Array 1 11769-14103 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDYQ01000001.1 Campylobacter concisus strain Lasto127.99 Contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 11769 30 100.0 38 .............................. TGGGAACAAACTATGATAGCGACATTGCAACGCTTATA 11837 30 100.0 34 .............................. GTTCGTCCAGCCTTTTCGAGCCGTGCAACAAACG 11901 30 100.0 37 .............................. TCTTCGTTTAGATCCTTAAAACATTCAGAACAAATAT 11968 30 100.0 36 .............................. TATTCTTAGAATCTGAAGCATTTAAATCAACAAACC 12034 30 100.0 36 .............................. TAAATATACTTGATTTCAGCAGTGGAAACGGCAGTT 12100 30 100.0 35 .............................. TACCATTCTGGCCAAAGCTCAAATAAAAAATCATT 12165 30 100.0 35 .............................. TCTTTTGAATCATAATTAAACTCTGAAAAAATATC 12230 30 100.0 38 .............................. TTAATTTGACAAGAGCCAACCATTTGGCGGACTTCGTC 12298 30 100.0 35 .............................. AAGAAACTGGTAAGCTTGATATCACTGCTTCATCT 12363 30 100.0 34 .............................. TCAAGATATCTATCTCATTACGCAAGACTTAACT 12427 30 100.0 37 .............................. AACAGACAAATTTGAAAAAGCTTTTAGAAGATCACGG 12494 30 100.0 36 .............................. CAAAAATCATATCTTCGCCAGTTTTGACGGCAAAAA 12560 30 100.0 35 .............................. CGTTGCTTAGAAGTAGTCTTTTTGTTGATACCGCT 12625 30 100.0 35 .............................. AACAATTCATCGCAAATTTTTAAAATTTGCCTTTG 12690 30 100.0 38 .............................. AAGAGAGTATCCAGATACAACAACTAAGGAGTAATATA 12758 30 100.0 36 .............................. ACGAAGAAGCTAAAGCTATAGATCAAGCAGAACTTC 12824 30 100.0 33 .............................. CCTTGCCTAGCGAGTATCATAAGCAAAAGCTTA 12887 30 100.0 36 .............................. AAAAAATGTAAAGTAATAATAAGGCCTTTAGTATTC 12953 30 100.0 36 .............................. AATGATTTGACTGCATCGTCTTGCTTTTGCCAGTAT 13019 30 100.0 35 .............................. AAATCGATAGCCAAAGAAAACGGCTATAACATCAA 13084 30 100.0 36 .............................. AGAAATGCGATGAATAGAACGCTCACAAAAGTATCA 13150 30 100.0 37 .............................. ATACTATTGATTCAGGTAATAATGTAACTAATTCTAT 13217 30 100.0 37 .............................. TCGAATGTAGGGATACTATACGCTCTATTAAAATCAT 13284 30 100.0 36 .............................. ATAATAACCATTTTAGAAAAAGTGACAGCACGAAGA 13350 30 100.0 36 .............................. TGGTTATAGATACGGTATCTATAATACAGATACGCC 13416 30 100.0 36 .............................. CTGCCAAGCTAAAGGATATGTCTAAGCCTATCCCTA 13482 30 100.0 35 .............................. CAAAACCGCTTAGAGCAGTCAAATTTATCGGCGGC 13547 30 100.0 37 .............................. AAGATGAACTTTGAGAGAGAATATCTTCTAATATAAG 13614 30 100.0 34 .............................. TCTCGCAAGCGTTATATTTTTTTGTATGATTGAT 13678 30 100.0 37 .............................. GCCTTTGTTGTGCCTATTTATGCTTCTTTTGTGGCTT 13745 30 100.0 36 .............................. ATGTTAAAAATCGTGTTGATGCTTCTTTGAGCCTTG 13811 30 100.0 38 .............................. TTAGGAAATGCAATAGGAAATAATGTTTTTCCACCATT 13879 30 100.0 34 .............................. ATGATTGACGTAACAAGCCGTAAGATAGGCATGT 13943 30 100.0 35 .............................. TAAGAAATTTCATAAGAAATCCTTAAAAAACCTTT 14008 30 96.7 36 ...............A.............. AATCTTGATCGTCCTGTTGAAATTTCTTTGCCAGCA 14074 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 36 30 99.9 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGCGATACGCTGATTTTTAATATGCTAAATAAAAAAGAGATCACCGCAAAGGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGTAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCGCGCCTTTGCGAGACGCTCACGGTGGGCAGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAATAAGCTTAAAAAGTGCATCTGCGAGGACGCGCCTTATGAGGGCTTTAGGTGGGAGTGAAATCGCATTTTAATAAAGCTTTTTTTAAGATTTTAGAATACTTGAAATTTAGGGCTTGGCGTATTTATGTGTGGCTAAAATTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAATGCCTATAAAATAGGCTTTTTGGTGCG # Right flank : CTTCCACTCTATCAATGCCCTAGGATCATTTGTTAGGATTAGAATTTACCGATATTATGTAGCATCTGCACAAAGATTTTTAATTACTTATGAAAATTATATTTGAATTAGTTTTATAATTTTTCCCTTTAAATTTAAATTCAATAGGAATAAGTTTAAAATTATTTATAAAACTATTTATCGCTGGAGATAACAAAGTTATATTTCGCTTTAGTTTCCACGATTCAGCATAGTTCTTATTATCATATAAAACCACAAACAACCTATTTTCCGCTCCAAATCGCATCTCACCTTGATTTTCATAAAGCCATTTTATTAATCCTTTTTTATCTTTTTTAATATTTTTAAAAATATCTCTTATTTTATCTTGATAATCGCTTAATGCTTGTTGAGCCCTAGTGTCACTTTTTGCAATATCATTCATTTGAGATAAGATAACGCCTCTAATAGATGTTTCATTACTTTTTTTATCAAATGTTATATTTAGTTCGTTAGCTTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 18593-19209 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDYQ01000001.1 Campylobacter concisus strain Lasto127.99 Contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 18593 30 100.0 35 .............................. GTGCGACGCAGCAGATAACAAAATCACTGCTTGAT 18658 30 100.0 37 .............................. CTGCTGGGGCTGGTGGTATCGTTGCTGGTGCTGCTTT 18725 30 100.0 36 .............................. TCCATAGACCTGCTGAACTACCTGAGAATGCTACAG 18791 30 96.7 34 ......G....................... TAGAGATACTGGCGTTTTTACTTCTGATTTTTGG 18855 30 96.7 36 ....T......................... CGCCCCTAAACTCCAAAGCTATACAAGCCCTAAATA 18921 30 100.0 35 .............................. ATAGTAACTTCTAGCTCTTTTCCGCTTTCAAACTC 18986 30 96.7 36 ...........................G.. CTAACTACGTTTTCTTGAATTTGGATATATTTCATC 19052 30 100.0 34 .............................. ATGCAACATTTGCAGCATCATCTATGATACTAAG 19116 30 100.0 34 .............................. TATAGAAACCGCATAGGCTACTTTTCAAGCCGTG 19180 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 99.0 35 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : ATTTTACTCCGTTATCGGTAAATAACGAGGCAGTTCCTCTTTTTATGAGCTTTGAAATTAAAGAGGATATGTTTTGCCTATACTTGGCTATAAGAGCGTCATCTACTTCCTTATCTTTAAAAACATACTCGGCTATTTCATTTACAGTGCTAGGCTTTATCTTTAACACTCTATAATCCTACGATTTAATTCTCCGTGAGGAAAATACGAAGCATTACTAATTCTTTTAGCTCGAATGAACGTAGTTTTATAACTAGGGTCAAATATAGTAATAGCCCTATCTATTGTTTCAAGCTCGGATTTTAGCTTTGAGATTATATCTTGATAATATTTGATATTTCCTTGAAGCTCGGAGTGCTTAGATACTAGAGCGGATATTACGTGAGATTCGGCCATATAAAATCCTTTATGGTATGCTATAATAGGCTGAATTTTAGCGGATTTTAGAATGAAAGTCTTGTGCGGATGCTACATAATACCGCCATTTTGGCGTAAATTTT # Right flank : CCCACCAAACATGGTTGACAACAACCGCATTCACTCTTTTAATAGTCGTTTTTTCGGGGCAGTTTCATATAAATTTTTAGTTGGCAAAGTTAGATGGCAGCTATTTTGACACAATTTAGAAAAACGCCTTGACCAAAGATTAAAATAAAGCAAATTACCACATTAATTTTGAAGAAGGTCGTAATATCTTTTGTCAATTATAATTAAAACAAAAAATATATGGATTTATAAAACCCACTTGTAAAGACAAGCAGGTTTTAAAATATTTTATTTCTCTAGTTTTTCTTTAAGTTTTTCTTTTTTAGATTTAGCTTTTGAAGCAGCTTTTTCTTTCTTTTCTTTTACTTTGTCAACAACTTTGTCTTTTTCATCTTTTGCTTTTTCACCCATACTAGTTTCATCTTCTTTGTTGGAAGTTAGCTCTTCTTTAGTTTTAGAAGCTTTCTTTTTAAATTTATCTTTTTTATCAGAGATTTTTTCTTTCATCTCGTCTTTTGCCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //