Array 1 57808-57003 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYT01000020.1 Salmonella enterica subsp. enterica serovar Typhimurium strain O52 NODE_20_length_81322_cov_31.947617, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 57807 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 57746 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 57685 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 57624 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 57563 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 57501 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 57398 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 57337 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 57276 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 57215 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 57154 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 57093 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 57032 29 96.6 0 A............................ | A [57005] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 76043-73940 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYT01000020.1 Salmonella enterica subsp. enterica serovar Typhimurium strain O52 NODE_20_length_81322_cov_31.947617, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 76042 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 75981 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 75920 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 75859 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 75798 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 75737 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 75676 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 75615 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 75554 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 75493 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 75432 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 75371 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 75310 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 75249 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 75188 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 75127 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 75066 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 75005 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 74944 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 74883 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 74822 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 74761 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 74700 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 74639 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 74578 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 74517 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 74455 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 74394 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 74333 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 74272 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 74211 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 74150 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 74089 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 74028 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 73967 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //