Array 1 4240-5234 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQNV01000084.1 Corynebacterium bovis strain 7894 84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================== ================== 4240 29 100.0 32 ............................. ATCTGGGACATCGCCGCCCGCAGATCATTCGT 4301 29 100.0 32 ............................. ATGGTCGGCCAGGTGTGCGGTCTTCTGCATAG 4362 29 96.6 32 ............C................ GCGGCGGGGGCGATTGGAGCGAGGTAGTGGGA 4423 29 93.1 32 ............C...............T CGAGGGCAGCGTTCGAGTCGATGTCGCCCCTG 4484 29 100.0 32 ............................. CGACTCCGGCCACGCCACACGAGCACTGTCGA 4545 29 96.6 32 ............................T CGGCACCGACGCCTGTGACAGCTGGAGAGCGT 4606 29 96.6 32 .....T....................... GAGGCGTGCTTCGTGTCGTTCAGGGCGGCGGG 4667 29 96.6 33 ............................T CACCCGCGGAGTCACGTTCCTCCCCCCCACTGG 4729 29 100.0 32 ............................. TCGGCGAGCTGCTGTGCACGGTCGGTGGGGGA 4790 29 93.1 32 .C..........................G TTCCCGTCGCCGCCGTAGCCAGTGGTGAACAG 4851 29 89.7 33 A......G....................T CGACGAGAAGACATGGTACGGACACCCCATACC 4913 29 100.0 32 ............................. CCGTCACCCCAGCACGCCAACAGCACCGCCGC 4974 29 93.1 32 ................T...........G CCCCAGAACTCCCACTCGTTGTGGGTGAACGC 5035 28 79.3 82 ...........CC.G.......C..-..T GTGGGGAGCACCCGCGGGGATGACCCCGGGCCGCGCCGCTCCTGGCTGGAAGGGAGGACGACCCGCTAGACTGCAGACACTG 5145 29 93.1 32 ............C...............G CGTCACGCTTGGACGACTTTGATCCGGCATGT 5206 28 93.1 0 ...........-................A | C [5221] ========== ====== ====== ====== ============================= ================================================================================== ================== 16 29 95.1 36 GTGCTCCCCGCGTGAGCGGGGATGATCCC # Left flank : GCACCCGAGGACGGGGCCGACCAGGTTCCCGGCGGCCCTTCGCGACGGGAGTCCCCGTGATCACCGTGGTGTTGACGTCTCCTCCGGAACGGGTGCGTGGTCACCTCACGCGCTGGCTCTCAGAAGTGGCGACAGGAGTGTATGTCGGCTAGGTGAGTGCCCGCGTGCGGGATGAGTTGTGGCAGATGATCCAGGTGAACATGGACGGCGGTCGGGCGGTGATGACATACCCGACCACCACCTGTGAGCAGGGGTATGCCGTGAAGGTTCACAAACCGCAGTGGGAACCGGTTGATGTCGAGGGGCTGGTCCTGTTTCGTCGGCCGGGCGGTGACCGGACATCGCGGACCCGCGGCGAGTGGTCACGGGCCTCGCGGGAGCGTGGAGGCAGGACCAGGCGAGCGGATGGCCCGCACTGATGGCAGGTACAGACGTGAAAGGGCTGATCGACATCGAATGAAATCTGGCTTCTCGTGTACTACCATCCCTGGTCAGGAAGT # Right flank : ACCCCCCCACCACCACCGCCCACCCACCTCCCGTCGTGTTCGCCCGTCCGCCGACCGCAGGTCTAAGGTGAATCCGTGGCCACGCGAACGACGACGAACAATGCCGCGCCCGGGTCAACCCGGCGCCGGCGGGGCTGGCGAGCGTTCCTCACGCCGGGCTGGGTCATCACCGCCGTCATCGTGGTGATGTTCGCCTACGTGGCGTTCACCGTCCTCGCACCGTGGCAGCTGGGGAAGAACACCCGCACGCAGGAGAACAACCAGCGTCTCTCCGCCGCGATGGACGCCGACCCGGTGCCGGTCGAGGACGTCCTCCCCGCGGACGGCTCACCCGCCGGCGCGGACCGCGAGTGGACCCGCGTGACCCTCCAGGGTCGCTTCATCCCGGACGCCCAGGTGCTCCTGCGCAACCGCCCGGTGGACACGAGCCCCGCGTTCCAGGTCCTCACCGCGTTCCGCCTGGACTCGGGCGGCACGGTCCTCGTCAACCGGGGCTGGAC # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.23, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //