Array 1 3785-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBUC01000008.1 Acinetobacter ursingii strain NBRC 110605, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3784 28 100.0 32 ............................ ACCCCAGTAAGCGGTAGTTTCATACTTTTTGG 3724 28 100.0 32 ............................ TGTTACACGTCCTTGTCGCGTGGGTAATGAGA 3664 28 100.0 32 ............................ TATGTCCGTGGCGGTCAAGACGCCGAGCGTGA 3604 28 100.0 32 ............................ TAAGGTTGTTTTATTGCTTGTTCCAGAATCGA 3544 28 100.0 32 ............................ AGTTGTGTTTGTAACTCTTCAACGGTTGGCTG 3484 28 100.0 32 ............................ TAAAAGTGTTACCAACATTAGGCACAAATTAC 3424 28 100.0 32 ............................ GCAAACAATCATGCGAACGGCTGATGAAGTGC 3364 28 100.0 32 ............................ AATGGCTTCATTTAATTCTTTTACTGAATCAT 3304 28 100.0 33 ............................ ATTAAGTGAGCGATACAAGTAACCATTTTCAGT 3243 28 100.0 32 ............................ CGCTAGAGAGCGAACGGGAGCTTGTAATCAGG 3183 28 100.0 32 ............................ ATTGCTCCAACGCTTGCAACGTATTGCTCAGT 3123 28 100.0 33 ............................ TCCACATAGAAGTTACCGCCAGCTGCTAGACCA 3062 28 100.0 32 ............................ AAGAGCATTATATTTTAATGACACCTTTCTAA 3002 28 100.0 32 ............................ AGATCCTGAACCTGCACCCCATCGAATCAAGC 2942 28 100.0 32 ............................ TGTTGCAATACCGCCCAACGATGTTGAAGCAG 2882 28 100.0 32 ............................ TTCTTCATCAAAAGTTGGTTCTGCAATGCTTA 2822 28 100.0 32 ............................ ATAGAACGTATAACCATTGGCAACTAAAGTTT 2762 28 100.0 32 ............................ TGTTGCTCAAAAGGTTGGTGAACAACTAGGAG 2702 28 100.0 32 ............................ ACTTAGCGATTGTTCCAGTTACTTTGCCAACA 2642 28 100.0 32 ............................ ATTAGCCAAAAGTCTAATAATGTCTGCATAGC 2582 28 100.0 32 ............................ TTATCTTGAATCGATTTTAGGCAAGTCAAACT 2522 28 100.0 32 ............................ ACCAAGTAAAATTAACGATAGAAACAAGTACG 2462 28 100.0 32 ............................ TATAATTGGTTTCTATGGGTACATTAAACAGT 2402 28 100.0 32 ............................ TGTTGGTTTTGTATCAGTAAAAATTTTAACTC 2342 28 100.0 32 ............................ CAATTTACCCTCTGTTTTGAGCTGTATTCTGA 2282 28 100.0 32 ............................ ACCAAGTGGTGCAGATCGCCAAAGCTGTACAG 2222 28 100.0 32 ............................ ATCAGGATCATCATCCGCTGTCTTCATTAAAT 2162 28 100.0 32 ............................ GTGGTGATATTTGTCTAATGCCATGTGGCTTA 2102 28 100.0 32 ............................ ACTTAATGTTTTTCCTATCTTTCTTAACTATA 2042 28 100.0 32 ............................ GAACAAACTATTAAAACCCAATGGACCTATTA 1982 28 100.0 32 ............................ TGCTGCTGAAACAGATAATAAACCAAAACATT 1922 28 100.0 32 ............................ AGGTACAGACAATCTTCCAGGGCCACAGGACT 1862 28 100.0 33 ............................ TGTACCAGACTGTCCTAAAATTAAAGTTGCAAT 1801 28 100.0 32 ............................ ATCACATACTGAAAGTCATCAATGATGATGAT 1741 28 100.0 32 ............................ TTCGGGTTGCATGAAATAGTAATCACGCTTCT 1681 28 100.0 32 ............................ GCAACTGGAACTTCACCCGCTTCGATTTGTTC 1621 28 100.0 32 ............................ TTTAGCTTTAATTTTTGCACACTCGATTACCG 1561 28 100.0 32 ............................ TAATTAAAAAATGCCCCGAAGGGCATCCTTTG 1501 28 100.0 32 ............................ AATACCAGCAGTTGTATCCAAACTTTCAAAAT 1441 28 100.0 32 ............................ AGAATCCAAAAGGGCTTGAAGTTGTTTAGACT 1381 28 100.0 32 ............................ CACAACTAATGCAACAAACGTCCAGGCTTCTG 1321 28 100.0 32 ............................ TGATGGAACAGTAACAACTTGGTATAAAGATA 1261 28 100.0 32 ............................ TATAATTGGTTTTTTTGTTGTTCTGATTATTA 1201 28 100.0 32 ............................ TGAATGGTTGATGTAATCATTCGGATATCAGC 1141 28 100.0 32 ............................ AGTATGGCATATTGACGATGTATGTTCCTGAA 1081 28 100.0 32 ............................ TTTAAATCACGTTCAAAGATTTCTTTAGTCTC 1021 28 100.0 32 ............................ TGGTTTATCCGCTTCGGGATTAGGTAATAAAA 961 28 100.0 32 ............................ AACAAAAGTGATCCCGTCAGGGATTGCTTTTT 901 28 100.0 32 ............................ TCTAGCGATAAAGTCAACGGCACTTCATGCGG 841 28 100.0 32 ............................ CCACACCCACCAGTGTTTCATCATCGCTTAAA 781 28 100.0 32 ............................ TTTAGATACTGTAGCTCAACAAGTTATCTCTA 721 28 100.0 32 ............................ GCCAAGCGACCAACCTCCTAAACCCGCTGCAT 661 28 100.0 32 ............................ TATTATTTAAAATAGCCTAAGCAGATTTTTGA 601 28 100.0 32 ............................ TCCTAAACCCGCTGCATTTGCAGCATTCATTA 541 28 100.0 32 ............................ TATGATGAAATTTCTATTGATATCATCACAGA 481 28 100.0 32 ............................ TACAATTAAAATCCGCCCTGGCTATAAGTTGA 421 28 100.0 32 ............................ AAGTAAATCATTCTTGATGACCAACGATAAGC 361 28 100.0 32 ............................ CTGAAGCTAAGTCATCGATGGCAACATTAATC 301 28 100.0 32 ............................ AAACTGAAGCTGAATATTCAAAATCAAAATGA 241 28 100.0 33 ............................ ACCAGTTACAGGGGGGATAGGCGGGAGATTGAT 180 28 100.0 32 ............................ TTCTTGCACGATTGTTGTTTCTTCAACTCGGT 120 28 100.0 32 ............................ TTTTATGTGATATTCAAAATTAAACATATTAC 60 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 63 28 100.0 32 GTTCATGGCGACATACGCCATTTAGAAA # Left flank : TGGAGCAACTGAATTTAACTCATTGGTTCGCAAGGCTGCAAGATTATGTACATGTCTTATCCGCCCGTAAAGTTCCTGAGGATAAGATCAACGGCTATGCTGCTTATTTTAAAGTTAATCCAAAATTGACGGTTGAGCAGCGTGTTGTTCATCAGGCAGAACGCCGTGGAATTTCAATTGAAGAGGCACAGGAACACTTTAAAGCATTAGATCTAACGGAGACTTTTGAACCTTATATCAATATGAAAAGCCAAACCAATGATATGAACTTCCGTTTGATTATTGGAAAAAAACGTGTTGATGAAGCAAATATTGGAAAATTTGGAAGCTATGGATTAAGTCGTACATCTACAGTACCCGAGTTTTAACCCAATATTTTTTACACTCTTTAACAGCTTAATAAAATCAATAAGTTATAACTTTGCTTTAAAACTTTGGGTATTTTATACTTTTTAGAGGTAAAGCACTGTTATAACTTTATTTTTTGCTTTATTCTTACT # Right flank : ATTCCCACCAATGCGGATATAAGCCTGTTAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGACATACGCCATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCATGGCGACATACGCCATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 43483-42974 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBUC01000003.1 Acinetobacter ursingii strain NBRC 110605, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 43482 28 100.0 32 ............................ CATAAATTTGACCAACCCCCCTAGCATTGCCA 43422 28 100.0 32 ............................ TTGACCATTTCAGCATTAAATAAAATCGGACG 43362 28 100.0 32 ............................ ACAACTCTATTCGTTTTAATCGCGGCCGTGAT 43302 28 96.4 32 ....T....................... TCTCTGTTGAGTCGTAAGATTTGATGTTAATT 43242 28 96.4 32 ....T....................... GACCCAATAACGATTTACTGTTTCGTCCATTG 43182 28 96.4 32 ....T....................... AGAAAAAAATTACCAATCTCACCTTAATAGTA 43122 28 100.0 33 ............................ AATGACATCCATTGCTTTAAAGTACCAGCATTG 43061 28 96.4 32 .T.......................... ACCGTGTTTACGGATAGCTACGTCCATTGCAA 43001 28 85.7 0 ...................A....TTT. | ========== ====== ====== ====== ============================ ================================= ================== 9 28 96.8 32 GCTTCCTATCGCATAGATAGTTTAGAAA # Left flank : CTTAAAAATTCAGCTTTTTCACTTGGTAAAAGTTTTGCATCCAAAATCTCGGCATCTGCGGCCCATTCTAGAGAAAGCGTTTGTAAAACTAGCGCAGAGCTTTCTGCAAAATAATCTTCGGTTCCCTGACCTAAATGAGCATCGTATTGACGTAATGCAGTCACTCCAAAACGAATAAAATCACGAATTGTTGTTAATTTTTCTGCGGCTTCCTGTAATTGTTCAGGATTAATGGTCGGTCGCTCCACTCAGGGGTCTCCAAAAGATGATGATGCAAAACGGCTTATGATACCTTGTTTTGTCTTGCTTTTTAATGCCTAAAGCGAGTGGATTCAATTTTAAATCAAGTTGACTTATTGCTCTTTTTAAATCAATATTTTTCTTGCTCTTTAATAATATAATAAAATCATACGCTTATGATTTAACTTGTTTTTAAAGCATAATATCAAATTATTAAATTAACTCATTGTTATTAAATGATTTATTAATAAGAGTTTATA # Right flank : TTTTCGAGACTCCAAACATTTTGTTTTTAATTGCTGCATCGCTAAAGGATCCATTGGTGCAGTCATCATGGCGCGATAAGCCAAACATTCCTGCGTTTCTTCTGTTGCTTGAGATTTGGTATTCAAGGTATGACAACCCATCAGTCCAAAAGAGAAAATACATCCTAAAATAAATTTGATGAACATTGGATTTTCTATAACTTAGTATTTGCTGATATCAACTCAAATTTTAAAACGCAAAACAGCAAATAGAAACCTTTGAATAGACTTGTTTTATAAGTCCCTTTCATTCCTGCCTATGGAAGAAAAATAAAGAGGGTTTAAATAATGATGAAAGACGTCTAGTGTATAGATCTTTTAAAATTCGCTTATTTTCTTAAAATCTTCTGCCAATATATAAGCATTTTAAAAGATGAGCTTAATACAATGACAAATCCAGATATTCAAAAGGTAGAACTCGCAAAAGCCTATCGTTTACTTAATCATGGTCCAACTGTACT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCCTATCGCATAGATAGTTTAGAAA # Alternate repeat : GCTTTCTATCGCATAGATAGTTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: R [matched GCTTCCTATCGCATAGATAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 68424-62455 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBUC01000014.1 Acinetobacter ursingii strain NBRC 110605, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 68423 28 100.0 32 ............................ GAGCGCGTACAGATTGGGCGGTAATGCCACGT 68363 28 100.0 32 ............................ AGCGACTGCAATCTCTTGAATAGCTTTGATGG 68303 28 100.0 32 ............................ AAATAGTTATCTATGTCTCTGATTTTGTTATC 68243 28 100.0 32 ............................ GATAGCATGGCAAATGCAGTTCGGTTAGTCCC 68183 28 100.0 32 ............................ TATCTTTGTGCTCGAACAATTCATGTAATTCG 68123 28 100.0 32 ............................ AGAATCGAAAGCACCACTTAATACACTCGACT 68063 28 100.0 32 ............................ TGGAATGGGAAATTTGGATGGTGTCGCTACGT 68003 28 100.0 32 ............................ TACGCAGTAGACATCGATGGCTTTGATTTTGA 67943 28 100.0 32 ............................ TGAAAAAGCAGCAGCACATTTTAAGTGGCTAA 67883 28 100.0 32 ............................ AATGCGACTCGTAGTTAGAACGAGCCGATTTT 67823 28 100.0 32 ............................ ATTTGTTTTTACCAATGCCCCTACAGACTCAG 67763 28 100.0 32 ............................ ATGCGCTGAGAACGTGCCAACGGCGATACAAA 67703 28 100.0 32 ............................ TGCAAGTCAATAGCAACTTGTGTGTAATGATC 67643 28 100.0 32 ............................ AATGGTTAATGAAAATAAAATCACGGCGGCGT 67583 28 100.0 32 ............................ TGGCACTTGTGTTTTTCGAGTAGCCATAAAAA 67523 28 100.0 32 ............................ ATTAACATCTGCATGACCATAATTCTCTAAGC 67463 28 100.0 32 ............................ AATGCAGCTTTAGACAATGAAGCCGCAATTCA 67403 28 100.0 32 ............................ AATGGAAGGAAAAATATTGGGATGAAAATCGC 67343 28 100.0 32 ............................ GCCCTTAGACTCAACAATCTCAACAGACTCAA 67283 28 100.0 32 ............................ AGAACGCAATGCCAAGCCAAAACACCGATCTA 67223 28 100.0 32 ............................ GAACGGCTCAACAGATATTCAATCATTACTTC 67163 28 100.0 32 ............................ ATGCGCTGTGCCACGTTTGCGCCGCTTACCCA 67103 28 100.0 32 ............................ TTTTCCGCCGCTGCTGCTGCATCGGCTTCTGG 67043 28 100.0 32 ............................ TTGAGTCGGACGTTGATGAATCCCACGAAAAT 66983 28 100.0 32 ............................ GTGGACGATTCCAGATGCGGGGGTTCGTACTG 66923 28 100.0 32 ............................ TAGAAAATCAAAAGGTGCGGGGCAGATCAATA 66863 28 100.0 32 ............................ GTATGGGTGTATTCAATGATTAGCGGGTGCGT 66803 28 100.0 32 ............................ ATCTCTACTTACTTCAATTATTCCATCGATTA 66743 28 100.0 32 ............................ TCAGCCATTACACTTAGATAAATGGAACGGCA 66683 28 100.0 32 ............................ ATAAAACCACAAATTTATAAATCATTTTATGA 66623 28 100.0 32 ............................ TCATCTCAAGAAGACATTGATGCTTCTTATTT 66563 28 100.0 32 ............................ AATGCGAATGCTGCGGGTTCAGGCATTGATGT 66503 28 100.0 32 ............................ GTAGTTGAGAAAAACGGAAAAACTTCACTTGC 66443 28 100.0 32 ............................ TTGAATGGGTAGAAATGCCCACTGTGTTACCG 66383 28 100.0 32 ............................ ATCAACTTAACTTCCGTGATCTGATCGTCATC 66323 28 100.0 32 ............................ TTAGTGATTGCATGTACCAAGCCAAAAAAGGC 66263 28 100.0 32 ............................ AATTAGTCAAATATTCAGTTGAAGCTCAAGAT 66203 28 100.0 32 ............................ TAAACACGTTTATAACTTGTATAAATCCACCA 66143 28 100.0 32 ............................ AGACTATCGCAGTAGCAACATATCCAAAAATA 66083 28 100.0 32 ............................ AGAACCTGGAGTCGCTGACAGAAAGTTAATCA 66023 28 100.0 32 ............................ TTGATGTGACTTACTCGGCACGTTTTAGAAAT 65963 28 100.0 32 ............................ TAAGTTATTTAGCATGATTGATCTTGGTGCTG 65903 28 100.0 32 ............................ ATGGGTGATGAAGCGAAAAAGATTGATGACGA 65843 28 100.0 32 ............................ TCCACATAACACATCTTGCACATATCAATGGG 65783 28 100.0 32 ............................ ATTTAATAAAACATCTGTTGCTATACTTTCTG 65723 28 100.0 32 ............................ CATTCTTTTTACGAATAGTTTTTAATTCATCT 65663 28 100.0 32 ............................ ATGCGCCATTGAGAAGCGTTAGGGCCTTGAAG 65603 28 100.0 32 ............................ AAGAAGAAGATCGACTGGTTTATTTGAGTAGA 65543 28 100.0 32 ............................ GAATAACCCTAAATACGCTTCATGTCTACCAT 65483 28 100.0 32 ............................ TCAAAGATAGAATCTGACAAATAAGCAATTTG 65423 28 100.0 32 ............................ CAGCGATTTAATAAATAAACTGCTGCGTACTT 65363 28 100.0 32 ............................ AAACTTTAATGCTAAAGGAGCGAGTTGTTCCT 65303 28 100.0 32 ............................ TGACCGTTTACACGCTCAGGGTTTAGCCTTCG 65243 28 100.0 32 ............................ AACCGCATCTACAACTGGAATACCTGCATTAA 65183 28 100.0 32 ............................ ACGATCAACCAATATCACACGACCACTAGCTG 65123 28 100.0 32 ............................ TTTATAATATCATTTTGGTTAGTACCACCCGA 65063 28 100.0 32 ............................ TAATGGTGAGCGTTGCCAAGCAACACTAGCTC 65003 28 100.0 32 ............................ ATGTAGCCGATGGAAATGCTGTATGAAATGAT 64943 28 100.0 32 ............................ ATAAGACATCCATTCAGTATCCTCCAAGTGAT 64883 28 100.0 32 ............................ ATAAATGGAAAGACTCGAAAAATGTTGAACGC 64823 28 100.0 32 ............................ TCATATCGGTTCACACACTGGATGAATTGCTA 64763 28 100.0 32 ............................ ACACAAAAGAGCAAATTATTAACGCTTTAAAT 64703 28 100.0 32 ............................ CAAGGCTTATCAACAGGACTACACAAAATAAA 64643 28 100.0 32 ............................ ACCAGGAGGACGCAAAAAAACCGACTGGAACG 64583 28 100.0 32 ............................ TGTTAAATCGACCAAGTCAGGTCTCATTCGTA 64523 28 100.0 32 ............................ ATTTGCCAAAATTCTCCATTTGTAGGTATTGC 64463 28 100.0 32 ............................ AAACAAGTCAGGAAAATAAAATGACATTACAT 64403 28 100.0 32 ............................ AGAATCGTGACCGTTTCCGCGGGCGTTTTTCA 64343 28 100.0 32 ............................ ATCACGTACGAACTGCACACCGCGAAGTGAAG 64283 28 100.0 32 ............................ AGTAACGGTTTAAACGCTGAAACAGTATTCAA 64223 28 100.0 32 ............................ AGACGCATTACTTGTAACACCAGATGAGTTAA 64163 28 100.0 32 ............................ GCTAAAAACACGGTAATTGACAACATTAGGGG 64103 28 96.4 32 ........T................... TCAATGAGTGAAAGTGATGCTTGATCAAATTG 64043 28 100.0 32 ............................ CAATTTTCTGGTCAAGATGCGAATGCTGTATG 63983 28 100.0 32 ............................ TTAACATGCGTTTAACGATGACAACTCCAAAC 63923 28 100.0 32 ............................ ATCACTGGTGATATCCACCAGAGAAGCATCAA 63863 28 100.0 32 ............................ CGATGCAAAACACAATAAACGCTCGTATTTAA 63803 28 100.0 32 ............................ AGTAGCATAGCCTTCTGCCATACACACAATTT 63743 28 100.0 32 ............................ AAGAGATTCATGCCGATGGTTTTAAGCCATAT 63683 28 100.0 32 ............................ ATGTGTAGGAACTTCGCTAGTTCTACACCACC 63623 28 100.0 32 ............................ TGTTTGCCCTGTCACTACACGATCAAGGGTAA 63563 28 100.0 32 ............................ GTATCGGAAAATGGGAGTGTGACATGCATAAC 63503 28 100.0 32 ............................ GGGCGCAAGAATAATGGGGTAGTTCATGAAGC 63443 28 100.0 32 ............................ TGTAGCATCGCCAGAAATTGAACCATCGGTCG 63383 28 100.0 32 ............................ TAGCCCCAGATAACTCCGTGCTGTATTGATCC 63323 28 100.0 32 ............................ CAGGACTCATTACCTGCTTATGATATTCTGGA 63263 28 100.0 32 ............................ ACGACGACCAGCCAATTCCATGTGAACAGTCT 63203 28 100.0 32 ............................ CATTTAATTGGGCCACGCTGAAACTGATACAG 63143 28 96.4 32 ....................C....... CGGTACATGTTTGGCGTGTACATATGATTAAC 63083 28 96.4 32 ....................C....... GTCAGAACGTGTAGAACCGATAAAACAATTGC 63023 28 96.4 32 ....................C....... TGCTTAAAGTTCCACTTAAAAACATTATTTTG 62963 28 96.4 32 ....................C....... CATTAAAAAACCCGCCGAAGCGGGTTTGTGTT 62903 28 96.4 32 ....................C....... AGTTTCGATTCCAGCGATCGACACTGTTTTGC 62843 28 100.0 32 ............................ AAGTGGAGTGGTTAAAGTAGATGCTGTTTTTG 62783 28 100.0 32 ............................ TTCAAATGTTGCTTCACTATCAACCCAAAAAC 62723 28 100.0 33 ............................ GATTACAAAAAAGCAAGCCGCGGAATATCTTCA 62662 28 100.0 32 ............................ GCGCATTCATTTGCAGCAGGTCTACGGATTAA 62602 28 100.0 32 ............................ AAACAATTCAAGCAAATGCAGCAGTTTAATCC 62542 28 100.0 32 ............................ TTTGGGTGATATGTTGTGGCATATACTGAAAG 62482 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 100 28 99.8 32 GTTCATGGCGACATACGCCATTTAGAAA # Left flank : AAAAAAACCAAAGATTTCAAATAACAACTGATCA # Right flank : TGCAAACGATGTGTAAAAGCTTAAGCTGATTGATTCACGAGAGTAGAATATGGAATCTAATCGCCCGTAAAAATGAGTTAAAAAGAAATAATATAAACAAAAACGCACTGCTTCTGGCGAAACAGTGCGTTAGGTTAATAAGATTATGCTGGTAAATCGAACCAGATCATTTCACTATCTTCAAGTGCATGAATCGTAGTTTTCTCATCAAACAATAAAGCATCACCTGCTTTAACAATTTGATTCTCAATCATAATTTGACCTTTAATCACATGCACATAATTGTGTTTTTGAGTTGCAGCAATCTCAAGTGTTTTACCAGCTTCTAACACAGCCGCTTTCACTTCTGCATTTTGGCGAATATGCATAGCAGCATTATCATTTGGTCCTGCAATCAAGTGCCATTGGTTTGGCTGTTCACTTGGATCAAGTTTGATTTGTTGATACGTTGGTTCAGCATCGCGTACATTTGGATGAATCCAGATTTGAAATAGATGCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGACATACGCCATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCATGGCGACATACGCCATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //