Array 1 143431-147035 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUNG01000001.1 Prevotella mizrahii strain LKV-178-WT-2A seq1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 143431 30 100.0 35 .............................. ACGCTCTCAATCGTACCAAAAGCATTGGTGTTCCA 143496 30 100.0 35 .............................. AGGAGTTGGCACTGCCTACCACGGACATGGAGATC 143561 30 100.0 34 .............................. GAAGGCAAAGGATGCTTCTGAGCAGCCGGAAGAA 143625 30 100.0 34 .............................. TTTCCCGAAGTATGCGCGCTGGATAAGTTGAAGA 143689 30 100.0 35 .............................. ATGTTTGGCCGAAGATGGAACATACGCTCCATGGC 143754 30 100.0 35 .............................. GGATTGGTGAGATCGACAACAGCGTCCGTGCCAAT 143819 30 100.0 34 .............................. GAACAAAGGCTTTAACCTGACGTATGACGGCACC 143883 30 100.0 35 .............................. TGTGTGATGTCGATGTTTCGGGTACCGTTCAGTTT 143948 30 100.0 34 .............................. GGTAATGCCCGCTCTGTCCGGACAGGTGGACCCA 144012 30 100.0 34 .............................. AAGATGGGGAAATCGGTAAGGTTGATGTGGATGA 144076 30 100.0 37 .............................. TATCTACCGCTTGCAGGACAATGGAGCGAACTTCAAG 144143 30 100.0 35 .............................. TTCCTGACACGAATAGCGATGGCACGTCGGCCAAT 144208 30 100.0 35 .............................. GCTATCTGCATACATGGCATTTCTCTGTGAAAGGT 144273 30 100.0 38 .............................. TCCCTTGCGAGGCTATCGCCGCTCCTGCCGACGATAAG 144341 30 100.0 34 .............................. GTGGAAGCGTTGATGTCATCATTAGTCCGCTTGG 144405 30 100.0 34 .............................. GTTTTAACTCGTTTTCGTTGTCGCGCCAGTCGAT 144469 30 100.0 35 .............................. GTGGAACAAAATACAATGGCATGGGATTAGGCCTT 144534 30 100.0 34 .............................. AACAATACAATTAAATAAACAAATAAAACATATT 144598 30 100.0 34 .............................. GAATTTGCAGATGATAACGGGCGGTAAGTGGGAA 144662 30 100.0 34 .............................. TAATAAAGACGTTATCGGTGGCACAGCCGAGGTT 144726 30 100.0 38 .............................. GACGTAACGAGTTACGATTTTACGAGCAGTTACCCCAC 144794 30 100.0 34 .............................. GGTGGGGACAGATTTATAACTTTTCAAGAATTAG 144858 30 100.0 34 .............................. AGTTTCTAAAAATGGAGAATGTATTATCCATGTG 144922 30 100.0 34 .............................. TTAAAGAACACATAGCAGAAAATAACGGGCGAGT 144986 30 100.0 36 .............................. ATCGCAAGCTCGAAGCCAAAGGTCTTGGTACCGTCC 145052 30 100.0 34 .............................. TGACAAAGGGAGAGATGGACGCTATCGAGAGCAT 145116 30 100.0 35 .............................. TTGGATAATATTTTGGAGAAAAAAGCCGATTATAA 145181 30 100.0 35 .............................. ATCTAACGAAGTCGGGGAAATAGTGCGAAATTATT 145246 30 100.0 34 .............................. TTAACAACACGCTTGCAAAACTGCAAAGTATGTT 145310 30 100.0 34 .............................. TCGTCGAGGTTGTCGAGAAACTCCCGCTGTGCCT 145374 30 100.0 34 .............................. TCCCTTGCTGGCTTCCAAATAGATTTCCGTGTAG 145438 30 100.0 36 .............................. GCGCATTGAAGTAGGCATTATTATCATTCATTTATA 145504 30 100.0 34 .............................. GGGTTAACCAGAATTTGCGCGTTGAACTGTAGGG 145568 30 100.0 37 .............................. GAGCCCCGCATCACAGAAAAGAGAAAGACTACGCGCC 145635 30 100.0 37 .............................. TCGTTGAGTGCCAGCCCGGTGCCATGCTGGATGCCCC 145702 30 100.0 35 .............................. AGTGGATGAAGGTAGCGTCGAAGTCGTTGCCCTTA 145767 30 100.0 37 .............................. GACGTGACAAGTTATGATTTTACGAGCAGTTACCCAA 145834 30 100.0 36 .............................. GACAAAGAGAAAATCGAAACATTGGAGAAATACAAT 145900 30 100.0 37 .............................. AAGTTAAGAGCAGACATTTTTTCCTGCCATTGTCTAT 145967 30 100.0 35 .............................. AAAGGCTGATACTCAGGAAGCGAGGGTGGAGACGG 146032 30 100.0 35 .............................. CCGCTAAGCGTAGATGTTGTTTTCACATTCGAACC 146097 30 100.0 34 .............................. AGACCACCAACACTCGCAAATTTAGAAGAGCCAT 146161 30 100.0 35 .............................. AGATTACGGTACAAGATTGACTTTATAGGGAGCCG 146226 30 100.0 36 .............................. TACTCACGCACACGGGGCGAGATGGTGCGCAACAGA 146292 30 100.0 37 .............................. ACGGAAAAATATGTCTATGTAGCCATACCTAAATCGG 146359 30 100.0 34 .............................. AGGCAAAGTTCGAGCAAGTGAATGGCCGCACTGC 146423 30 100.0 34 .............................. GTTAGTAGCGGATAGGAGCACTTGTAAGCGCAGT 146487 30 100.0 35 .............................. AGGCAAAGCTCGAGCAAGCGGATGGCTGCACTGCC 146552 30 100.0 36 .............................. TCTTTAATTAGCCAGTAGCAGTCGCAAAAATACGTA 146618 30 100.0 34 .............................. TAGAGATAGTCGCCGAGTGCCGAGAGTTCCACAG 146682 30 100.0 34 .............................. ACACGTTCTGCGGTTGTGGTTCCATAGTCGTGGA 146746 30 100.0 35 .............................. GCGTTGCGGTCTTCCAAGAGGAAGAACACAACCTG 146811 30 100.0 34 .............................. AATGGTATTGATTGTTTGGGCGCAATACGTGAAC 146875 30 100.0 35 .............................. GTTCGTTTGGGATAATAGAGATCATAATACGCTTT 146940 30 100.0 36 .............................. AGGCCTCGTCCATCAGGAGGATGTTCCGCTCCGTCA 147006 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ====================================== ================== 56 30 99.9 35 GTCTTAATCGAACCTTTATGGAATTGAAAT # Left flank : AGACTATAAAAAAGGAGAAGCTCATGTATGTGATATTGGTATATGATGTAGCCCAGATGCGGGTAGGAAAGATGCTGAAACTGTGCAGAAAGTATCTCTGCTGGATACAGAACTCGGTATTTGAAGGTGAGTTGTCAGAAGCCAAACTGCGGGAACTAAAATCGCAAATCGGTAGCATCATTGACGCAGATACCGACAGCGTGATAATATTTACGAATAAGATGAGTTATAATATGGACAAAGAGATCCTTGGTAAGGAACGGATGTCGACAGATAACTTCTTATAAAAGTTGTCGATGTCTACCATAGTCCGAGAATTAAGGCTCAAGAACCTTATTCTTTTGCTCTTTGACATATTGAAACAGTATTAGATAAAGGTGTTGTCGTACCCCCAGTATTTTTATATTATTCCACATCGACATATTTTTCCCGATATTTTTCGTATCTTTGCATTCGGAAACCCGAGAAAATAGGGGCTTCAGCCTCATATGTCGATGTGG # Right flank : CACTAAAAAAGGCATTGCCCCCATCTCCGAGGACAACACCTTTTAATGATATACACCACCAATCACGCCAAAAGATAATGAGGGTGGCCTACTCCATTTCTCTGATGAGAGAGTCTGGGATAAGATAAGATAAGCTATTTAATCTACTTCCTCGTCAGCCTCGTAACCGCCCATCTCACGGATGGCGTTCTTGAGCATAGTGTACTGCTCAAAGAGGTTGTTGACAGCTTCCTCGCCCTGAGTGTAGTCGTGCATAGGACTCTTGAGGAAGAAGCTCAGGAAACGCTGAATGCCATAGCGACCGGCACGGTGAGCCAGGTCAGAGAGCAGCGTCAGGTCGAGAAGCAAAGGTGCGGCAAGGATGGAGTCGCGGCAGAGGAAGTTGATCTTGATTTGCATAGGATAGCCCATCCACCCGAAGATATCGAGGTTGTCCCATCCTTCCTTGTTGTCGTTGCGTGGAGGATAATAGTTGATGCGCACCTTATGATAGATGTTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCGAACCTTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 40046-42936 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUNG01000002.1 Prevotella mizrahii strain LKV-178-WT-2A seq2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 40046 47 100.0 30 ............................................... AAAAAGCACCTCCCAAGCTTAGAAGTGCAC 40123 47 100.0 30 ............................................... AGGATGCCGTGCGCAACTTCTCGATGCGCT 40200 47 100.0 30 ............................................... AGCTCGCCTTGATCACTTCCACCCACGATA 40277 47 100.0 30 ............................................... GAAGGAAAGCCTTACATGCTGGTAGGCGGA 40354 47 100.0 30 ............................................... CCCTTTTTCCCTTGGAATTGCTGTATCACA 40431 47 100.0 28 ............................................... TAACTCGCCGTGTCCTGTAAATTTCATA 40506 47 100.0 30 ............................................... CGGGAGCGGTCTTTGTTGCCGCCCCCGCTT 40583 47 100.0 29 ............................................... AATGACCGGCGCGGTGATCAGTTCCTTTG 40659 47 100.0 30 ............................................... GCTCTCAATGAGTCTGAAGGTCGTAAATTG 40736 47 100.0 30 ............................................... GGTGTTGACCTTGCGTCCCTGGTCGGTGCT 40813 47 100.0 29 ............................................... ATGGTGGGGGCGGTTGTTGGATTCCGTTT 40889 47 100.0 30 ............................................... CTACCTACCACGCAGCGCAAACGGAATCCA 40966 47 100.0 30 ............................................... CAGGGATGATGACCAGCTTCTCAATTTTCC 41043 47 100.0 30 ............................................... GCCTCTATATGTTGGATGCGTGCGCAAATA 41120 47 100.0 30 ............................................... GAATTGCTTGCTGCTCTTAAGGCCTCTGGG 41197 47 100.0 30 ............................................... ATATTCTTGCACTACACAATTTAAGAGAGT 41274 47 100.0 31 ............................................... GTGTTCTCGCAACACATCCAGACGACCGCCA 41352 47 100.0 30 ............................................... GGAATCATGCGTTTGGTTAATCCTGCCGCA 41429 47 100.0 30 ............................................... GTGCCAGGCGGGTCAATGGTGGTGTTCTTA 41506 47 100.0 30 ............................................... AAGCCCGACTTGTGAAAGCCGGGCTTTTTT 41583 47 100.0 30 ............................................... GTCTTGGACTCCAAGAAATTGCTTCAGAAA 41660 47 100.0 30 ............................................... TAAGTAGTTGATTTTTCATAACAGTATTTA 41737 47 100.0 30 ............................................... TGGAGAGAGTGGAGAAAAATTAGAATGGAG 41814 47 100.0 30 ............................................... TGAATTAAAGGTTATGTGAAAGTATGGTTG 41891 47 100.0 30 ............................................... ACAGAAAATAAAATAGTAAAAAAATGAAAT 41968 47 100.0 30 ............................................... GCTTTGTTATCTGCTCTGCCGTGTCTTCAT 42045 47 100.0 30 ............................................... CAATATCCTTTGGCAATGTCGGCAGAGGTC 42122 47 100.0 30 ............................................... CTGCCGCAAGAATGTCCTCTGCGCTACGAC 42199 47 100.0 30 ............................................... GCCTGAGAAAGACGGTGAGCAAGGACAAGT 42276 47 97.9 29 .T............................................. GCAATCTTTATTGCCATATTATTTGATGT 42352 47 95.7 30 .T.........................................A... GCAAGCTGCACTTGAATACTGGTCAAGTGC 42429 47 97.9 29 .T............................................. GTGTCTACTGGTACTCCTCAATCTCCTAG 42505 47 97.9 30 .T............................................. AGGCAAGTGAGGAAACCATAATGATCATTT 42582 47 97.9 30 .T............................................. AGTTTTCTGTAGCGGTTCATGCAGTGATGC 42659 47 97.9 30 .T............................................. GTATAGCGTTTATACTCCGTGCTGCGCGTC 42736 47 97.9 29 .T............................................. GACGTTGAAACAGGACCGAGAGACGGCAA 42812 47 97.9 30 .T............................................. AAAACAACGTAACTATCACTAAGATTGTAA 42889 47 95.7 0 ...............................C...C........... | G [42908] ========== ====== ====== ====== =============================================== =============================== ================== 38 47 99.4 30 GCTGTTGATGTCTCTGCAAAGGTAATCAATTTTTTGCTAATCACAAC # Left flank : GCCAAATGCTTTAGTGGAGAATCGAGAAAAATCGCTTATCCTTCGTTTCCATGAAAACCCGACTTAACGAATATCGTGTCATGTGGGTATTAGTACTTTACGACTTGCCTACAGAAACCGTCCAACAACGCAAAGATGCCGCCCTTTTCAGAAAGCACATCATGGGTGATGGTTTCACCATGTTTCAGTTCTCTATCTACCTGCGTCACTGCCCTAGCATGGACAATGCACTGGTACATATTCGCCGTGTGAAGTCCATCTTACCTAAGTACGGCAATGTAGGCATTCTTTGCATCACCGACAAACAGTTCGGCGACATTCAGCTATTCATATGTAAACAAGAGAAAAATACGGCTCAACCCTACCAGCAGCTTGAGCTCTTTTAGAAATACAAAAGGGATTCCCACCCACAAGCGAGAATCCCTTCCTTCATCAACTCCGCTTTTTCTTTTCTACTCTTTGTATTAACTCTTTATTGTTCAACGCATTAAAACATTTGA # Right flank : CCGGAGGGGATGCAGGGAGTTATGTTATAAGTAAAAGTAAAAGCATAAAAAGCCCTGGCACGGCTCAGTGTCGGGGCTTTTCTTTCTTATGCGACTAAAAGTCTGTATGTCCTTTATCAGCGGCAGATGACTTTCTTTCCGTTGTGGATGTATATACCACGTGAAGGCTTAGCCACCCGCTGTCCTTGCAGGTTGAACCAGACATCCTGCTTCTCGCCACTCTCAACAGCGTTATTGATAGCTGTCGTCGTGCCGTCGTTGATGCCGATGGCCATGCTCTTGGCACTGGCAGATCCCTGCTGTATCTTGATATGTCCAAAGACAACCTCCAGCCAAGTACCACTGTTACCATAAGCATCTGCCACGGGGGTCCAGCGGAAATGGTAATAACCGGTGTGGTTAGCATAGAAGTTGACGACTCCATAGCTGGCACCATAGGTGTTCGTGTTCAGGCTCTTGCCGACATTGTTGTTGCATCGTATGATTTGCGAACCCAGGCA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTTGATGTCTCTGCAAAGGTAATCAATTTTTTGCTAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //