Array 1 1696-752 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIHF010000033.1 Escherichia coli strain B-58 ESC_QB0127AA_AS_NODE_12_length_107514_cv_10.649101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1695 29 100.0 32 ............................. CTGGCAGCACTGCGGGAAATATTGTTGCTGCT 1634 29 100.0 32 ............................. GCGGTAATTGCGTTATTTTGGCTGTTTTCCGC 1573 29 100.0 32 ............................. TCGTCGGGTCCAACAGGGGTCGGTTGTTCGCC 1512 29 100.0 32 ............................. GAGCTGATATTTTGATAACATCAACAGTTCAA 1451 29 100.0 32 ............................. ATCGCGGCTCGACCCGGAGGCTCTATCTTGAG 1390 29 100.0 32 ............................. CGCAACATCGCCAGATTTGTCGTAGGAAAGCA 1329 29 100.0 32 ............................. CTGCTTTCGTTTTAGGCAAGCTGTCATCTGGG 1268 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 1207 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 1146 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 1085 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 1024 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 963 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 902 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 841 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 780 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24990-26666 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIHF010000095.1 Escherichia coli strain B-58 ESC_QB0127AA_AS_NODE_18_length_90626_cv_9.953889, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 24990 29 100.0 32 ............................. TCGTTAAAACCGGTCCTAACGGCTTACCTACC 25051 29 100.0 32 ............................. TTGGCAACGCAACTAAAGACAAAAATGGCGAG 25112 29 100.0 32 ............................. GCGAGACGGTAACAGCGGATATTGTGCAGGCG 25173 29 100.0 32 ............................. TTACGCGCCTGGCTGGCGAACCGCTGGAACTG 25234 29 96.6 33 ............................T GGCCTGGATTTTTTCGAACACCACCCGCTCGTT 25296 29 96.6 32 ............T................ CAAATATATTTTGCGTTAATTATTCGAGGTAA 25357 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 25418 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 25479 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 25540 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 25601 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 25662 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 25723 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 25784 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 25845 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 25906 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 25967 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 26028 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 26089 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 26150 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 26211 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 26272 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 26333 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 26394 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 26455 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 26516 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 26577 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 26638 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //