Array 1 15045-15194 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPSU01000027.1 Lactobacillus helveticus strain AJT Scaffold1_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15045 29 100.0 32 ............................. AAGATAACTCAAGTTACAATGAGAGTAATTAA 15106 29 100.0 32 ............................. AATTCAATGAGTGAAACTTCAGTTTCGTTATA 15167 28 79.3 0 .....................-CA.C.AA | ========== ====== ====== ====== ============================= ================================ ================== 3 29 93.1 33 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GCTAGTTAAGTAGTGATATCCCTTTTTAGCATGATGATCAACTTGAGTTAAAGCAACATCCTTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTAATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATTGCTAACAGCATCGGCTTGAACGTGATTAGTAGAAATAATTCCTGCACCAAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGTGTTTTAGAAGTTTTTAAATTAGGAAGGAAAAATTTAAAATGAGTAGAAGATATAAATAAAAAAGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : AAAACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAATATTTCTTCGCTGCATCGCTCATGCGATCAGGCGTCCAGACCGGATACCAAACAAATTCAACATCAACATTTTTTATTTCAGGCACTTTTTTAACTGCCTGAGTAATACTATCAATTAGGTAGCCAGTTAACGGACAAGTAGGGGTAGTCAAAGTCATATTGATTAAACAGATTCCATCTTTGTCCAGATCGATTTCATAAATTAAACCTAGATTGACTACATCAACATTCAATTCAGGATCGATAACTGTCGCCAATTGATTGATAATATCGTTTTTAATTGTTTCACCGTCACGCATTTTATCACGCATCCTTGCCAAAAATTTTAGCTTTGATTGCTTGGCCGGTTGGAGTACCAGCTAAGCCACCGATTCCGGTCTCACGCAGGGATGCTGGCATTTGATGACCAACTTTTTTCATAGCATCGATACATTCGTCGGCTGGGATCA # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16356-16584 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPSU01000018.1 Lactobacillus helveticus strain AJT Scaffold1_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 16356 30 100.0 36 .............................. AAAGGCAATAAAAAGCGCTATGTCCCACTTGATGAC 16422 30 100.0 36 .............................. CACTTATCGCTCTCACAAGATGGTTCTTATCAGGCT 16488 30 100.0 37 .............................. ACAAAAGAAATGTATAAGTGGCTATCAAACTTCTTTG 16555 30 96.7 0 ....................G......... | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 99.2 37 GTTTTTATCTAACTTAAGAGAAATGTAAAT # Left flank : GTTTCCAAATCTAGGTCGACGAGAAGATTTGGTAAATTTTGAAGAAGTAAAAATCGTTGATGTAGAAAAAAAGGATGAAGACTTAACTGTAAATCATGGTGCGTATATACCAGTTGAAATGTCTGAAAATATCGGTCTTGAAAATGAAGGTATTGGATATAAAGGAACGCATTATTACTTAAATAAGGACTATAAACTGGTAACGATAAAAAAAGGTCAGACACAACGTCGATGGAATAAAGTTGAAGTTATATATGCTTCTGGGTTTACGGTTTATAAGAGTTACGTTGATGAAGATAATAATGTAGTGTTCTTAGTTTAAAATCTGTCGATGTCCAATAATCAGTTTTTACCAGTAGATCGACAGATGTGATAAAGCCTTATGTAATAGTTTTTCTAGAGATTCCAATTAATTTAGACTCAAAATGATGATATGTTTTGGGAGGTCGATAGAAATCATATTACAAAGCATTGATGTATAAGACTTGGCAAGTGGAACT # Right flank : TCGCTCTCTAATAGGGGGTTGTACATATCCTTTATTTAACTTACGAGAATATACGATATTAACCATAAAGATAGAAAGTGTGAAAGGATGAATGAATATTTAGCTAAATCTTTAGACCAATCTGAAGGAAATCATTGTGAGACGATCGTTGAACATACTAATAATTTGTTAAAGCAATATAGTTTATTAAAGCAAGCTTATCCAGATATATTTCAAAATTTTTGGCTTAGTCAAGATCGATTTAACGATATGACAAAACAGGTAGATATTCGTAGTAAAGACGATTGGCGGCTTTTAGAAATTGCTTGTAGCTATCACGACTTAGGAAAAATGAACCTACGCTTTCAGAAAAAGGTAAAAGCAGGGCAGAGCTTTTGTAAAGGTGAAATTCCGCATGCATTGTTAAGTATTACGATGCTTCCAATTGATGAATTACAGAAGCATTATACTAAAGATCAAATCATAGCATTAATTTTTGCAATAAAGTGGCACCATGAACG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAACTTAAGAGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 21078-22293 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPSU01000018.1 Lactobacillus helveticus strain AJT Scaffold1_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 21078 30 100.0 35 .............................. ACTTAACAGGAAACGAAGCAGGTTCAAGCGATGAT 21143 30 100.0 36 .............................. GTTGATTCTAGTGCAATATCTATTGCTTTGAGCTGA 21209 30 100.0 36 .............................. AAAGAAAACGGGCGGGACTACTTACTTAAAATAAGC 21275 30 100.0 35 .............................. TATTCGATGTAGTCATCATAAATACAAATGGTTGG 21340 30 100.0 36 .............................. TAAATTAGCACGGGCGTAAGACGCTACAAAAACACC 21406 30 100.0 35 .............................. TAGCTTCTTTTTGATACGATTGAGCTTGACATCAC 21471 30 100.0 40 .............................. CCAGAAGATGCTAAAGAACTTACTAAGGTTGCAACTCCAG 21541 30 100.0 35 .............................. AGCAAGCCGGATCAATGGATTAAAGCCGTATATGC 21606 30 100.0 35 .............................. AGATTTTCCAGCTTGTGTTGGTATTAATGTATTTT 21671 30 100.0 36 .............................. AAATAAAATACACGGTAATAAGTGGAAACCACTATT 21737 30 100.0 35 .............................. TTAATTCTTACTAACTTTAAACCTTACGCTTACTA 21802 30 100.0 36 .............................. ACAAATTTTTACATACATTCATGAGAAAACCACACC 21868 30 100.0 35 .............................. GAACAACCAGTAGAGTCAACTCAACCAGAACAGCC 21933 30 100.0 36 .............................. ATTAACTTTAAATGAAATGATTAGTCACATGCAGAA 21999 30 100.0 35 .............................. TAATTCAGGTGGTAACGGAATGCTTGAACCCATTG 22064 30 100.0 36 .............................. AAACTTGAATGATCTATAGTACCTCTTTTTGAGTGA 22130 30 90.0 38 ............T.............G..T TTTTGAAAGTTTAATCTAAAAGTTTTAGTAGTTGGTAG 22198 30 83.3 36 ..C.........TC....G..........T AAAGCCGAATTTTACACCAACTTTACTAAATATGCT 22264 30 73.3 0 .A......C.......G...G..AA...TT | ========== ====== ====== ====== ============================== ======================================== ================== 19 30 97.2 36 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : CCTATGAGCCTTATGTTATGGGATGGTAATAGATATGTATGTGATTCTGGTTTACGATATCGTAATGGATAAACAAGGTGCTAAAGTAAGTAGACATGTTTTCAAAATATGTAAAAAGTATTTAACTCATGTTCAAAATTCAGTATTCGAAGGTGAACTAACCAAGTCCCAGCTTGAAAGCTTGAAGAATGAGTTGGATAGATGGATTCGACAGAACGTTGATTCAGTGATTATATTCAAAAATAGAAATAAAGATTGGCTTGATAAAGAATTTATGGGTCAGGATTTAACTGATTTAACGTCGGATATATTCTAAAGAAGAATCTGTCGATGTAAGATACGAAGAAAATCCTGGGAGATCGACAGATTTGCAAAATGCCGGTACAATGATATTTGTGCGATTTGTCTAATGATTTTAGTGATTTTTGGATGCGTTTTTGGTTAGGTCGACAGATAGGGCCGTTGAATCTATTGATACAGTAGGACTGGTAGTTGCAACT # Right flank : TGTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGGGAAGGAAACTACAATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGAGAACAATTTTTATAAAAGGGGAATAAAATGGCAGATGAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCCTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCGGATGGCCTGCACACTAATGCCATTTACGCTTTTAAGAACATGCTCGATGTCCTTTTAAAAGACGTTGATCCAACCCACGTATTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGTTGAATACAAAGGTGGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGTATTAAAACTTATGAATTGAAGAATTATGAAGCA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //