Array 1 223944-224579 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTO01000004.1 Bifidobacterium thermacidophilum subsp. thermacidophilum DSM 15837 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 223944 33 97.0 35 ...G............................. GTTCCGTGTCGTCGGGATGATCTTCACACCACATG 224012 33 100.0 35 ................................. TCGTGTACAAGGATGTTTCATGGATCTCCACCGAT 224080 33 100.0 34 ................................. CCAGCAGCTCTGACGGGTATGAGAGTATCGCGTG 224147 33 100.0 35 ................................. CACAATATTTGGAAGCATATTACCGACTTCGTCGG 224215 33 100.0 33 ................................. TGAGGAGACGAAACCTCCGACCGCCGGTGTGAG 224281 33 100.0 32 ................................. CCTGAGACGGCGCGAGCCATTCAGGCGCGTAT 224346 33 100.0 32 ................................. TCGGCTGGACCCCATCCGACGGGGACACCGTC 224411 33 100.0 37 ................................. GATCGTCGCCGAGGTGCCGTCGGTGTCGAGGGACAGG 224481 33 100.0 33 ................................. CAATCTGCGACTCTACGGCCCGGTGGAGGACGA 224547 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 10 33 99.7 34 ATTTCAACTCACGCTCCCCATACGGGGAGCGAT # Left flank : CATTAAACTAAACACATCGGTAACATGCAGTTGCCGATGCCGGCGTTCGCTAGAACCAATAATAGCACATTTTGCCGCTATCTCTTCTACTGAATAGCAAGATGCGCAATCGCCGAAAACCGGCAAAACACCTCTCCGGTGTTCGCGAAAGGTTAGTTTCGATCCATTCGCGTGAGTTGAAAAAGTAGAAGCGAGAGCAGTATCTGCACCAAAGATTCATTTGGTGCAGACTCTCGCTCATTGCCGCAAAGCGCAAACGCACCGCAGTTATCATACATAGAAACTTGCGCCATCGCCGACCCGATAAAATCAGCAGATAAACTGGCAGAACACAACGGCACGAATGTTGGACAATCGCATCGCCAAGCGGAAGTGCAAGCAGAACGCAGGAAACATGCAAGCCCGAAAGATGCAGACCAAGGTGAAAAGCAACATACATCCACGAGCCGCCTGATATGGGGAATGACAATTCTGGAGATAGTTCTATGAGCACGAACTCC # Right flank : CGTCGAGCGAACAGGCTGGCGACGCGTCACGCAGATTTCAACTCACGCTCCCCATACGGGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAACTCACGCTCCCCATACGGGGAGCGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 79219-78716 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTO01000016.1 Bifidobacterium thermacidophilum subsp. thermacidophilum DSM 15837 contig16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 79218 33 100.0 34 ................................. TGCCCGTCCATGCGGGTGGTTCGGACCGTATGGA 79151 33 100.0 33 ................................. GCAAGGCACTTCATTGAGTCTTGCATTTCCTGT 79085 33 100.0 35 ................................. TTGCGCCATGCCCACTATGCACGCGATCACGGCAA 79017 33 100.0 34 ................................. TCATCATCGATGGCACCAAGACAGGCCGCGTAAG 78950 33 100.0 34 ................................. CAATCATAATCAACAACATGATGATACTCTCCGG 78883 33 100.0 35 ................................. CGTGGCACTCCTACCGCACCAAAGGCGAAGCCCTC 78815 33 100.0 34 ................................. CGGCAGGAACAGGCACGACGGTTGGCTACTCAAC 78748 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 8 33 100.0 34 ATTTCAACTCACGCTCCCCATACGGGGAGCGAT # Left flank : ATCGTTCTTCTCCACGCGCCCGTTCGGCTGCATGA # Right flank : GGCGAAAATGAAATATTAAATCCACCATGTGGACACGTTCCCATATCGCCATATTTAGAATACCGCGCGCAAGACAAACTTAGAACACTTTGTCATTTTTCAAACCGCCGTGAAGTCGAAATACTCGATTCATGCCCTAATAGTACACGAAATAAGGTGCGAGCATGCCCAACGCATGATGAGAACTATCGGTTCGCACCAAACGATAAGTTTCTATACATTATTCATTATCATCTACTTCTTATTTTTAAAGGGTGCAACATGAAGGCGTATAGGGACAAAGTTATTGCTTTACACATTCCATTTCGTTGCGTATGTGGTGACATACTCAACCGGGTGGAAGCACATGGGAACGACCAGATTGCCGGGCATCTGCCGGCTCGTTGTTTGTGTTCAATTAGATGTGGACGGTTTCGTCACTTTTTCTGAACAGTCGTGGCGTTCATTTTGGACGGTGTGGTCGGTTGCGGAATAGGGCACCGATGCCGTCCGGTTTCCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAACTCACGCTCCCCATACGGGGAGCGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //