Array 1 455262-453523 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035676.1 Salmonella bongori strain 04-0440 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 455261 29 100.0 33 ............................. ACTGTTAAGTCCTGGTCAACTACCCCGCCCACC 455199 29 100.0 32 ............................. GCAACCCACTAATTAACTAATAAACAAAAATC 455138 29 100.0 32 ............................. GGAAGAACCGTCTGGACCAGCTACCGAGGCAG 455077 29 96.6 32 ............................A TTTACGGCGAGGACCAGCAGGACGGCGACTAC 455016 29 100.0 32 ............................. CTGGACGGCGATCCAACACAACTACCAGACCA 454955 29 100.0 32 ............................. GCTAATCCAGTCGGAACTACAAAAAATATCCC 454894 29 100.0 32 ............................. CGCGATGAACGCGCCGTATTCGCCGATATCCG 454833 29 100.0 32 ............................. GCCAGAGTTGTAAACAAACAGCTAGAGATGGG 454772 29 100.0 32 ............................. ACCACAAAATCGTTGTCAACTTCTCTGCGGGC 454711 29 100.0 32 ............................. GTTCGCTTCATACGCCTCCGCATCGAAATTTG 454650 29 100.0 32 ............................. ATTGGGCAAAATTGCGCAGAACAATAACGGAT 454589 29 100.0 32 ............................. CGATACATATTCAGAGAGTGGCATAACCAGCA 454528 29 100.0 32 ............................. AATCAACAGGCGCGGCATAAGTAGTATCATAT 454467 29 100.0 32 ............................. TATTTAATATCAAAATTAAAGATATTCAGACC G [454450] 454405 29 100.0 32 ............................. TTGATTCTTTGTACCATTGAGAAAGTCTACCC 454344 29 100.0 32 ............................. CTTTACATAAAATATTAGGATTAATGAGTTTG 454283 29 100.0 32 ............................. GGTCGGAACTCCATTGTCATCATTAATTGTTC 454222 29 100.0 32 ............................. GGACAGACGGCAACCACCACTGCAGTGGCCGC 454161 29 100.0 32 ............................. GCACAACAGGCTATTGCCGAGTTTGGCTATAT 454100 29 96.6 32 ........G.................... GAATAATTCGTTTTTCTCCGCTTTCGAATTCA 454039 29 100.0 32 ............................. CCATCCGTCGTCGGGCTTCGCGTTCCAGTCCA 453978 29 100.0 32 ............................. TCTGCATTCCTTAAATGTAATTTCATTATCAT 453917 29 100.0 32 ............................. GTAAAAGCGGTAAAAATCACGGTCGGCATACA 453856 29 100.0 32 ............................. CCACGCGCAGCGGATCCCCATCAAATACAGAC 453795 29 100.0 32 ............................. GATTTTGCTGGCTGGACGCGCGTTAGTATTTC 453734 29 100.0 32 ............................. GTTAAACTCAAGCGCTCCAAGTGTTATTGATA 453673 29 100.0 32 ............................. TAAATAGTGTTATTTTCTAAACGCAATGTGTT 453612 29 96.6 32 ...................A......... TGGTTGGCCTTCAGTATGCCATCAAGATAAAA 453551 29 75.9 0 ............T........C.TTTA.T | ========== ====== ====== ====== ============================= ================================= ================== 29 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCCGCCGGAGAAATTGAACCGCCTCAATCCGCGCCGGATATGCTGCCGCCCGCGATACCGGAGCCGGAATCTCTGGGTGACAGTGGGCATCGGGGGCATAGTTAATGAGCATGATGGTGGTGGCAACTGAAAACGTACCGCCGCGTCTGCGAGGGCGGCTTGCTATATGGTTACTGGAGATTCGTGCGGGCGTTTATGTTGGCGATACCTCAAAACGCATTCGGGAGATGATCTGGCAACAGATAACACAATTGGGTGGAGAGGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCTGGTTTTGAATTTCAGACCTGGGGGGAAAACCGCCGTGTTCCGGTAGATGTAGATGGGCTCAGGCTGGTTTCCTTTCTTCCTATTCAAAATCAATAAGTTGAAGGCTCTTTAATAATAAGGAATTGTTGCTTTAGCGTTGGTAGGTTGTTATTAAGCCAAAAAACGTTTTTAGAACAATTACATAGATTTAGA # Right flank : GGATGTTCTGACACGTGGAGTGGTGAAATTGACTATCTGTCAATAAGACAACACGATGGACCATAATCATGGCTGCCGTCCGTATTGCTGAAATATCTCTTTATATGCTGCGGGGCGCAGATACGTCCCGCGCCAGTATGACTATTTGGGCTGGATGGGCGCCGCCTTTGCCAACTCTTTTACCAGTGGCAGCATTATCCGCACCACGTCGCGGCTACGGCGCTCAATTCGCCCAGGTAAGGCTTTATCGATATGCTGTTGATTATCCAGCCGTACGTTGTGCCAGCTATTGCCATCCGGAAAAGAGGCATTTTTCGCTCTCTGCTGGTATCCATCTTTTTTACCCAGACTCCAGTTCGTCGCTTCAACGGAAAGCACAGAAATCCCGGCGTCATCGAAAACTTCCGCATCATTACAGCAGCCAGTTCCTTTAGGATACGCCGGATTGAGTCCCGGATTCGTGCTGGCGGCGATACCATGTTGACGCGCGATGGCTAATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 472916-471727 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035676.1 Salmonella bongori strain 04-0440 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 472915 29 100.0 32 ............................. CAGTTATTGGTCTTACTAAATAAGTCCCAGAA 472854 29 100.0 32 ............................. CTATCAACGAGAGCGACGCGCAGAGTGAGGGA 472793 29 100.0 33 ............................. GTAAAAAACCGTCACAGGATGAATAATGAAAAT 472731 29 100.0 32 ............................. CAATATCGGGGCCAGTGCGTAAAATCAGAAAA 472670 29 100.0 32 ............................. CTCCATAAAATTGCTTCTTTCATCGTTAAGAT 472609 29 100.0 32 ............................. CCAGACTCACGACTATGAGCGCCAGTAGAATA 472548 29 100.0 32 ............................. TAATCAGGGGGACACCACTTGAATATAACGCG 472487 29 100.0 32 ............................. TCGTGGGGCAGACGGTATCACGCTCAAGTGGC 472426 29 100.0 32 ............................. GCGGCAGAGTGCATCGACTGGTCAATACCCTG 472365 29 100.0 32 ............................. GAATCCAAAAAGAAAACGGTGAAATATTTTCA 472304 29 100.0 32 ............................. GCGGATAACGTTCTGCTTAAATCCACTCAATC 472243 29 96.6 32 A............................ AATATCGGGCAGGCATCAGAATGTCAGGACGT 472182 29 100.0 32 ............................. CAGTTCCAGGTTGGCGAGTCTCCGAACGTGTC 472121 29 100.0 32 ............................. CGCTGTAGCTGCTCGCCTGGTACGTGAGAGAA 472060 29 100.0 32 ............................. GTAATTCAGTTGCCCGGACTCAACGAACTGCA 471999 29 100.0 32 ............................. GCGAATCTGAATCGCTTATTTAACGTCAGCAT 471938 29 100.0 32 ............................. AATACTTTTATGTCGCCAGTAGCTTTTAACGA 471877 29 100.0 32 ............................. TTACACATCCGGCAGGGGCGTCACCAGCACCA 471816 29 100.0 32 ............................. CCGGGGTTCCTGTTTTCAAAATCTGTAATCGC 471755 29 93.1 0 ....................A.....T.. | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGAATGAAATCAAGCATCCGGTTGGACGAGTACGTGATATTGAGGCGCTGGATGAGTTGTTAGCCACGTTGAGCGACGATAAACCGAGAGTGATTGCTTTGCAGCCTATCAGCCAAAAAGAAGACGCGACGCGTCTGTGTATTGATACGTGCATTGCGCGTAACTGGCGACTGTCTATGCAAACGCATAAGTATTTAAATATCGCCTGATATGCTGTCCGTTCTACGGATGGCCTGTCGTCGTGTGTAATTTATCTATCATCTTGCGTTCGCTATTTCTCCAAAAAATTCGAGGAATGTATAAAGTAGCTGAATAATTTTCCATAGCGAGACATGGATCACACTATTTTGGTGAGTTTAAAGAAAAAATCGTTCACTGAATTTTTTTGTATCAAAATCAGCTGATTATATGTTCTTTAAGAATTTAAATTTGTTGCAATTATGTTGGTAGGATGTGGCGTTGATAAAAAACACTGAATAAACAATTAGGTATATTTAGT # Right flank : TTCCATAACCATAATCTGCGTACCAGTAATCGTTCGTACCAAACAGTAAAGTAAAAAGAACCGTGTTTTGTGGGGGATAAAGGAGAGGGGGATGGCGTTAACGATTAAGGTATTTCTCGAAAATCATAAAGTCGCTGGTGTGGATAACGCTTTGAAGGCCAGGCCAGGATTAAGCTTATTAGTTCAGGATGAATCTACCTCGATATTATTCGATACCGGACCTGACGACAGTTTTATACAAAATGCATCGACAATGAGGATCGACCTGTCTGATATATCTGCGGTGGTGCTTTCACATGGACATTATGATCACTGCGGCGGCGTACCGTGGCTTCCTGATAATAGCCGAATCATCTGTCATCCAGAAATGGCGCGTGAACGTTATGCGGCAATAACGCTTCCTGGTATGACCCGCAAAATAAAAAAATTATCGCGAGAAGGGGACTATTCACGTTACCGAATGGTGTACGCGCGCGACCCTATGCCAATTAGCGACAAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //