Array 1 66918-66229 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYLV01000002.1 Photobacterium sp. NCIMB 13483 CFSAN065521_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 66917 28 100.0 32 ............................ AATGGCGGCAGCTGCGGCCCCCGCGGCAACTA 66857 28 100.0 32 ............................ AATATTCGTAATTTCTTCACTGCTTAACATTT 66797 28 100.0 33 ............................ TGAACTTTACCAGAATTGAATATTTTCAAGAAA 66736 28 100.0 32 ............................ TTATTAAGTTCATGTGTGGAGGTGGTGAGTTT 66676 28 100.0 33 ............................ CACAGAGGAGCGGCCAATTTTTAAATTTGATAG 66615 28 100.0 32 ............................ CCGTTCGAACCGGCATGGCGAGAGATTTTGAC 66555 28 100.0 32 ............................ TGCTTTTCGGAAATGCGACGCACTTCGTCTAG 66495 28 100.0 32 ............................ AGTCGTATAAACCCCCTCACTTACACAATGGC 66435 28 100.0 32 ............................ TGAGCATCAATGGTTTAGATTGCTTTGCCTGA 66375 28 100.0 32 ............................ ATTTTCCAATAGCGCCGCTCGTCTCTAAAATC 66315 28 96.4 32 .C.......................... ATCATGGCATTGACAGAAGTTAAGCTTAGGTT 66255 27 85.7 0 ....................T..T-..T | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAACTTCATTAGCTGAGAATAACGGCGTTCCGCCACCACCGCAAAAACCGACTAGCACGCCAGCTTTAGCTAATTCGCGCATTGCAGCTTGAGTAATCGATGTACCAGTTCCAAGCATAATGGCGGTCGTGTTTGCTATGGGGATATTCCAATATAAAGATTGCTTACCTTCGTCAGTGACATATTCAACCCGTCCACCATTCACTAACACGCGACAATGCTGTAAATAATAAAGATTGGCACGTTTAGAATGAATAATCGTTTTTAGCTCACTCGGTGTGAAAGACTTAGCGCACATAGCAATCACCAACAATAAAAAAACGAATTATATACATAATGCGTATAATTCGTTTAGAGTGTAATCACAAATACCCTTTTTTATTTGATAACAACTCATACCATATAAAACAACGACTTAAAATATCAGTTTAAATAAGGGTATTTGGTGGGAATTTACTGTTTAGCTTCTATAAGCAATCACTTATACTAATTAAGCTTCA # Right flank : TACTTACTGCAGCCATCGCTTCTTTGATTTCATCTGAGCTATAGCCTTTTGATGACAAATACGCATAGGCTTTACTTTTGTCTTTAAAATTCGATAGATCAAACCGCTTTTTCGCTAACACTAATTGGCAATTTTCATAAAAATCGACCTCACCCGCTTCCTCTAAATCATAGAAGACTTGCTCAAGATTAGTAATATCAACATGTTTCATTTTAAGCTCTTGCTTAATCACTGTTTTTCCTTTGAGCTTTCTCACCAATTTCAATACTTCGGTTTCAAGATCCGCATTCATGCCTTTGATTTTAGCTTTAGTTAATAGCGTATCGGCAGCATCATGTTCAGCAATCGCTCTTGAAATATCTTGAAAACTGTACCCTCGCTTAGTGAGATCGTTGGTTATTTTCTCTTTGGTGGTTTGACTAAAATCATCATAACTATCTAAACGACTTTTGATCATATCAAGTTCAGACACTTGTTTTTTCTCCATAATCTCAATTAAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 75393-75866 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYLV01000002.1 Photobacterium sp. NCIMB 13483 CFSAN065521_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 75393 28 75.0 30 .....T..TT.C....T..A.....G.. TATACAAAATATCATGTATTGTACTACTAT G [75417] 75452 28 89.3 14 ...T....T.....A............. TAACAACACATCTT Deletion [75494] 75494 28 71.4 17 ..GT.....T.C..A..C..T.G..... CTATTGACTCGATGTTT Deletion [75539] 75539 28 100.0 29 ............................ TTTACAGATGCCTAGACATGATAGGTTTT T [75566] 75597 28 82.1 32 A.A......T....A..C.......... AATTCAGAGCGCTGGCGTAGATAACCTCTAAT 75657 28 82.1 34 .A...........TAA.C.......... TGATGCGAACAATCAGGGGTTAGATTGCATTTAT 75719 28 89.3 31 ...........A.A...C.......... GAACTTGGCAGGTTTAACCATGATATCAATA A [75734] 75780 28 92.9 31 ...........C.....C.......... TTTACACCACAGATTTAGGTGCTTATTCTGG 75839 28 85.7 0 ...A.....T....A..C.......... | ========== ====== ====== ====== ============================ ================================== ================== 9 28 85.3 27 GTTCACTGCCGTACTGGTAGCTTAGAAA # Left flank : GATACGTTACGCTTACATGGTTCTCAAGCTGCACTTGAAAAAATGATGGCTGATAGTTGGCTAAAAGGATTAAGAGATTATACCTGTGTTACTGCTATTACTGCGGTTCCGAGTAATACAAAAGGTTTTCAAACCGTAAAACGAGTACAAGCAAAAAGTGCTAACAATAAGCGTAAACGGTCGATTGCTAAAGGTTGGATCAGTGCAGATGAAGCTATTCATGCGATCCCTGACACCGCAGAGCGTAAGTTAACGTTGCCTTATATCCAAATGCAAAGCTTATCTAACCAGAACGTTATGCGGGTATTTATTGAGCATAGTAAGGTTGTAAGTGATGCAACGGATGGTGTATTTAATAGTTATGGATTAAGTGCTACGGCTACAATACCTGTATTTTAAGTTTGTTTTAATCGTAATCGCTGCGATATGTTAGGTGACTATTTAATCTTTTTTTTGATTTTTATTTAACTTAAACAATAGCTTATTGTAATTGTATTTGA # Right flank : ATCAATATGCGCTTCTATAATTTACAGTGACCTTTAAACAGGAAATTATACGACACTAAATAGTATAAGGTTGAATGATGTTTTCTTACTCATTAAACGCTGCTTACTGATTATTCTCATGTTCAAACTCGACCCACGCTTTTTCCAATTCAATTAGGCTGGCGGCAATCTCAACGTGGCTTCTTTTTTGAATGATTAATTGTCTAACGTGTTTTTGCTGTATAAAAATATGTTGGCGCTTATTGTCTATAAAGTAATTTCGCAATCCTTTTGCCTGATCCATATACTGATACCCAATATAAAACGCTGTATATTAAAATAGTACATTTATTGTGGTTATTCTCAAGTGTTTGATGGGCTGAATGGATAGTTCGTGCGTTTATTTGCTTATGGCGTATCAAGACTGAAACAGTTTATGCCATTATATAAAGGGGAAGGGATGTAACAAATTATACTAATTTTATATATTGGGTCGGCTAGAGAAGAAATACCCGCCATTA # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.33, 5:-1.5, 6:0.25, 7:-0.41, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACTGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGTAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //