Array 1 23-650 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZS010000007.1 Weizmannia coagulans strain DS39_15 NODE_7_length_80076_cov_67.203372, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 23 32 100.0 36 ................................ GCCAGTACATCGGTCACGTCGGTTATGACGTCTATC 91 32 100.0 34 ................................ AAGACGCCTACCAGTTAATTGCGGTCGATACGGA 157 32 100.0 33 ................................ CTGTTTGAATGCACGGGACTGACTGAATACTGG 222 32 100.0 33 ................................ CGGTGCATCCTTGAGTGCTTCAATATGGTGCAC 287 32 100.0 34 ................................ TGCCGGAGGACCTGGATACAGCTATCCAGCATTA 353 32 100.0 34 ................................ TGCAATGGCAGGGAGCCTTAATCTTTCCCACTTT 419 32 100.0 34 ................................ CATTCCTCCATGCTCCACCCCGTCCACGCTTGTA 485 32 100.0 35 ................................ CTTTAAATACGCGGAAACATCCCCATAGTTTGCAG 552 32 100.0 35 ................................ CTCCTCCAATATGTATAGATCGTCAACCTTCACCC 619 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 100.0 34 GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Left flank : GCTCACTCTATAAAATCACTCGG # Right flank : TCGTTTGCTGTATTTGCGATCCCTAGGATCATCAAGTCGCTCCCTAATGAATACTTGCTGAGCAAACCAGACAAAGCCTTGTATCTGGTTCGCTCAGCCGCAAATCTGGTTGATGCCGCCTTCTTTGTTCCTTCCATCAACCTTAGACCCGAAAAGTGGCGCTGAACGCGCAGATACCAGTGACAAACCCTTTTTGTAAAGTAACTCTTGTTTTTATAGTTCCTGGAACCGGGACCAGGGCTTTCCTTATTCAGCAGCCCCCGATTATGTATTTCTGTCATCCTCGTCGTCCAGTTCCCTGATCAAATTCCAAGTCTGATAAATCCGGTTTGCCATTTTCTCAGGATCTTTCAGCATCATTTGGTATAAATCCGGCTCATGGCTCAACGTTTCAAGCAGTTTCTTTTCCGGATTACTGACCGCTTCATTTGTCTTCAGGCCGGCATGGTTGGTAAGGCCCAAAAGATAATCAATTGAAACTTTCAACACTTGCGAAATTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 68597-70016 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZS010000011.1 Weizmannia coagulans strain DS39_15 NODE_11_length_70039_cov_66.956947, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 68597 32 100.0 34 ................................ CGCCGACAAATACAAATGAATTTCACTCGTCAAC 68663 32 100.0 33 ................................ ATCAAGCGGAAAGCACGTTGGCAAATGGGCGGT 68728 32 100.0 33 ................................ TGGAACAGTTAACGTCAGACAATTTACAGGGCT 68793 32 100.0 34 ................................ CCAAACGATCAGGGATAAAGTATGGGATGAGTGG 68859 32 100.0 36 ................................ ATCTAATTCAACTAATGAACCGTCATCGTATCTGCT 68927 32 100.0 34 ................................ TTCCCGCTGCTGGTTGATCAGCTTTTTCTGTTCT 68993 32 100.0 35 ................................ AGACGACAAATACGACTTACTTTGGTACAAGTTAT 69060 32 100.0 35 ................................ TACATCTGGCACATACACGTTAAAGCTGGACGAGC 69127 32 100.0 34 ................................ CGGGTCAAAATCCAAAAGGTTTAAAGCATCGCTA 69193 32 100.0 36 ................................ TTCTAGCGTTATAACCGGGCGGTCTGGCATTTTGCC 69261 32 100.0 33 ................................ CGCGCTATGCTACTGGAATAGGGACATTGCCAC 69326 32 100.0 35 ................................ CTAAACCGTGACAAGCAAAATCCGAAACACGACAA 69393 32 100.0 34 ................................ CCAAGCTCGATATAATAATCAGCAAAAGCCTGCT 69459 32 100.0 34 ................................ GTAGACAATGCGTTGTAATTCCGAGTCAAAAAGT 69525 32 100.0 34 ................................ GAACTTAACGACGGAATCGAACTCGACAGCGACG 69591 32 100.0 33 ................................ GCACCATGCTCATCGGGCAAAGGAAAACATCCT 69656 32 100.0 34 ................................ GTTGCAGAACAAGGCTTTGATGGCATCGATTATA 69722 32 100.0 34 ................................ CCGTCATCAATTTTGCACCGGATTGTGCATCCTG 69788 32 100.0 34 ................................ AGGCAGATCACCCGGATCTTTTGGACCGGGAAAT 69854 32 100.0 33 ................................ AGTTAAAAATTGTCGGTTTTTGCCGTCCGTATC 69919 32 100.0 34 ................................ TATGCGCAGCTGGCCTGTCTCTACCGCCTGCATT 69985 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 22 32 100.0 35 GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Left flank : AGATGAGTATCCTCCTTTTCTGTGGAAGTAGGTGGAAAATTTTGCTTGTTGTCATTACTTATGATGTGAGTACTTTGACCGGAGCAGGGCAGAAGAGGTTAAGAAAAGTAGCGAAAGTTTGTCAAAACTATGGCCAGCGTGTCCAGAATTCCGTTTTTGAGTGTTTCGTTGATGCAACACAATTTGCCTCTTTGAAGATTGAACTGTCTAATATTATTGACCCAGATGAAGATAGCCTGAGATTTTATCAGTTGGGAAACAACTATAAAAATAAAGTAATGCATATCGGGGCAAAACCATCTTTGGATTTAGAAGACCCCTTGATCTTTTAGTGCGAAGGTGTAGTGCACACGATTTTCCCGTGTGTTCGCACCAATATGCTAACCAATATTTTACATATATTGGTTAAATGTGGAAAAATAGTCCTTTGTTTATCAGAGGAAATGGCGAAATTTGGTTGTTTTAAAAACGTACATTCGCCTTTTTGACCAAATTCCGCT # Right flank : ATCAAGCCACTCAGGCGGGTTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 253-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZS010000146.1 Weizmannia coagulans strain DS39_15 NODE_283_length_274_cov_93.461187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 252 32 100.0 34 ................................ GGGTCGCTACAGCTAAAAGTAAGTGTGCATTTCG 186 32 100.0 35 ................................ TTGGATATCGTATTTTGCGATGTATGCGGCCACCG 119 32 100.0 33 ................................ GCCTTTGCTTGCAGGTCCTGGACAATTTCCGGC 54 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 100.0 34 GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Left flank : GCTCACTCTATAAAATCACTC # Right flank : TTGATCAATGGTGCTCACTCTAT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.90,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [21.7-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //