Array 1 92574-91284 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXET01000004.1 Pseudomonas aeruginosa strain AUS128 IPC371_4.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 92573 28 100.0 32 ............................ AGTTGCTCCACCGCGTGTGGTGGTGGCAACTG 92513 28 100.0 32 ............................ TCCCTGAGCGCCTGGGCCTCGGCGGCGAGGGC 92453 28 100.0 32 ............................ TCTGATTTCCCTCCGATGCCGGGATTCCGGCA 92393 28 100.0 32 ............................ TACATCGAGGTTTCGTGGCATGCACTCAGCGG 92333 28 100.0 32 ............................ TTGGTCCCCCGCGCAGATTCCCAGTCAAACCC 92273 28 100.0 32 ............................ AGGAAGCGCTCCAGGCTGCGCACGCTCGGCAG 92213 28 100.0 32 ............................ CGGTCAAGTCGTGGCTCTTCGAGGCGACTGAG 92153 28 100.0 32 ............................ TCTTCGTTCCGTTCCGCCTCGAGCACATCGAA 92093 28 100.0 32 ............................ CGAACCACTGGAGGTACGTGCACAGATCGGAC 92033 28 100.0 32 ............................ GTTCCGCCATCGCCGCCACCACCCGTACCGCC 91973 28 100.0 32 ............................ TCCGAGTGCCGGGTGGATGTTGTGCTACGGCC 91913 28 100.0 32 ............................ ATGCAGAGGCGGTCGATGCGCGGCAGCTTCAC 91853 28 100.0 32 ............................ CGACGCTCTGCCAGCCGCCGGCGGTGTAGAGG 91793 28 100.0 32 ............................ GCTTGCATCGCACGCCCCGCAGGAGCCACCAC 91733 28 100.0 32 ............................ GCATCGAGCATCGTGCGGCAGTCGAAAATATC 91673 28 100.0 32 ............................ TCGCTGACCGCATCTTCCCGCTCTTCCCACGC 91613 28 100.0 32 ............................ AGCTCGCGCGACAACTGAACGAGATCGCAAAC 91553 28 100.0 33 ............................ TGTTTGCACAGGCTCGCTGTGTTCTGGTTTTTT 91492 28 100.0 32 ............................ TTTGGGTCGTTCATGTCCACGCCGCGTTTGCG 91432 28 100.0 33 ............................ GCGCATGTCCATCAAGGAACTCGCCGCCAACAT 91371 28 96.4 32 ........................A... TATCACCCAAGCCCGCGACGTCGACGCGGAAC 91311 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCGACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAAGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4459-3210 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXET01000006.1 Pseudomonas aeruginosa strain AUS128 IPC371_6.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4458 29 100.0 32 ............................. TCGTCGCGGGAAATATCAGAACCGGCATCTTC 4397 29 96.6 32 ............................C GCGGATGCTCGCCTTCGCGACCTTCCCGGCGC 4336 29 100.0 32 ............................. GCCCACTACCTCGCCGCCGTGTCGCTGTTCAT 4275 29 100.0 32 ............................. GCCCACTACCTCGCCGCCGTGTCGCTGTTCAT 4214 29 100.0 32 ............................. TACCTGCAAAACGCAGGGGCGAGTGCAGCAGC 4153 29 100.0 32 ............................. AGGCTGCCTAGCCAGATTGCTGTGCGGCGGGG 4092 29 100.0 32 ............................. CTGGTTGATGCCTTCTTGGGTCAGGCAGACGT 4031 29 100.0 32 ............................. ATGGCGGAACGCATGGGCGACCCCATAGGCTC 3970 29 100.0 32 ............................. GGACGGCTCTTCGTTGATTCCATGACGGGGGC 3909 29 100.0 32 ............................. ATGTCCGGCGTCGCCCTCCCCCGTGGGCAGAA 3848 29 100.0 32 ............................. TCCTCCACCCGCTGGGTGATTTCCTCGGTACG 3787 29 100.0 32 ............................. CGGGATAACAGTGGGAATCAGTCTGTAGGCTT 3726 29 100.0 32 ............................. TATGCAGAGTTCTTCCCCGGGTCTGCGATTGC 3665 29 100.0 32 ............................. TCGTAGCGCGGACTGATGTCGTTGCAGTACTT 3604 29 100.0 32 ............................. GTCTCCCACGGCGATCCGCGGTAGATCATGTT 3543 29 100.0 32 ............................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 3482 29 100.0 32 ............................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 3421 29 100.0 32 ............................. CAGCGGGCCACCTGGCTGCAGTTGCTGACCAG 3360 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 3299 29 96.6 32 ........T.................... AAGGACCGCGTCCGCGTGCTGCTGGAGACGAT 3238 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGTCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGATCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14720-14018 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXET01000006.1 Pseudomonas aeruginosa strain AUS128 IPC371_6.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14719 29 100.0 33 ............................. GACCGCTTCATCGTGCAGCGCGAGCGCCTGGAC 14657 29 100.0 32 ............................. GCGATGGGCGCCATCGTCCGCGAAGCCACGGT 14596 29 100.0 32 ............................. CCCGACGAGCACCGCGTCGTGAGCGTTGCGAC 14535 29 100.0 32 ............................. TCCATAAACGGGCGCAGCGCGAACACGTAGAT 14474 29 100.0 33 ............................. ATCGCCACGCTGTATCGCGGGGCGGTGGTCACC 14412 29 100.0 32 ............................. TCAACAACGGTGATGTCGGCTTCGGGCCAGGG 14351 29 100.0 32 ............................. ATCCCTGATCGAGTTGAATCGCGGATCTTGGC 14290 29 100.0 32 ............................. AACAGCCGCTGGGAGAAGTCGGTTCCGCTTGC 14229 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 14168 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 14107 29 86.2 32 .........G....C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 14046 28 79.3 0 A..........A..C.....-..A....T | C [14037] ========== ====== ====== ====== ============================= ================================= ================== 12 29 97.1 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTTGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCCTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCATGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37694-38982 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXET01000014.1 Pseudomonas aeruginosa strain AUS128 IPC371_14.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37694 28 100.0 32 ............................ TGGAGTCCGAGCCGCTGACCAAGCTGCTCGAG 37754 28 100.0 32 ............................ ACCGAGCCCTGGTAGAAAGCCAACGCCAGCAC 37814 28 100.0 32 ............................ TTCGGAATGCTCGGGCGGATTTCGCGCAGTAG 37874 28 100.0 33 ............................ CTGCCTACCCTTCTGCCAGGCTCCACAGCGGAA 37935 28 100.0 32 ............................ GTGTTGGGGCTGTAGAAGTTCCAGGCTGTTCC 37995 28 100.0 32 ............................ TGCGCATTCACTCCGTGCCGGGCTTCCACCGG 38055 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 38115 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 38175 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 38235 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 38295 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 38355 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 38415 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 38475 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 38535 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 38595 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 38655 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 38715 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 38775 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 38835 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 38895 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 38955 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48968-47857 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXET01000014.1 Pseudomonas aeruginosa strain AUS128 IPC371_14.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48967 28 100.0 32 ............................ TCAACGACGCCGACCGTCGCCCCGTCGCTGAT 48907 28 100.0 33 ............................ TGGACGAGTGTGCCGACGAGGTTGCAACTTGGC 48846 28 100.0 33 ............................ ACGGTAGACCATGTTGACCGCCGGGTTCTCGAC 48785 28 100.0 32 ............................ CGGCGGCACCACCTGCAGCATCAGCGCACTCA 48725 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 48665 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 48605 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 48545 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 48485 28 100.0 32 ............................ GCCCAGGCACGTTTGCTCGCGCTTTGATCTCA 48425 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 48365 28 100.0 32 ............................ TCGATGCCCGGCCAGGGTGCCCCCGCTTTCGC 48305 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 48245 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 48185 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 48125 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 48065 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 48005 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 47945 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 47884 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //