Array 1 679989-681036 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030096.1 Pasteurella multocida strain 4407 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 679989 28 100.0 32 ............................ CGCCCTTGGCTTAGAAACGGTCGAAATTAATT 680049 28 100.0 32 ............................ TCATGGGAAATGAAAAAGAGCCGTTTAACTGG 680109 28 100.0 32 ............................ ATCAACGCGCACTTTTCCGCCGGGCAATACTG 680169 28 100.0 32 ............................ GTGAAAATTTTCCGTGAGTTTTCGCGCATTAG 680229 28 100.0 32 ............................ GCGCTTGTGTTTCTGTCGGGCGCAATAAGATC 680289 28 100.0 32 ............................ AAGTGAAAAGATAAAAGATAATCACCGTAGTT 680349 28 100.0 32 ............................ AGAACTTACTGAATTTGATATTAGAAAATCTT 680409 28 100.0 32 ............................ ATTTTTCACAACGCATCTTTTCCATTGCGATG 680469 28 100.0 33 ............................ GCACCACGACGGCACGCCACACTGGCACTTGTT 680530 28 100.0 32 ............................ CACTGTTTTTCTTTTGAGTTTGCCACCCTCAA 680590 28 100.0 32 ............................ TACTCCTTTGATAGTGTTTAAATGCCGTTTAA 680650 28 100.0 32 ............................ TGCCGCATTTGTTGGAATAATTCCCATCAGCT 680710 28 100.0 32 ............................ CCTAGCACGACGACATCACCACTTTTAACTGT 680770 28 100.0 32 ............................ CGATTTTTTAATCCTTCGTCAATTTCCACTTC 680830 28 100.0 32 ............................ ATCATAACTGCCTTTAATTAGATTAAAGCACC 680890 28 100.0 32 ............................ ATCTTGTAGTCGATGTGCTGACTTGAACTCTG 680950 28 100.0 32 ............................ TGAAATTTTGCGAAAACTGTTGGCAAAACTCG 681010 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.2 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTACTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTCA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAGTGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTAGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1898387-1897741 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030096.1 Pasteurella multocida strain 4407 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================== ================== 1898386 28 100.0 32 ............................ ACATAAAACACCTGTGTTTTTATACAATATTT 1898326 28 100.0 32 ............................ CTCGTTTTGTGGATTTGCTTGAGTTGGAACTT 1898266 28 100.0 32 ............................ GAACAAAGCAGTAGAAATAAGTGAAGAGCGTT 1898206 28 100.0 32 ............................ CAAACATTGTGATAAGCGAATTTAGAAACGCA 1898146 28 100.0 32 ............................ TCGTGTCAATTGGAAGATTATCAAAAATACTT 1898086 28 100.0 32 ............................ AATGGATAGCATTGCTTATTAGTGAAGATAAA 1898026 28 100.0 32 ............................ TTGCACAAAGTCAACGCAACCGCATCACAGCG 1897966 28 100.0 32 ............................ ATTTATCGAAACAAGATGACTTCTTTCACCGA 1897906 28 100.0 50 ............................ GTGTAGATGGCTTAGAAAGTTGGTGCGAATTTCACATCTAAGCTTGAAAT 1897828 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 1897768 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================================== ================== 11 28 99.7 34 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //