Array 1 8971-9324 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCRR010000004.1 Lachnospira pectinoschiza strain SL.1.13 OMCMFGFK_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 8971 30 100.0 34 .............................. CACTTGAACTTTTGCTCTCTGCAAACTCAAATCG 9035 30 100.0 35 .............................. TCTGATACAGCACTTGCCTCAACAATAGCATTAAA 9100 30 100.0 35 .............................. TTTCTAATACTGAAAATTCCCCCGGATGCTTTAAA 9165 30 100.0 34 .............................. TACGCATTAATCTGCGCTTTTATGCTTTCCGTCT 9229 30 96.7 36 .................T............ TTACGGGGTTATGTTGTTTTATGATGTTGTTAGTTA 9295 30 90.0 0 ................A........A...G | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 97.8 35 GATTAACTTTAACATGGGATGTATTGAAAC # Left flank : ATAATCGGTAGGAAGTGAGGGTATATGGCAAAGAAATTGAACTATAATTATGCATTTGTATTTTACGATGTCAATGAAAAGCGGGTGCAGAAGGTCTTTAAAATTTGCAAAAAATATTTATCGCATTATCAAAATTCTGTTTTCCGTGGAGAGATTACACCTTCAAAGCTTATCGGGTTGAAGACGGATTTAAAGAAGGTGATACAGGAAGACGAGGATTTTATCTGTATTATTAAGCTGTTTAATGAAAATGTGTTTGGCGAGGAGGTGCTTGGAAAGAAGGATAGGGAAAATGGTGAGCAGTTGATTTTGTAATACAATGAAAATTTACCAGCCGCCTATCAGTGCAAAATTGCGTGAATCCGCAAAAACAGTGGCATTGCGGTGATTTTGTAAATTTTTTTGGCAAATGGCGCGGTGGCTGGTAAAAATTTTAAAAACGTTGATAAATACTGGGGAATCTGGTATAGTGTATTGTATGGAATGCAGGAAATACGTTG # Right flank : GCCACGAACGTCCAAAACATAAGGAATAAAACACTATTTGATGAAATGTAACAATAAAAAACAACATACCCTCTATTTTTACAAAAACCATTCGACATCACCGGCTATTTATGTTATTGTAATAAAAACATTAAGAGGCAGGTAAAGATGGGCTGTATAAATGTAAAAATACATCAATAGCCTGACAGCCGCCGGAATTGGAGGAAAAGATAATGTACGAGATGAAACCGGAATATTATACAGGAATTGCCCAGATTGACGAGGAGCATAAGAAGCTTTTTGAAATCGCAGATGAAGCGTATGAGTTATATAAAAATGAATTTATACCGGACAAATATGACCATATCGCTAAGATTTTAAATGAACTGAGAGATTATACCAAGATACATTTCCAGCATGAAGAAGAATATATGAAAAGCATTAATTACAAGGGAATGTTCATGCAGAAGGTACAGCACGACCAGTTCTGCCAGAAGTTAGATGAACTGGATTTAGAGCAT # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACTTTAACATGGGATGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 2 104883-105779 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCRR010000004.1 Lachnospira pectinoschiza strain SL.1.13 OMCMFGFK_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 104883 36 100.0 36 .................................... CTATTGAAAAGAATTGTATAATAATCTTGCTAGGGA 104955 36 100.0 37 .................................... TTGTAGCAATCCATTGCCACATCATACTCATAAGTAA 105028 36 100.0 35 .................................... ACAAATTTTAATTGTTTCCTGGTTATTCATTTCTT 105099 36 100.0 35 .................................... TAAGTCGGTTAAAATGTAACCTTCAAACTTGTTTT 105170 36 100.0 39 .................................... TTGTATAAGGTCAAACTCATTGAGATACAACCTTAGAAG 105245 36 100.0 37 .................................... CTTGATTTCTGTTCCTGATTCATGCCAGCAGTTGCTT 105318 36 100.0 36 .................................... TTGTAGCTGTGTCGGTTTATTGCTGCCCACTTTAAG 105390 36 100.0 35 .................................... GTTCTTCGTATGTGATATACATCATATCTCACCTC 105461 36 100.0 35 .................................... CATCGTTGACTTGTTACTATCCATTACAAGCCCGA 105532 36 100.0 36 .................................... AACATATATTCTTGTCAATACAAAATCGAATAAATG 105604 36 100.0 34 .................................... ACAGTTTACTACTACATTAATAATGCTGTTGTTT 105674 36 91.7 35 ...........G......T.....A........... TCTCTTAAATAAGTGTAAACATACACCGAATCTGT 105745 35 83.3 0 .....G.G...G..........G.......-A.... | ========== ====== ====== ====== ==================================== ======================================= ================== 13 36 98.1 36 ATTTGAAATTAAGAAACCCCATAAGGGGACGGAAAC # Left flank : ATAACAGAATGGAGGATTTTTTATGGACGTTTTTGATTTTGACGGAAGCGGAGAACTTGAGGCTGATGAAAGAATGGCAGCGGCTGAAATATTGTGTACGAGTGCAGAGGAGCATGAAGCATTTTTTGGTGATGCAGGTGATTTTGCAACAAGTGACAGTGATGATGAGTTAGAAGATGATTTAACAATAGCAGGATTAGACATTCATGAGCTTGAATTTATGGACGAAGATGAACGGAGAGAGGCGATTGAAGATGCGGGATTAGACCCGGATGATTATGATATGTTTTAATTAGTAAAAACAAATTGCGGTCAGGGGAAGGTCTGTGGTATAATAAAGGAAATCTTGATTGTTTTATCGGAGATTTTCCCCCGCACCTTGAAAATAGGGCGTTTGCACTGGATATTAGAATGTATGTTCTTGTATAACGTGCCATTTTTATTTTTCCCCCGCAAAACGCTGCGGGAGGGCGCATGGTTACTGATGCGGCAGGGACGGG # Right flank : CCCGCTGTTCACCTATGAATAGTGGCTACGGCTCATTATTAAGATTTAAGCTCCATAGGGGACAAAAAACAATAATAAGAAACAGGAGGTTTTGATATGCTATACAGATACATTGCAGTCATTTCAGAAGCAGAGGGCGTTTTTTATGCAAAAGTTCCTGATATTGTAGGCTGTATTACAACTGCCAATAATTTGCAGGAGGCTATTATGCTGATTACAGATGCGTTAAATCTTGCATTGACAGTTTTAGAAGATGAAAATATTACACCAAATCAACCGACATTACAATCAGAGATTCAACATAATCCGTGTGATATTTTGACGGTCATACAGGCAGATACTATGAAATATCGTAAATTGCTGTCATTACCCCTCTAGGGGACGAAACATTGTTTAAGGCTTTTTATCCGCAGACGGAAGGAGAGTGCCTATGAGTTATTTATATGTAAATGACAATGGAGTAACAGTTGGTGTTGAGGCAAACAGATGTGTGGCAAAAT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGAAATTAAGAAACCCCATAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.90,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 532297-532611 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCRR010000001.1 Lachnospira pectinoschiza strain SL.1.13 OMCMFGFK_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 532297 36 100.0 34 .................................... AATAATTCTCTTTAAATTTGGAATAACTTTTTTT 532367 36 100.0 34 .................................... ATAGGTGCAACAATTGCAATAATATCGCAGCTTT 532437 36 97.2 31 ..........G......................... TTAAAAGCGATGACCATGCTGCAGCTGATAA 532504 36 100.0 36 .................................... AACCACTCTTTGATGGCTTTTTTAAATTCTTCTGTA 532576 36 94.4 0 ..........GT........................ | ========== ====== ====== ====== ==================================== ==================================== ================== 5 36 98.3 34 GTTTGGAAGAACAGAAACCCCAAAGGGGATTGAAAC # Left flank : ATTGAGGAGGTGGAGTAATGACACGAAAAAAGATTGGCAGCAGAGATTTCGGGTAAAATTATTATCCGGGTGCAGTGACAAATGCAAGAAGAACAGTAGAAAAACTCTTGGCGGAGGGGCTGCCGGGGTTGGAAGACATGGATGAGCGAAATCGGTGGTTACAAAGAAAATGCCTGACCTTTTCAAATGTATATGAAGCAATTGAATTTTTAGAAAGCTTGGAAAAGTTGTAATCATAATTTTGTGGTTGAAAAAGCAGTAGATGAAAAGATAAGAGAAACAACCCGGAGGGTATTTGCGATTTGCTATTGTTTTTACAGGAAATTTCCATTATAATAAATAAAGGCGATAAAAGAAAAAATGAATTTTACCGCGCACCGCATGAATACTGGGCTGAGTGACATTTTTAATGAAATTTCAGTGGGAAAATTGCAGAAAAATGATTCTTCCCCGCAAATCGCTAATTTAGCCCGCATAAACACTGGGATTGCAGAGATGCT # Right flank : CGTCTTATATTTAACATTTGATATTCCCAATTTTGGTTTGAAAGAGCAGAATTCTAGAAGAAGGCTAAAACAGTAATCTTGGTAATGATGTTTTAAAGGAATATGAAATACAAGAAAAATTAGTGGATTTATGAAATATAAAAATCAGTGAGGTGCATATGAAAAATTCTATTATGTTATTATTTTTAGGAACTTATAAGGAAGGAGAGAATCTTAAAGAGGGAGATTATAAATATAAAGACGGTATTTCATACAAAGGGATACAGACGGCAGATGCTCCGGTAAGCTGTTTGTTTGAATGTGCTCAAAAAGATGGTAATCCTATTAATAAAATTTTCTGCATTGTATCAGAGGACGTATATACAAAAAAGAAAAAGGTGGAAGAAAAAACAGGTACATCATATGAACTTTTTATTAAGGAAAATGTAGATGTTATCAATGAATCAAGGAAAGATGATGAAAAAATTGAGATAATTCCGATTTATTATGATTTTAAACCA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGAAGAACAGAAACCCCAAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 2 543893-544493 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCRR010000001.1 Lachnospira pectinoschiza strain SL.1.13 OMCMFGFK_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 543893 36 94.4 35 .............C.......A.............. TTATACATTCTGTAAAAATCAACAAATTCTCTCCA 543964 36 97.2 37 .............C...................... TCTCGGCAATAATTGCCTTTCCTTCCTCGGTTGGGAG 544037 36 100.0 33 .................................... TAAATTGCAAATTGTATCCTGCGCCGAAAAATA 544106 36 100.0 34 .................................... ATATACTTTATATCCTTTTCTTCCTGAGAAATCT 544176 36 100.0 35 .................................... TGATAAGACCGTCAAAATTCATCATAGGACGCATA 544247 36 94.4 34 .............C.......A.............. TATAAAAATTCATAGTCTCATCAGTATCTACTAC 544317 36 97.2 32 .............C...................... TTCCTGTTCCCGGTGTTGCAGTCCCCGGTGTT 544385 36 97.2 37 ........................A........... CATGCATTGCCTTTTATTAGTGCAATGTCATTTCCTA 544458 36 88.9 0 ........A....C.......A.........A.... | ========== ====== ====== ====== ==================================== ===================================== ================== 9 36 96.6 35 GTTTAGAAGGACATTAACCCCGAAGGGGATTGAAAC # Left flank : GGAGGGCAGTTATTGTAGATGCAACGGTAATGAGCGCAGTAAATAAGCATATCATAAGGCGGGAGCATTTTGAACAGGAAGATGGAAAACCGGGGATTTATTTTACAAAGGAAGGCGTGCGTATTTTTATCGAAAGAATGGAGCAGAAGTTAAGTACAAAAATACAGTATCTTCCATATATTGATTATCCACTGGATTTCCGCCATGCGATTGATATGCAGGCAGTACAGCTGATTAAGGCGATAGAAGCGGAGGATGCTTCGCTATATCAGCCGTTGTGGATTCGGTAAAAATTATATATTTGCGGTTGTATTTTAAATAAAAATCCTTTATAATAAATAAAGTAAATTGCGGTAAAAATTGAATTTTACCGCGCACCGCATGAATACTGAGCTGGCGGGCATTTTGAATGAAATTTGCAGAAGGGAAATCATCAAAATTCATTCTTCCCCGCAAACTGCCATTTTAGCCCGCATAAACACTGGGATTGCAGAGATGCT # Right flank : CTCTATAACCTGATTATCAGTGAGCTGATACTTATAACAACAGAACAGCTAAGGGGGATATGGGATTGGTAGATTTTTTTAAAGTGGATGAAAAAGTGGCAGATGATAGTATTCTGGTGCTGATTATTTATGATATTGAGAATAATAAAAAACGGACCAAACTGGCAAAACATTTGCAAAGATATGGATTTCGTGTGCAGAAATCAGCCTTTGAAGGCATTATAAAAGAGAATAAGTATGACAAGCTGGTAAAAGAGCTGGCAGTCTATGGAAGTGATAAAGACAGTGTGAGAATTTATAAAATCAGGGGAAGCAGCGAAGTTGTTATATATGGTAATGACAAGGTAGAAAGACTGCCAAAATCAATTGTTGTTTAATTTATAAAAATGACACTATTCATAATAACCCACCCGCTTTTTAAGGGAGTCTATAATATCCTTTCTAAGGGATTCCGGTTTCAATACAACAGCGGCTCTGCCGTATCCATAAATCCATGAGCG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:0, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAAGGACATTAACCCCGAAGGGGATTGAAAC # Alternate repeat : GTTTAGAAGGACACTAACCCCAAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 10697-11312 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCRR010000006.1 Lachnospira pectinoschiza strain SL.1.13 OMCMFGFK_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 10697 30 100.0 35 .............................. CGCCTTGGGATGGAATACGACAACGGCGTTGGGAA 10762 30 100.0 35 .............................. TTACCTCCCTTTATTGCAAATATCTTTCTCGCCGT 10827 30 100.0 35 .............................. ATGTGTCCGGTTCCCGCTTTTATTACGGCCTTTTC 10892 30 100.0 34 .............................. TCACCTGCAATGATTTTAAAACAATTCTTGACTT 10956 30 100.0 34 .............................. GACAAACAGTGTTTATCATACATAAAGTCAGTAG 11020 30 96.7 36 ....................A......... CAAAAATAGGAAGTCCCTATTTTTAAAAACCTAAAT 11086 30 100.0 35 .............................. ATCTGATCCATATAGTTTTCAAGTTCGGTTTTCTT 11151 30 100.0 35 .............................. AGCCTGACGGCAACAGTAAATGCCAACACGACTGC 11216 30 100.0 37 .............................. AGTAACAGCGGAGCGGATTTTAGAGCCGTGCCTGAAA 11283 30 76.7 0 ......T........GAA..AC.......T | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 97.3 35 GATAAACATTAACATAGGATGTATTGAAAC # Left flank : GTAATTTTACTGCTACAAAAATTTCGACAGATTTTAGCTTTTTCAACTCTATAGGCTTTTTGAGAAGTTTGGTTTTGATGAAGCATTTGGAAGAAGTGCAGTTATGCAATTTCTTGAGCTGAAAGGTTCAGGTGATTCAAAATTTCTTTCCAATCTGATGCAGGCAGATATTATTGAACTGGTATCCGGTCGCGGAAAGGGGAAATATAAGTTCAAAAAGTAATTTGATTATGAAGAAAGATTGAGTGAAAAGTCTTTATGATAAAACACTGTTGACTGAAGAAATGTGGGGAAATTATTAGAAAATTGATACGGATACTTAGAAAAAATACCAGCTGGAAAATATTGAAGGATAAAGCAAAACCGCAGTATATGGGATTTGTGTGTCATTTTTATTTAAAAACAATAAAATGGGTTATCGGCTGGTAAAAAATCGAAAAGAGTTGATAAATACTGGAAAAGTTGGTATAGTTATTCTTAGAAATGGCGGAAATACGTTG # Right flank : TATCCATATGAAAACTGTAAATAAGACATCATTAAGATAAATTGGAGCGCATAGCATTGATTCGGATGGGAACAATACTAGAAAAATGAAAAATATAGTTGCATGTACCAGAGCGGCAAGGGGGGAATAGTACATAACGATTAGCACAACTTATCAATAATCCGGGTAGAAGGAATTGATATATCATTTTAGAAATACTATAATGAAATTATCAAGAAAAAGGAGTTGATAATTTTGAGTAAAAATTTAATTATCTATTATTCACGTAAAGGTCAAAACTATGTAAATGGCAGAATAGAGAGCCTTACGAAAGGAAACACGGAAATTTGTGCAGAATTTATTCAAAAGGCAGTTGGCGGAGATTTATTTGAGGTTGAAACCGTCAATGGTTATTCGTCAGATTATCATGCATGTACAGCAGAGGCAAAGACGGAGTATGAAAACAATACACGTCCGGAGCTTAAAGCATATCTTAAAGACATCAGCGGGTATGACAATAT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAACATTAACATAGGATGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //