCACACCGACCGCGCCGGGCCCCCGAGCCGGGGCAGCATGCCGAGACGGGTACCCTCCCCGTTGCTCATGGAGAGATTGATACACGCGCGGCCGGGCTCCGCGCACGGAAATGGAGAATCGCATCCATCCAGGTGATATCAGCTGGTAGACCGATCCCCTGACGCCCGGTCCACCGAATCAGCCGAGACAGGGGAATGCACAGAATGACCAATATGCCCGACTCTGCAGAAGTAGGTGGAACGAGGCCTGCGCCGCGGTGAACTACCAGGTCAACGAGG # Right flank : CTGCTCCGGGCCGGACTGCGAGGGCGGGGTGCCTTCGGGGAGCACGGGGCCGTCGGGGAGGATGGAGGGATGAGCGACGCGGTGGCACGGATACTGGAGGCGGCGGCACGGGACGAGTTCCCGCCGCCGGACGGGGGTACGACGGTGGTGCCGCAGCCCAGCCCGCGGGACGCGGGGGTACTCGCCTTCACCGCCCACTCGGTGGTGTTCACGGATGAGGATCCGGTGTGGGTGCGGAAGGCCCTGGCCGCGGCGGGGAGCGATCCGCTCTCCGCGAGCATGACGCCCGGTTTCCTGAGCGCGCTGACGGCGAGGACCGGCCGTTCGGTGAACACCGTCGACCTGCTCACGGTCGCCGCGGCCCGGACCGGGGACCCAGGCCTGGAGCTGAGGGAGATCACCGACCCGGACCATCCCCGGGTCGCGCGGGCGCTGAAGTTCCGGGACGAGGTACGGGTGTGGGCCGCGGACGGCGGTGTCCTGGTGCTGGGCCGGGGCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //