Array 1 2896524-2896195 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066794.1 Erwinia amylovora strain 17-2187 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2896523 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 2896463 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 2896403 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 2896343 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 2896283 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 2896222 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2907971-2905987 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066794.1 Erwinia amylovora strain 17-2187 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2907970 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 2907909 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 2907848 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 2907787 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 2907726 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 2907665 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 2907604 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 2907542 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 2907481 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 2907420 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 2907359 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 2907298 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 2907237 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 2907176 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 2907115 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 2907054 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 2906993 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 2906931 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 2906870 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 2906809 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 2906748 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 2906687 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 2906626 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 2906564 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 2906503 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 2906442 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 2906381 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 2906320 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGAGCT 2906259 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 2906198 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 2906137 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 2906076 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 2906015 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2921040-2918878 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066794.1 Erwinia amylovora strain 17-2187 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2921039 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 2920978 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 2920917 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 2920856 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 2920795 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 2920734 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 2920673 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 2920612 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 2920551 29 100.0 31 ............................. ACAAAAGACAACACCCCCCTTACCCCCCACG 2920491 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 2920430 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 2920369 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 2920308 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 2920247 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 2920186 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 2920125 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 2920064 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 2920003 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 2919942 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 2919881 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 2919820 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 2919759 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 2919698 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 2919637 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 2919576 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 2919515 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 2919454 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 2919393 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 2919332 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 2919271 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 2919210 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 2919149 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 2919088 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 2919027 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 2918966 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 2918905 28 93.1 0 ...........A........-........ | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //