Array 1 10834-12464 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNNQ010000065.1 Ligilactobacillus ruminis strain 1001095H_141210_H11 NODE_1332_length_52264_cov_16.9096, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 10834 30 96.7 38 .....A........................ GTGGTTATCAGAGCACATGACTTCAAAGCCACAATCAC G,AG,T [10837,10840,10844] 10906 30 100.0 37 .............................. TCGAGCAGCAGCAACTCTTTCTTGCCCGGTGCCAGTC 10973 30 100.0 35 .............................. GTAGGCATTTTCCAGTTTACGTCTACCTATGTAGC 11038 30 100.0 36 .............................. GTCTAGCCAGTGACCATTATAGTTAATTGCATCCGT 11104 30 100.0 39 .............................. AGGAACCGCCTGCCGCAAACGAGGTTGCGCATCGCGCTT 11173 30 100.0 35 .............................. CTACCGCTCAGGTCAAGGGGCGTCAAGTCAACCGA 11238 30 100.0 36 .............................. GAAGACCGCTATGATTTCTTTGGCGGCCATAACTGT 11304 30 100.0 36 .............................. TCGCAACGGCAAGACTATCTACAGTATGCTTCACCC 11370 30 100.0 37 .............................. AACAAGCGGCACCTACACAGTGCAGAGTGGCGACAGT 11437 30 100.0 36 .............................. TTAGAAGCACGATTGTCGTCTTTCTTTTCGTTCTTA 11503 30 100.0 36 .............................. GACATAATCGATTGCTTCGCTAAGATTGTCGGCAAT 11569 30 100.0 36 .............................. TGCATAGCAAGCACAGAGTCCCGTTCATACAAGGAG 11635 30 100.0 38 .............................. CAGTGTACAGGGCACTGCATCCCTGGTGCTCGACTGCA 11703 30 100.0 35 .............................. AAATACAAACAGCAAAAAGCCCCGCCGTTTCTGAC 11768 30 100.0 39 .............................. TTTAGCGTTCGTGTTATAGTCTGCATCATCATCATACCA 11837 30 100.0 39 .............................. TCCGAATATGCTGCTAACCACAGCGGATACTTTTTAGCT 11906 30 100.0 36 .............................. TGCTTTGCGTGTACTACCGCTTGTATCTTCTACATA 11972 30 100.0 37 .............................. CAAAAGTTGACTGACCATAAACTTGCAAGCCGTCACT 12039 30 96.7 35 ............................G. CATAGCGAAAAACCGTCTTCCGAAAAAAAGGAAGG 12104 30 100.0 37 .............................. TCTTCTGTGCGTCTCTGAGAATTGCGGTGACAACTTT 12171 30 100.0 36 .............................. GTGTGCGGACAGTGCACACCGGCAATTGGGATGTTG 12237 30 100.0 36 .............................. TATCCCGTCAACCATGGCTGGTAATTCGTGGGTCTA 12303 30 100.0 37 .............................. AATGAGTTTGTAACGGCAAAACCAGCTTGAGACATTG 12370 30 100.0 35 .............................. AACGCAAGCTTTTTCTGAATGATTACGTCAATTGC 12435 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 25 30 99.7 37 ATTTACATTCCTCATCAGTTAGATAAAAAC # Left flank : TCTCTTCTTGAGCTTTCGCAACACATTTCGCTCGGAGAACTGATCCACATCTACAAGCTCATGAGCAAGCGCAACCGCAAAGAAATCGCATCCATATATGACTGCAGCGCAAACGAGCTCATCAGTTGGATGGAATGCATCGCGCTTTACCGCAACTGCTGCTGTCACAACGGAAACCTGATCGATATCAAAATCGAAACAAGGCCCGTAACGCCCCGATCATATTCCAAATATCTTTTTCGCATGAAAAATACAGAGACGACAACGAACAGGTTCGCACTGGGCTGCGTTGTCATACTGCATTTGGCAAAAACAATCAACGTTGAAAAAGAAGAAACGGATGCGTTGAAACAGGCCATCTTAGCCCTTTCAAACGACAAGACGACGCTTGAATCCTATGGGTTCGTCAGTCGGGAAGGATTTGAGGGGGCGTTTGGGGAATGAGGCTAAAAACGATTTAAATTTATATGATTCCGTTGTTTTATTTTTTTATCGTCACC # Right flank : CTCCATAGCTTGAAAATACTAACACCACTATATATCTTAAGCGTATTTCTGTCAATGCAATAAAAATTTGAAGCTTATTTGATATATAATATGCTCGAACATCAGTAGATGCTTTCGTATCAGTAATTATAGAATCTGTCGAAACACCGTAATAATTTATTTATTACACATAGACAGATATATTAGAAGAAATTTGAAGTATCTGCGGATGTGTCCATACCCCAAAACTCTTTGATCAACCATTTGTTACTTCTGCTTTTAAAAATAATTATTGAATCTAAATCTTTATCTATCCATTTAGACAATTCTGATTTTAATTTATTTAATTTTGCAACTGTTAGTTCTCCCTCAAAAACAGAGTTCTGGATATGAGTAAGATATTTTTTACATATTTTAAAAACTCTTCTCATACGCCTGGACCCATTATTTTCAACGCTTATATCATAAACTAAAATTACATACAACTTATCACCACCAAATTTTAAAAGGAGAATATTCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCTCATCAGTTAGATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 22643-22906 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNNQ010000081.1 Ligilactobacillus ruminis strain 1001095H_141210_H11 NODE_1593_length_33410_cov_26.5926, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================== ================== 22643 23 100.0 27 ....................... ATTGAATTGTCCGTAAGCAAAACGCAT T [22658] 22694 23 91.3 40 ............C..G....... CAGTGATTTGTCCGTAAATTTTTACCCATTATGATGATGA 22757 22 87.0 42 ............-A...G..... TTAAGCATTTGTCCGTAAAATCGGGTCAGAAACGTCTGAATT 22821 22 87.0 39 .........-..C..G....... GCCCGTTTTGTCCGTAATCGCCATTTTTCGAGCAAGTCG C [22837] 22883 23 100.0 0 ....................... | T [22898] ========== ====== ====== ====== ======================= ========================================== ================== 5 23 93.1 37 TTTACGGACAAAGCGCCATTTTT # Left flank : ATGGAACAACGACATCCAGGCAGAAAAGTTTGAAAGCTGGATCGAATGGCTCAAATACTTGATTTTCTTTGGGGCTGCATGGGCCGTAATCTACTTTATTTTCAGCATGACGAGCGACCCGCGCGTTTTTTTGGACAGTTTGAATCTGGCAATGGCGATTACGGGTTCTTTGCTTGAGCTCAATCGCAAGCGCGAGCAGTATTACGTTTGGACGATTTCATCCGTTTTTACGATTGCTCTTTGGACTCAGACGATGCTTCAAGGCGACGGCAATTTTGCTTTGATTTTCAGTTATTCCATCTTCTTCTTAAACGATATGTATGCATTCTTCAGCAAGCACGGCTGGTTTAAAAGCACGAACGAATAATTATTTGGAAAAGTCTTTTTCCTAGCTTGAATTAAACGGAAAGCTGAACGAAGGCGGTCAGTTTGCGACTGCTTTTGTCCGGCTTTTTTAAATACAGTGCTGCTCAACTGATTTTTCCAGGATCTCACTCAAA # Right flank : TATAGATGTGTCCGTAAACGGCAGTCATTTTGTCAAATGAAGTGCCTGATAAATCAGCGTGCCAAACTATTTTGGGCTGTTTCCATTAAGGAAGGCGATCGTCTTGTATACACAAAACCGGATCAGATTTGCAATTGATGGCAAATCATCCGGTTTTTCAATTTGAGGCATCGTTTTTTCAAAGCCCCTCCTTTTTTTGTGCTTAATGATAACCGCATGTGGTAAAATTGTACGGTAGAGCAGTTAATTGTAAGAGAGAAAATTTTGGGGCTGATTTTATGCAAAAAGAACCTGAAAACAAATCTGATCAGATTCCTGAGTTCTTGAAGAACGAGCGGTTGAGAAAGCTGACCCTGATTCTTTTTGGGGCTGTTGTTTTGTGCACTGCATTTTCCTTCATGCTAAATGCAGTGTTCGGATTGATTATTCTTGTTTTAAGCATCATAACTCTTGTTGTTGCTTATGACGGCTTGAAACAGATTGCTTCCGATACGTCCGAA # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.02, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTACGGACAAAGCGCCATTTTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 10953-11715 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNNQ010000140.1 Ligilactobacillus ruminis strain 1001095H_141210_H11 NODE_2644_length_22048_cov_16.8563, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 10953 36 100.0 37 .................................... AAGTGCTTTTTCGATTTTATCTTTGTTATGTTCGTTG 11026 36 100.0 37 .................................... GTAAAACATGGGTCAATGCTTGCAATGAGTTCGTTAT 11099 36 100.0 37 .................................... TTATAGCTAATTTTCTTTTTTGTTTTATCACTCCCTT 11172 36 100.0 38 .................................... TGGTGGTTAATCGTCTTGCAATGCGCAAACGTGCACGC 11246 36 100.0 36 .................................... TGAATATCTTTTCTTGTTAATTTTGCCATTTTATAA 11318 36 100.0 36 .................................... ATTTTTTAAAAAGGTGTAGTTTTCGCAAGTTTCAAT 11390 36 100.0 35 .................................... CATTTTGCAATTTGATATAATCCATTTTTAAATAC 11461 36 100.0 36 .................................... ATTATTGAGTAGTCTTTGCCTTCATCAAGTGTAACT 11533 36 100.0 37 .................................... CGATGAAAAACTTTTCACCATTGCTTGAAGTGTAAGC 11606 36 100.0 38 .................................... TCTTTTCTGATTTCAGATAAATTTTTCATTTTTCTTCC 11680 36 97.2 0 ................................G... | ========== ====== ====== ====== ==================================== ====================================== ================== 11 36 99.7 37 GATCATTACCTATCTCCGAGTTAAGGAGACGAAAAC # Left flank : TGTGACAAGGGGAGAGGTGACACCTATGAAGTACATTACTGTCATGATTATTATTCTGGTGCTGCTGCCGTTCATTGGCAAGGGCTCGCCATCGCCATGGCAACGTACATCATGTACAATTACCGTGACCGTTCGGACGGACGGGACCTTCATCGGCGGCGCCTATGAATACATCTGCAGCGTGTTCACGGAAATCGTCTTCGGCAAAATCTTTTGGGACTACCGCGGTCTGCCGTTCAACCTAGGTGGCAGAATCAATCTGCTGTACTGCTTCTTCTGGGGCATTGCGACGGTGGTTGACAAGATTAGTAATCAAATGATATTGAAAAGATTGACTATGTATTTTATAATACCAACGGGGGATTTTTTCCCTATTTTATCCGTCATTATTTGGTTATGAAATGGACAAGTCTTTGAAAAGCAGGGTGTTTCTGGCCTGCTTTTTGGGCGTTATTTTATGGACGTAACCCCCATTCTGATGCCATTTTGATATTTGATGG # Right flank : CTAAAATTTCAAAGTGAGGGGAGAGTCAACAAATAGTGTATGTGCGTTTTTCATATTTACTGTTTTTTTAATTTTGGGTAAGGCTCCGAAATTGGCAATTTTGCGGAAGTGTATCCACACTTCCTGTCCTTGCTATTTTTTAATCACATGGTGATTTCACAGGGATATAGGGCTGTTTAGCCTATTTTTTCTCCCTGTGCTGTGACCGAAGAAATTCGAGAAACCAATTATATATTTATGCTGAATGTGAGGAACTGGGGAGCACAATCCTCAGCAAGATTCCAACATCCGGAAAATGCCGTATTGCTAAAATAGCGATATGGTATTACCGGGGTGGATCTTGCTCTGGAGTAATTGAGAAATAGTGTTTAGAAATAATTGCCTTGTTCTCAAAAAACGGAAATAGTGATAATATGAATTGGAAAATAGGTATTTGTAGAACTGGTTAAGTGTATCCAGTGATGTAATTACACCTATTAAATAGTTAAAAGAGAGGAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCATTACCTATCTCCGAGTTAAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //