Array 1 624670-624037 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013050.1 Thermococcus barophilus strain CH5 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 624669 30 100.0 37 .............................. CTGCGCCGTCGATAGCACTGTTTATTCTTGCTGGATT 624602 30 96.7 37 C............................. CACATATATGTCGAATTTGCTGGGTTCTGAATTGCAT 624535 30 100.0 38 .............................. CACATGAGTGCTTTTTGATACCTGCAGTCCCTCAGCAG 624467 30 96.7 36 C............................. CCTTGGAGCATGTCATAGACGTTTACGGCTTTGTCC 624401 30 100.0 37 .............................. CTTCCCTCTTCCTAATCTTTCTCCTCTTGGCGGGCTC 624334 30 96.7 37 G............................. CACATGAAGGCACATTAGCCGCTGAACAAAACGGAAG 624267 30 96.7 34 C............................. TGTGTAATCGAGTAATTACATATGCGCTTGTGCG 624203 30 96.7 38 A............................. CTTACTGTTTGGTCTGGTATGTGATCAATCTTTAGAAA 624135 30 93.3 39 G............................T CATTGAAGATATTGAAAAAGACAATGAGCTATTGTTCAA 624066 30 93.3 0 G............................T | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 97.0 37 TTTCCAATAAGACTCCAAGAGAATTGAAAG # Left flank : TTTGTCCCATTTAATATTTTTGAAAATTTTTCGATCCTTGCTGGGGTTTTAGTTTTTGAAATTCTTTGGCCTTAATTTGCTTTAATTTCAAAATGAGGGTTTGTGAGTGGTTTGGATGTTTTTAGTAATTGTTTGTTGTTAAATTACTTTGCGTTGCAAATTTTTGTTAAAATTGTAACGTTTTGAATGTACACATTTGGATTTAGGATCTTTGGGACTTCTTTGATATGCTTTCCTCATGGAAACTTGACCATCTTAAAATTAAAGATCAGAGAGGTTAGATTTTTGGATTTCAAAGTGTGAGAAGGTTTTGGAACTGCTACGGGCGTTGTTGTGCATTGGCTGGAATCATAAAAGGAACCGCCGATTGGGGTAGTGGAGTGATATCAGTACGCTAATTAGAGGGTTATCTTGGCTTTGTTATTGACCCTTCGGCAAAAAGCTTTTATAATTCAAGCGTTTTTATACTCTTATTGGGGAAATAAGGCAAAATCCCGCCC # Right flank : GAGGCTATTGGCAGAGCGGCAGGTAGAGCGGCTGGAGGTTCCAATGAGACCCTAACTTGAAACCGTTTCTTCTCTCGCTTTATTATGGAATTTGCTCTTAAGCTAAATGTTTATATTTTTGAAGTTGCACTTCATTTGGGATGAAAAATGCTGCCTGTTGGAAAAGTTCCGCCAGAGAAGCTTAGGGATGTAGTTTTCAAGCACTTGGGCGTTCGAGGAGAAAGAGTATTGATTAAGTCTGGCATTGGAATTGATGCTTCAGCAATTGATTTCGGTGATAGCGTTCTTGTTGCATCCACGGACCCAATAACAGGTGCAGAAAAGCATATAGGATTTTATGCTGTCAATATAAATGCCAACGATGTCGCAACCTTTGGAGCAAAGCCGAAGTGGTTTCTGGTTTCAATTCTTCTGCCCGAAAATGCTGATGAAAAACTTTTGAAAGAGATAATGTCTGATATTGATAAGAGTGCAAAAAGCCTTGATATCGCAGTAATTGG # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCAATAAGACTCCAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 2 683138-682446 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013050.1 Thermococcus barophilus strain CH5 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 683137 30 100.0 37 .............................. GTGGACTTCAACCTAACGGAGAAAACCGTTTATGAGA 683070 30 96.7 35 A............................. CATCAATTCTGTATGGGATACTTGCGGCTTTGGGG 683005 30 96.7 36 A............................. CACTATGGAAAAAGGGCTTTTGTTGGGTAGGAACAT 682939 30 96.7 36 G............................. CTAATCTTACTGATAAGCCTACCAACATGCTTTGGA 682873 30 96.7 36 A............................. AGCATATACGTAAAAATTCCAAAATTAAAAAGGGAA 682807 30 100.0 36 .............................. ACTCTTTCGGCGGAAGCGCCTCAACGTCAAGCTTAA 682741 30 100.0 36 .............................. TTTAATCGCTCAGAAAGTCAGAAAGAGCGAGCTGAT 682675 30 100.0 35 .............................. ATTGTTCACAACCTCAGTTTTCACAGCAAGATAAG 682610 30 96.7 38 C............................. ACCTTTCCTATCGAATATAAGCGCTGCATAGTCCTCAA 682542 30 96.7 37 G............................. CTTTTCTGTGGCTTTTTGTCTTTCTTCTTGGCTCATT 682475 30 93.3 0 G............................T | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 97.6 36 TTTCCAATAAGACTCCAAGAGAATTGAAAG # Left flank : AGAGTACTATTATGTTGACTGAAAAACTTTCGCTTCTCATTATCTTCTCTGTTTTTGTAGTTTTTGACTGTTAACTCTAATTAATTTCAAAATGAGGGTTTGTGAGTGGTTTGGATGTTTTTAGTAATTGTTTGTTGTTAAATTACTTTGCGTTGCAAATTTTTGTTAAAATTGTAACGTTTTGAATGTACACATTTGGATTTAGGATCTTTGGGACTTCTTTGATATGCTTTCCTCATGGAAATTTGACCATCTTAAAATTAAAAGCCAATAAAGTTAGATTTTTGGATTTAAAGGATTTTTCAAATGTTGGAGTTCTCTTGGATATTATTGTGCAGTAAAAAATTGGACTCGTTTAATGGTTATATACCTCAAGAGAAAACACTAATGTCTCCAAATCTAAAGCTTGTTTTGGCTTTGTTATTGACCCTTCGGCAAAAAGCTTTTATAATTCAAGCGTTTTTATACTCTTATTGGGGAAATAAGGCAAAATCCCGCCC # Right flank : ATACTTCACGCTTTTGCAAGCTTTTGTGTAGTAAACAAACATTTTTAAAGTACTCTTGTCTTACAGACATTTAGGTAAGCCTAAATTCTGGGGTGATGGTATGGAAGCAGTAATAGCAGAGAATGTCAGCATTTACTATGGGAACTATGAAGCAGTTAAAGGACTAACCTTTAAACTCCATGAGGGTGAAACTCTGCTCCTAATGGGGCCCAATGGTGCGGGGAAAACAACTCTACTCAGAACATTGGCTGGATTCCATAAAGAATACACTGGAAAGCTGTTAATTTTTGGTAAACCGCCGCATGAATCTAAAGACCTAATCTCTTATGTACCTCAAAGCCATTACCTAAATGAGAGAGTTCCCCTTACAGTGCTTGAAGTCGTTGCAATGGGGCAAATCTATAAAAAAAGTTTTGTACACTTTAAAATCCCAAAGGAAATTCTAAAATCTGCAGAGGAGGCACTGAGCTTTGTTGGGCTGGAGAGTATAAAAGATAAGC # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCAATAAGACTCCAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 3 1301658-1303400 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013050.1 Thermococcus barophilus strain CH5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 1301658 30 100.0 38 .............................. AACAATTCAAACAGCAAAGAACGCTACGCAGGTGGTGA 1301726 30 100.0 41 .............................. TATAAATAAGTGAGGGTCCAGGCTTAGCAATCACATGAAAA 1301797 30 100.0 35 .............................. GTGAACGTTGTATCATCAATTGAGAAGCCTGAGCC 1301862 30 100.0 36 .............................. AGGGTATTGTCGGGAAGATGGGGGCGATGTTCAGCC 1301928 30 100.0 39 .............................. ATTGGGTTGAATGAACCAGTTCTGTTCGTTGGGACGTGG 1301997 30 100.0 37 .............................. AGCTCAAGAGGGGGTGTTATCTGATGGGATTAACAAA 1302064 30 100.0 39 .............................. CAAGTTTTGTAGCTCCTGCTCCTGCTTAATGCCTAACTT 1302133 30 100.0 37 .............................. TAATACATCTTTATTGTAGTTTGTGAACTTCCAGGAA 1302200 30 100.0 39 .............................. CTGGCTCCTTGTTCCAATAGAGCCAAGCCGCTCCTGCAA 1302269 30 100.0 37 .............................. GAGTTTTGCATTCACACTCACTTCTACAGCGAGGAGT 1302336 30 100.0 36 .............................. GTGCTGTGTTGGTAAATCCAAGCTTTACTTCGCCCT 1302402 30 100.0 37 .............................. CAAAGACCTCCTCGGGTGTCGGAGTATCCCCGTTTAT 1302469 30 100.0 38 .............................. AGGCTTATGAGGTTCTACAAGGAATTAAGGGAGATTGA 1302537 30 100.0 36 .............................. CGAGGATCACTATCTAAAAGCTCGGTGCTCAGATTG 1302603 30 100.0 44 .............................. GAGATTAAGGAGATTTTGGAAAGAACACAAGACTGGGATCCAGA 1302677 30 100.0 38 .............................. ATTTCAAAGCTCTTTGCTTCCATTCTTCTCTTTCCCTC 1302745 30 100.0 47 .............................. GTCGTGTTTGTTCTCACGAAAAAGAACCGCAGCCTCGTAGTAGGAGG 1302822 30 100.0 38 .............................. AAGAAAAGCCCAAAGAATTATTGCCCGTAGAACCAGAG 1302890 30 100.0 43 .............................. GAGGAAGAAGAGAAAAGTAAAGAAGAAAAACCGCCAGAGACAG 1302963 30 100.0 38 .............................. AGCTTGCGGGCTTTTCTTGCAACATCAACAATACGCTT 1303031 30 100.0 38 .............................. ATGAAAATTGCTTTGTAAATCAGCCGTTGGAGGGAATA 1303099 30 100.0 37 .............................. CGATTACTATCACGAGCTGATGATGCAATACGAAGAC 1303166 30 100.0 38 .............................. TTTCAGTCATTATGAGGACTTCCTTGAGTGGGCGCTCG 1303234 30 100.0 38 .............................. AGAGTCTCAAAGAACATCTCAAATGCTGAATTATATGA 1303302 30 96.7 39 .............................G CTTCTTATCACCGTTGTAGTGCTCCAAAATCTCTTCCCA 1303371 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== =============================================== ================== 26 30 99.7 39 GTTCCAATAAGACTCTAAGAGAATTGAAAT # Left flank : GTTGAAAAAGTCTGAAACGAAAATTTTTCGTTTCTTGGTGTTTTTCTTGTTTTTGCAGTTTTTGACTCTTTGTAGTCTTCTTTTCTGGAATGCTGTCCCATGAGTTCTCTGGAAGTCTTTAGTAATCAGTTGTTATTAAATTGCTTTGTGTTACGAGTTTTGTTGGATATTGTAACGTTTTGAATGCACATGTTTGGATTTGAGGGTTCTGGGGGCTTTTTTGATATGCTCTCCTCGTGGAAATTTGACCGTTTTGAAATTAAAGATTGGAGAGATCAGATTTTTGAAATTAGAGGGCTTTTTGGACGCTGGAGGTCTTGTGAGCATTGTTGTGCATTGGTAGTTTGGAGTTGTTGTGGGGGTTGTTTGTTAGAGTATAGTGCGAAAAACCCTCAAATTCAAGGCTTGTTCTCTCTGCATTACTAACCCTCCAGCGAAAAGCTTTTATAACCCAAGCGTTCTTATATTCTTATTGGAGAAATAGAGCAAAATTGCGCCCT # Right flank : AGACATGAGACAAAAGAATTAGGGGGTGATAAGTATGAATTGGGCTGAGAAATTATTAAAGTATGGTCTGCACAAAAAAGGATACTCAGAAGTTACTGCAGAAGAACTAATGATAGCAGAGAAAATAAGAAGCAGCCCAAAACCATTAAAAGAAGCATTGGATGATTTAGAAAGAATCATTAGAGAAGTCGGTTTAGAAGAACTGCTATAAGGTAATTAAAATACTTCAATGAGACTCAAAGAGGGCTTCCTAATCGGGAGCTAAGTCAAGGACAAATTGAAACCGAGCATAAAAAGTTAAATAAAAACCAAAAATTTCAGTCCTTTGTTGGCAGGTGTGGAATAATCCAGCTTAAAAAGCTGTCTAAGCTCCTTGTTTGAATATAAAGAGTCCCTGTCCCATAGAACTCCGCAACCAAACCTTCCCCACTTAGGAAGGTGCTTTTCAATCCCCCTACCCTTTTAACCCTGAAGTCTAATCCTTCGCTGAATGCAACCAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTCTAAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 4 1545343-1547002 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013050.1 Thermococcus barophilus strain CH5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 1545343 30 100.0 36 .............................. GTTTAACATGCTGCTCTTTCGCTCCGTACTTTTCAA 1545409 30 100.0 37 .............................. TTATACTCATCTCCAAAGACATTCGTAATTTTCACCA 1545476 30 100.0 37 .............................. GTATGTCTCCTTTTCGCCGTTTCTACGTTTCCACCAC 1545543 30 100.0 38 .............................. ACGACAATCAGCTTTTACGATGAGAATAATACTTTGCT 1545611 30 100.0 36 .............................. AGGTAAGTATAATATAGTAGTATTGCAAATTATTAC 1545677 30 100.0 39 .............................. GATGTGTTACGCGTACTCCTCACCCGCGGGGCTGTCAAG 1545746 30 100.0 40 .............................. TCTGCAAGTTTTAAACCAGTATGCCAGCCTAAGCCTTCAA 1545816 30 100.0 35 .............................. TGAACTGAGGGAGCTATTGAACAAATTGGATTTAG 1545881 30 100.0 38 .............................. GAGGAATCGTCGGGAAGATGGGGGCGATGTTCAGCCAC 1545949 30 100.0 38 .............................. GATCCGGACGAGGCTTTTTCGATAGAAACAGATCACGA 1546017 30 100.0 38 .............................. AGCTTTTGCATGACTTTCAAGACAATCCTGTACCCCAA 1546085 30 100.0 38 .............................. CAAGGCTATGAATTGAGAGAGGCAAATGTCAGAGATCT 1546153 30 100.0 37 .............................. GCGGTGGCATTCGTGATAGGAGCAACGCAGGGGTGAG 1546220 30 100.0 35 .............................. CTTCCAAGAGAGTTCTTTGAGAGCTTGCGTGAGAA 1546285 30 100.0 38 .............................. AACGGTTATATGCGGAGTCAAACACTTCGAGAAACTTT 1546353 30 100.0 37 .............................. GGATTTTATGAAACTCTCGTGAAAATCCACGAGAGCC 1546420 30 100.0 37 .............................. AGGCTCGAATCAATGGGGCTTGTTTCTACGCATGTAA 1546487 30 100.0 37 .............................. ACTTGAGCCAGAACGACACGGAACCTTGAGAGAGAGT 1546554 30 100.0 37 .............................. TGAGCTATTGGCTTAGTTGAATCATCGCCGTAAATCT 1546621 30 100.0 38 .............................. GACGATGGAATAAGCACGGTCGCCTTGGCGGAATGAAG 1546689 30 100.0 49 .............................. GTCGAATCCGTTGTTACCCCAACATCAACCGTAAAATGTTCCAATAAGA 1546768 30 100.0 39 .............................. AACATCACGGCCACCTCGGCTTGGGCTTTGCTGTTCTCG 1546837 30 96.7 38 ..................T........... CGTTATTTTGTGAAAATTCAGGGCGGGAGAGCTTAAAG 1546905 30 96.7 38 ..............T............... GAAGAACGTCGGCACTCTTTCGTATTCCTTCCAGTCCC 1546973 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ================================================= ================== 25 30 99.6 38 GTTCCAATAAGACTCTAAGAGAATTGAAAG # Left flank : TTCTTTCTTAATTTTGTCGAATGTTTTTTGATTCTTGTTTGTTTTGCTCCTTCTGCAATTTCCAGCTGTAAGAAATCATTAATTGTAGAACAGCAGCTTGTGGGTTCTTTGGATGTTTTTAGTTATTACTTGTTATTAAATTACTTTGTGTTACAGATTTTCCTCAAAACTATGGCGTTTTGAATGTGCACGGTTGGAATTGAGGATTTTCAAGGCTTCTTTGGTATGCTTTCCCAGAGGAAATCTGACCATTTTGTAATTAGAAGACAAAGAAGCTGGGTTTTTGAAATTAAAGGGCTTTTTGGACGTTGGAAGTCTTGTGAACATTTTTATACACTTTGTAAATTTGGGGAAGCAGGGAGTTTGCATCATGAAAGAGCTTACGAAATCACTTGAATCCAGGACTTGTTTTGGCTTTGTTATTGACCCTTCAGCAAAAAGCTTTTATAATTCAAGCGTTTTTATACTCTTATTGGGGAAATGGAGCAAAATCCCGCCCT # Right flank : TTACTGCTCTGATTGTGCAGTCTTGATCTGTTGGACAATTTCAATAAAACTTGTCTGTCTAAATTTCTCTTCTTTGACAAAGAACAGCCAGAAGTAGTGATGGTGGGGCCGCCGGGATTTGAACCCGGGTCCCCGGCTCCCGAAGCCGGAAGGATAGGCCAAGCTACCCCACGGCCCCTCGAGAATGAGGTTTAAAGAAAGTGTTATAAAGATTTCGCAACGAGAAATTGGACAAGGAAGGGATTGTCATGATCTCAATCATAGTCCCAACGTACAACGAGCGGGAAAACCTTGAGGAGCTTGTGAGTAGAATAAGCAAAGCGTTGGAGGATTATGAGTTTGAAATCATAATCGTTGATGATGATTCTCCAGATAAAACGTGGGAAAAAGCACAGGAATTATCGCAAAAATATCCGGTTAGAGTGATTAGAAGAGTAAATGAAAAGGGTCTCTCTTCTGCGGTGATTAGGGGGTTTAAAGAAGCAAAAGGCGATGTTTTT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTCTAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 5 1752181-1751606 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013050.1 Thermococcus barophilus strain CH5 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 1752180 30 100.0 38 .............................. TCTTCTTTCTCTTCTTCTTCACTTCTGCGGGCTTTGGC 1752112 30 100.0 38 .............................. TGCTACTTTTGCGTTTAATGCTAATATGTCAGCACCAA 1752044 30 100.0 38 .............................. TTTCGAGAACAAGCCATTTGACTGTCACACCAATAAGA 1751976 30 100.0 36 .............................. AGAAGACAACGCAATGCTTCATCCTCAGTTACTTTT 1751910 30 100.0 43 .............................. CTCTTTTTCAGTTCGTCTAATATTTCCTTTACTCTATTTTCAA 1751837 30 100.0 37 .............................. CAAGTGGATTACCCGAAGCTGTCCCACGCTGTACTGG 1751770 30 100.0 37 .............................. CTTAACATAGGTGGGTGAAAATGCCCGCCGCCGTCAT 1751703 30 100.0 38 .............................. TTGAAACACCACCAACATAAAGAACTCCGTTCGTAATT 1751635 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 9 30 100.0 38 GTTCCAATAAGACTCTAAGAGAATTGAAAG # Left flank : GGGGTGATTCTGAAGATTTTTCGATTTTTGTTGATTTTTCTGTTTTTGTGGTTTTTGATTTTTTGCAGTCTTCTTTTCTGGAATACTGCCCTGAGAGTTGTTTGGAGATTTTCAGTAATTAAGTAATTATTTGTTATTAAATTACTTTGTGTTACAAGTTTTATTGAAATTGTAACGTTTTGAATGTACATGTTTGGGTTTGGGGTTTTTGAGAGCTTCTTCTCATGTTCTCCTTATGGAAAATTGACCATTTTAAAATTAGAAGATGAGGAAGTTGGATTTTTGGGTTTTAACGCTTAAAAAGCCATTGGAAGTCTTATGCGCATTATTGTGCACTGGTGGTTTGGAGTTGTTGTGGGGTTTATCTGCCATGATATGGAGTGAAAAACCCTTGAATTCAAGGCTTGCTCTGACTGCATTACTAACCCTCCAACAAAAAGCTTTTATAATCCAAGCGTTCTTATACTTTTACTGGGGGAAATAAGGCAAAATCCCGCCCT # Right flank : ACAAACATAAAGTTCTTTAAGAGAAATTTTACGCCCAGTAGAAAGACTAACCTGTTCTCTGATATTAACAGAAAATGGAGAAAACCTTAAAGCTTTTCAGTGTGCAACATATGAAATAAAACCCACCGGAGGGATGGCAATGTTTGACGTGGTTGCAATAGGGAACCTCAACTACGACATAATAATGCTCGTTGACCGCTTTCCGGAATTCCATGAAAAGATTCCAGCAAAAAATGCCCACTTTGGACTTGGAGGAGCCGCTGGAAACACAGCAACATGGTTAGCCAATATGGGCCTTAGAGTGGGGTTCATAGGGGCTGTAGGAAAAGACGAAATTGGAGAAGCACACATAAACTTCTTCAAAAAGATTGGTATTGACACTAAGGGAATAAAAATTGTTGATGTTCCTTCAGGTGTTGCCGTGGCAATAATAAAGGGCGAAGATAAGAGAATTGTAAAATACTTAGGAGCCAACAAATACAGAGAGCTTGACTATGAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTCTAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 6 2052074-2052522 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013050.1 Thermococcus barophilus strain CH5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 2052074 29 100.0 42 ............................. TAGTACATAGTTGAGGAACAGAATAGCGGAATAGTAATCATG 2052145 29 100.0 39 ............................. AGCAGCAATGCACTCTGGCATATCATTCGAAGATGCCCT 2052213 29 100.0 40 ............................. TCCTAAATGTTTTAAAACATTTATTAGCCGTGTCTTCTCT 2052282 29 100.0 43 ............................. TAGTGCTGCTGTTATTCCGTGGCCTGTTCCAACATCCCAAACA 2052354 29 100.0 40 ............................. TACTGTAAACTGTTTTTAGTGTTATAAAAAGTTCTTTTCC 2052423 29 100.0 42 ............................. AAAATTTCTAGGATCTCTGGATCTTGTTCTCTTTCATTAGGT 2052494 29 86.2 0 .........TA...C............G. | ========== ====== ====== ====== ============================= =========================================== ================== 7 29 98.0 41 GTTTCAGAAGCTCATAGTTGAATGGAAAC # Left flank : GTAAAGCGCTGAAGGTACATTAGTGGTAATCTTGGATGACAAAAATTTAAAGGGTTTGCTGAGAGTTTTGAGAGTTTTCTCTTCTGTGATTACTTTGTTCTTAAAATAGGGGAAATTCAAGGCTTTTTAATGTTGAAGAGTTTTGTGAGTTCTGCTTTGAGCTGTTGGAGTGATTTTACCAAATCCCACTGGGAGATTTTTGGTCTTAAGTTTTGTTTTTAGATTTTAAGCTTTTACTGTTGAGACTTTTTCTGGTTGTAAGGCGCTGAAGGTGTGAGAGTAGTAATTCCCTGGAGGTAGTTCGGTTCTCGCAATCAATAAGTTTGGAGGCTTTGTTTGGTGAGTTAAGCTTTGTTTTTAGTCTTTTGCCGGTTTTTGAGAGTCTGGCACTTTTATTTGATGTAAAAGCTGTTGAAAAATGAAAACCCCTTACAGGACAGCAAAACTTATAAGGAATAAAATCCATAATGAAATCAGAGAATAAAGGTCCCGAGGGTATG # Right flank : CTTTTCTTATGGAAAGCTTTAACATCTGAAAATAGCGAAATATTTTTATCCACAACTTTACATAATAATATGGGTGCCTCTGATGAAGTATCCCCTCTTCATCACCCAGCATGGTGAGCTGAAGAGGGAGAGCAACTCCTTGGTCTTTTCTGGAGAGCTGATTAAAAAAGCAATACCACTTGCACAGATAAGTGAAATTCACTGCCTTGCAAGGGTTTCTCTCACAAGCGGTGCCATTGATATCCTTTCAGAAAAAAGCATTCCCGTCCATTTCTACACAACGAAGGGAGACTACAAGGGCTCATTCATAAACGATGCATCGCCAAGAGGCAAGCTCCACCTCAAACAGGCAGAGCATTATTTAAATCCCGAAAAGAGAGCCTACATAGCCCAGCAGATGGTCCAGGGGATTCAGAACAACATGGCGTTTACGCTCTCGAGATGGGGCATCAATCCCGTAAAGCTGAACTCGATAAGCGTCGAAGGTTCTTCAATGGAGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGCTCATAGTTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 7 2063198-2063850 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013050.1 Thermococcus barophilus strain CH5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 2063198 29 100.0 40 ............................. AATGTTTCGAGCAGCTCTTTAACTGTTATTCTTTCAAATA 2063267 29 100.0 38 ............................. TAAATGATTCCAGCTCTTCCTTAGTGACTATTGCTATT 2063334 29 100.0 36 ............................. TTCTTTCAACCACTTGTTTATTTCTTCTAAACTAAC 2063399 29 100.0 47 ............................. CGAAGTCAAAGAGTTCATTGCATCCGAAACGTTTGGGGTTAAAGCAG 2063475 29 100.0 38 ............................. GTCTCAATGTAGTTGTCAAAGTCGAATACTGCATTTAT 2063542 29 100.0 39 ............................. CCAAATCAACGTTACAGAATACAACAGCGAGGAAGTCGG 2063610 29 100.0 42 ............................. TTTCAAGTGCTTTATTCATTTTCTCATCACTACTGAACACAA 2063681 29 100.0 40 ............................. GTTAAATCCTCTGAGGTCGTCCAATTTTGGTTCTCCTCAG 2063750 29 96.6 42 ...................A......... CTCATTTGTCCCAACACCTCCCTCCCAACTTACCTTGATGAG 2063821 29 82.8 0 ........................ATTTT | A [2063839] ========== ====== ====== ====== ============================= =============================================== ================== 10 29 97.9 40 GTTTCAGAAGCTCATAGTTGAATGGAAAC # Left flank : TAAAGCGCTGAAGGTGTAGTGGTGGTAATCGTAAAACAGCAGGTATCCGCTGAATGTGGTAAGAGTTTTTAGGATTTTCTCTTACATAAAGGCTTTGCTGCAAAAATAAGTGTGCCATAAAGGTTTTCAACACGGAAAAGCCAAGCAATGTTTGTTCTAACTCAATAAAGCATTTTAGAAAAATCCCGCTGTGAGTTTTCCTGTTTTAGTGCTGATTTTTGGATTTTAACTTCTGTTATCCTGGACTTCTGTTGGTCGTAAGGCGCTGAAGGTGTTGGGATGGTAATACTGAAAAGCGGGTTTGGTTTTAACAATCCAGAGTTTTTATGAGCTCATTATGTTGGTTTGGGCTTATTCTGCTTGTGTTTTAAATTTCAAGTGATCTAATAATTTCATTTTGTTGAGATAGTGCTGTTCGTTGAAAATCCCTCACAGGACAGCAAAACTTATAAAGGATAAAATCCATAATGGAATCAAAGAATAAAGGTCCCGAGGGTATA # Right flank : TTAATAAAGTTCGTTTTAAAAAGCATTTAGAAAGGGGTAAAAATAAACGCTAAGCCTTAACAGTCCTGATGACCTCGATGGCTTTTCTCGCCTCTGGTTTAAGCGAAACCTTAACCCTGTCCCACTCCCAAGGATTCTTGCCCCTCCAGACCGCCTTGACCTCTCCAATTCCTGAAACACTCACCTTCCCAAACACAACGGCCGAAGCAAATATGAAGTCCCTGAAGTTCTCCCACCTGACGTGCTTCCTGATTTCTCCAAAGCCAACGTAGATCGGTGTAATGTCCCTGAGGTGCCTCAGGTTCCCAAAGAAGTTCTTGTCCGAAGTAAAGACTATCAATTCACCCTCGTTCTTCCTTAAAAACTCCACAAAGCTCTCAAGGATGACGTCATCGCCCCTGCCTTCCCTTGTCGGCTCGATAAGAATGGCATTCCTCTCGTTGAGGAACCTGAGCTGCAGTTGTCCGAGCTTGAAAAGCCTGTCCTTCGGCGACGGCTGA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGCTCATAGTTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //