Array 1 232487-232912 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHWY010000006.1 Bacillus altitudinis strain 179-K 3C3 HS NODE_6_length_251931_cov_373.428405, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 232487 32 100.0 33 ................................ AAACAAAAAAGCAGGTAAATATAGTTTTAGAGG 232552 32 100.0 34 ................................ CCTTGATATGTAAAATTTTCGGTAAGACGCAAAC 232618 32 100.0 35 ................................ GGTAAAGGTATAGTCATGGCGGGGATAAACGCAGT 232685 32 96.9 33 ...........T.................... AGCATCAGAGCTATGATGGCGGGTGCAGAACAA 232750 32 96.9 34 ...........T.................... AAAGTCATGCCCGTCAATGGCAGCATAACGAGTG 232816 32 90.6 32 ...........T..........AA........ ATTGATTCTCTATGTTCTGGTATTTCAATGGC 232880 32 90.6 0 ...................T..A....A.... | T [232909] ========== ====== ====== ====== ================================ =================================== ================== 7 32 96.4 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAGGAAATAGCCGATCAGTTAGGCGAAACAAGACAAAACATCTCAAACATTCACAAAAAAGCACTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGCACGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAGTAGACTGGCTGATTTACCAAGAGGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGGAACTGATGGTGCGAATGTCAGGTGAACATCAAATCCCCGGGACATTCGCACCTTTTTATTCAACAAAATTGAGAAAAAATGTATATTTTATAAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTGTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TTGTGAAAAACATAACTCTGCCTCTCAGTAGTCATGTATTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTACCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTGCTTTTCAATGGCTTGATACTTTAAAGGATAAGGTCGCACTCTACATGAGTGCGTGGATTGAAATCAAAATAGCTTGGTGAAAATATGATATAGCTTTCGGTCGCACTCTACATGAGTGCGTGGATTGAAATGGGACTTGCCGAGATCATGAACGAACAGCATCTAGTCGCACTCTACAT # Questionable array : NO Score: 8.93 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 233199-234039 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHWY010000006.1 Bacillus altitudinis strain 179-K 3C3 HS NODE_6_length_251931_cov_373.428405, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================== ================== 233199 32 100.0 34 ................................ TGCTTTTCAATGGCTTGATACTTTAAAGGATAAG 233265 32 100.0 35 ................................ CAAAATAGCTTGGTGAAAATATGATATAGCTTTCG 233332 32 100.0 34 ................................ GGGACTTGCCGAGATCATGAACGAACAGCATCTA 233398 32 100.0 34 ................................ CATGCATCATCCATCTAGCCGACTCATGGATACT 233464 32 100.0 33 ................................ AACCAGTAGCTCTCTATTGTCATTCCTCTGGTG 233529 32 100.0 36 ................................ ATTTGAACCAATTAAACCAGGAGAATATGAGGCAAT 233597 32 100.0 50 ................................ CTCATCAATTCTGATTAAGTCGCCCTCTTCAGCAGTCGCCCTCTTCAGCA 233679 32 100.0 33 ................................ ATATAAGGAGAGGGATTGCTCCCTCCAATTTGA 233744 32 100.0 35 ................................ TCCGCTAAGTGATGAAATGGAATTGAACAAATCCC 233811 32 100.0 33 ................................ AAAGACGTGCAAAGTTACCACGCTGTGGAATTT 233876 32 100.0 34 ................................ ACATTGTTAGCATTCCAGGAGAGCAGACGCACAG 233942 32 100.0 34 ................................ AGCGATGACAAGGCTCTCAAGCACATTGTATTTT 234008 32 75.0 0 ..........C.....A...A.A...CAC.G. | ========== ====== ====== ====== ================================ ================================================== ================== 13 32 98.1 36 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GAGTGCGTGGATTGAAATAGCATCAGAGCTATGATGGCGGGTGCAGAACAAGTCGCACTCTATATGAGTGCGTGGATTGAAATAAAGTCATGCCCGTCAATGGCAGCATAACGAGTGGTCGCACTCTATATGAGTGCGTAAATTGAAATATTGATTCTCTATGTTCTGGTATTTCAATGGCGTCGCACTCTACATGAGTGTGTAGATTAATAATTGTGAAAAACATAACTCTGCCTCTCAGTAGTCATGTATTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTACCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTTCTGCGTTTTATACAAATTCAAGTACTATCCAGTTCAAAATCTACACATATGAATAATTCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATTGCAACAAAAGGATAGTGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGTACCTCATAATGATCCTTGTATTTATCTACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCCTGTTTGGCAATTTTCATAATCTCAGTATCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGATAATCTCACCATTCATACTGCGTCCAACATGGAAAGAGGATTTACATTTCACAGCAATACGCCATTGTCTAAACTTCATTGTAGGCGAAATGATTATTTCCTCAATCTCAT # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 484126-483034 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHWY010000001.1 Bacillus altitudinis strain 179-K 3C3 HS NODE_1_length_829273_cov_310.564112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 484125 32 100.0 34 ................................ ATTACAGATTTAGACAATGAAGATGATGAATTTA 484059 32 100.0 34 ................................ ACTGTCTCACCGTCCTCTTTTTATACGCATTACT 483993 32 100.0 34 ................................ AATATCGGAATTAGTTACGAAAGACGAGGTTATC 483927 32 100.0 34 ................................ TCCGTCATCCCGTACTGAATAATCTCTACCTAAC 483861 32 100.0 33 ................................ TACGTTTTTGGATCAGATTATGATATAGAACAT 483796 32 100.0 34 ................................ CCTCTTCTACAGCAGGATTAAAGAATGGTTGCGC 483730 32 100.0 34 ................................ CATTCTTTCGCATCTTGAGGGCTACACACTTTGC ATGAGT [483712] 483658 32 100.0 34 ................................ TTATAGGAAGCGCAAGTAAAATATACCATCCTTC 483592 32 100.0 35 ................................ AAAAAGAACTGGCTAAACTAGGCCAAGTCGATCAA 483525 32 100.0 33 ................................ GCATAACTGCCAATTTAAAACAGATTTTAGGAA 483460 32 96.9 34 ..............T................. ATCTTGACTATAGTCTAAAGTACTCTCATCATAA 483394 32 100.0 33 ................................ TAATCAAATAATTTATGTAGTATCTACCCTCAA 483329 32 100.0 35 ................................ CATAATGGGAGCCGGATCATCTTCAAAGGGTTGGA 483262 32 96.9 33 .........C...................... CTGGGGCTTACGAGTTACGACTGATCAGCATTT 483197 32 96.9 34 ...........C.................... TTATTGTAATCGAATCGACCTTTAGCCCACAGAG 483131 32 90.6 35 ......T....C.......T............ AACAAAAACGATTTTAAAATTGATGCTGCTGCATC 483064 31 71.9 0 ........T..C......AAC-....C...GG | ========== ====== ====== ====== ================================ =================================== ================== 17 32 97.2 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TTTCTTTGGAAGTAGGGGGATGTTTTTATATGATGGTTGTGGTTACGTATGATGTCAGTACAATTGATAGAGCTGGGAAAAGAAGACTGAGGAAAATATCTAAAATTTGTCAAAATTATGGTCAAAGGGTACAACATTCTGTTTTCGAATGTATTGTAGATTCAACGGAGTTTGCTATGTTGAAGAATAAGTTGTTGCAAGCTATCAATGAAGAAAAAGATAGTATTCGATTTTACCAAATAGGTAACCAATATCGAAAAAAAGTAGAACAAGTTGGTGCAAAGGAAACAATATTTGTAGAAGATCCTTTTATTTTTTAGGTGCGAATGTGAGGTGCACATAGTTTCCCTGAATCATTCGCACTTAAAAAAGAAAGATTTTTCGACAAACTCTATCTTTATGTGTCTCAATAATTTATATTTTGTATAAATAGAAGTATCTTTTTTAACTGATTTTGATAAAAAAAGTAGTTTTATTTGTTTTTTTTACTAAAAATCGCC # Right flank : TCTAACTTATTATTTATGTTGAATTTTTAATGGATGCTAAATTATCATTCTTTTCAAAAGATAGTAAGTTTGCATATTTTTATTTCAGTAAAATTCAATAGGAGTTCAATAACCTCTTTTCCTTCAAATTTAAAGTGAAAGAGGTTTCAATGAAGATTGATCAGCCTATATATGCTGACAGCGTTTTGTTTGGCTTTTGTCATAAACAATGTACCTAGTTTGATGCTGCCCATCTATATACTTTCAATGATCGGGCTTATGTTCTGTCTCGTTCACATTGCGCTCCATTATCTACAGCGGATCAGATATTTGTTATACGATGAGAAACAATTGAAAGAGAATCAAATAAACAAACCTCCCGCTAAATGAAGGAGGTTTTTTACTTGTCTGTTTTTCAATGATTTTCTCGTTTGACTTCTTGAATTGTCTCAAAAGAGAGACGATGTTCCTCGTAAATCTGATTTGGACAATCAGTAAGAGCATAATGATCCACGAGCTAA # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //