Array 1 2500-431 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYN01000236.1 Campylobacter concisus strain AAUH-49UCil-a 1109129, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2499 30 100.0 38 .............................. ATAGCTTTTTTGATGAAATTGTTGCAAAAGCGACTAAA 2431 30 100.0 35 .............................. TAACAATTCAAGCCTTGATATGTAAAGCCAAATTT 2366 30 100.0 35 .............................. AAAGATATAACAACAATTTTAGAGAAGCACAAAGC 2301 30 100.0 34 .............................. TGGGTTGTGTAGGTATTACTCTTTTGGCTGCCTA 2237 30 100.0 35 .............................. CTAAAGAAAATTTGGATAAGTGCGCTTCTGCTATG 2172 30 100.0 34 .............................. TTTATTTTAACGTTTATGGGGTGGTAGGATATGC 2108 30 100.0 36 .............................. TCTTGTAAGAATATATGGCAGTTTGAGAAAGAAAGA 2042 30 100.0 35 .............................. TCTCAAAAAAAGCATCAATTCTCTCTTTTGCTTTA 1977 30 100.0 38 .............................. GTGCCTTTATCGGCTGTTTCTAAACCTTTTTGCCAAAG 1909 30 100.0 34 .............................. CATTTTACAAGAAAAACATCATCAGCATTATATG 1845 30 100.0 34 .............................. AAACAACCGAAAGTATTTGAATTTCAACTTTATA 1781 30 100.0 35 .............................. ACTAAAGATAATGGAGTGCTTGAGAAAACTAACTC 1716 30 100.0 35 .............................. CACTATGGAATTTACTTATTTCATTGACGTAATTT 1651 30 100.0 37 .............................. ACGAGGGCTTTAAAGAGCGTGAATATCCAGAAGTACA 1584 30 100.0 38 .............................. AACGAGTGGATCACTTCAGCGCAAAACCCAAGCGTTGC 1516 30 100.0 34 .............................. AAATTCCTATCGAACAAGTATCATTTACGCTAGG 1452 30 100.0 36 .............................. AATGCTGAAAGAAGCGCACGTGCCAAAGTAGAAGTA 1386 30 100.0 34 .............................. CTATAATTATCATTAGTCCGATATAGAGAATTTC 1322 30 100.0 35 .............................. AGCTCTCCAGCCAAACAAGTTGGGAAAAAAGTTTT 1257 30 100.0 37 .............................. TATGGCTTTTGCATCACTTTTAAATACTCCATCGTCA 1190 30 100.0 36 .............................. TTATTTGAAGAGTTGCCACTCTCTCCGCTAGAGTTG 1124 30 100.0 38 .............................. AGTATCTTTTTTCAGTAGAGCAAGACAGCGAAATAAAC 1056 30 100.0 37 .............................. AGCTCTTTCTTTGAAACAATGGGAGTTAGAGATGAAC 989 30 100.0 39 .............................. GAAATTGTTAAATCATCTACACCTGAATATTCTAAAATT 920 30 100.0 37 .............................. CATTTATACTGACTTAGCTAAGAAACGTGGAGATGCT 853 30 100.0 40 .............................. AAATTTCGGCGCTCTGCGATCGTGCCTTGACGGATGGAGC 783 30 100.0 34 .............................. ACAAGCTAAGCAGGCAAAAAAGTTTTATAAGAAA 719 30 100.0 35 .............................. ATAGCAGACACGGAAGAATTAGGAATTTGATTAAA 654 30 100.0 34 .............................. CATCACAAAAAGCATTCCAAGCACCAAGAGATTT 590 30 100.0 36 .............................. TATCGTTTTGCACCACTATATTTATCACTTTTGGAT 524 30 100.0 34 .............................. GACGAGGACGCTAAATTTAAGCTGCCTCCGCTAA 460 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 32 30 100.0 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCACTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGCGACACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAGGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCGCGCCTTTGCGAGACGCTCACGGTGGGTGGCAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGTGAGGCAAATAAACTCAAGAAGTGCATCTGCGAGGACGCGCCTTATGAAGGATTTAGGTGGGAGTGAAATCGCATTTTGATAAAGCGTTTTTTAAGATTTTAAAAAACTTGAATTTTAGGGCTTAGCGTATTTGCACATGGCTAAATTTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAACGCCTATAAAATAGGCTTTTTGGTGCT # Right flank : CAACACATAAGTGACGATTTAATTTTCATAGAAGAGATTTAAATAATAGATCAAATAAACAACAATTGCTATCTTACAAAGATGTATCAAACTGATGATAATATTGTTTTATGCAGATACTTCGAAAAACCAAAACCCCAGCCAATACAGCAAAAAAAGAAACTAGAAATAATAATGAAATAGACTAAGCATAAACCAGCTTAATATCAAGAGCATTAACAACCTTAAATATACTTTCAAATCTAGGCTTTGAATTCTCTTTAAACATCTTATAAAAGCTTTCTCTATTTAAATTTGCTTTCTTTGCAACGTTTTCAATACCTTTTGACTTTGCTATATAAAATAATGCTCTTTTAAATTCTTCAATATCGCCATCGGCTAAGACTTGATTTAAATACTCTTTTCTTAATTCATCAGTTGTTAAATAGTCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 684-322 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYN01000251.1 Campylobacter concisus strain AAUH-49UCil-a 1109144, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 683 30 100.0 37 .............................. TATGACGATCAAAATTTATCACAAAATATAAGCTTTG 616 30 100.0 37 .............................. TGGCTACCAAGATTGGTTATGGTGCAGAGGCAGTGAG 549 30 100.0 37 .............................. CACGCCGTCTTTTTTATGTGGCTCAAAGCATCTTATA 482 30 100.0 35 .............................. GGGTTTGCTTTAGAAATGTTGTAGGGGGCTATTGG 417 30 93.3 36 .C..T......................... CAAGATCTGATAAGTGCGATAGAACAGAGGCTAAAT 351 30 93.3 0 ........TC.................... | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.8 37 GTTTCAAACTCCAACGGAGTAAATTCTAAT # Left flank : GCAAAAGACGAGATGAAAGATAAAATCTCTGATAAAAAAGATAAATTAAAAAAGAAAGCTTCTAAAACTAAAGAAGAGCTAGCTTCTAGCAAAGAAGATGAAACTAGTATGGGTGAAAAAGCAAAAGATGGAAAAGACAAAGTTGTTGACAAAGTAAAAGAAAAGAAAGAAAAAGCTGCTTCAAAAGCTAAATCTAAAAAAGAAAAACTTAAAGAAAAACTAGAGAAATAAAACATTTTAAAGCCTACTTGTCTTTACAAGTGGGTTTTATAAATTCATATATTTTTTTGTTTTAATTATAATTGACAAAAATTATCACAACCTTCTTCAATTTCATTGATCCGATAATTTGCTTTATTTTATCTTTTTTCAAGGCGTTTTTCTAAATTGTGTCAAAATAGCTGCCATCTGACTTTGCCAACTAAAAATTTATATAGAACTGCCCCGAAAAAACGACTATCAAAAGAGTGATTGCGGTTGTCGTCAACCATGTTTGGTGG # Right flank : TGAACCGCCGATCTTCGGGTTATGAGTGTTATGCGCTATTTTTTATAAGTAGCCATTAAGCTACATTTGTTAAAATTTGCCCTATGAAAGTATTAAAAAGTTCAACATTTGATAAGTGGTTGCATAAGTTAAATAATCCTATTGTCAAGGTTTCTATATTAAGAAGATTAGAGCAGATAGAAGCAAAAGATCATTTAGGGGATTATAAATTTATCGATACAGACTTATGCGAACTTAGATTTTTTAATCGTGGTGGGTTAAGGATATTTTTTACTTTTGATGGCGATGAAATAATTATATTGTTAAATGCTGGCGATAAAGA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACTCCAACGGAGTAAATTCTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 6803-7138 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYN01000207.1 Campylobacter concisus strain AAUH-49UCil-a 1109100, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================== ================== 6803 29 100.0 46 ............................. GTTATTGTGTTTTTTAGTTTTATGATGCCTGCTTTTGTATTTAAAC 6878 29 96.6 48 ........................A.... CAGCTTACGGCATATTGCTTTTCACCGATGACTATTCTGTATTTAAAC 6955 29 100.0 43 ............................. TTTTCGTAGTTAGTCAAAACTTCTATGTCTGCATAATTTAAAC 7027 29 100.0 52 ............................. CCACTTTTTCCGTATGTGTATCCGATCACTTCAAAAAGCGCGGAATTTAAAC 7108 29 86.2 0 ............C..C.........CG.. | A,A [7131,7133] ========== ====== ====== ====== ============================= ==================================================== ================== 5 29 96.6 48 AAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : TGCATACCCAAAGGCTCCTCGCACCTGCGAGCCAATAAAAAATGGCGGCTTTTGTGACGGCTCAAATTTCACTCTAAGCTCGGCATACCTCATCTAAACTCCTTATCTTCACATAGTCTAAAACCACGCCCACCATGCTCTTTTTTAGAGCATTTTTTCTATTTATTTTAAGTTTGGGGATAAATTTATTAAGCTCTAGTAGTTTTATCAGCATGCCAAGACTATCTCTTGTCGCCCTTATATCGCTAGAAAAGGTCAAGATCATATTAGTTTCGTTATTCACTTCAACGCTCGATTTTAAAATTGTCTTATTATATATGATTTAAAGGTAAATGTTTATGATTTTTAAATTTTTGTTTAAAAATTATTATTTTTTGTATATTTTGTGCGTACCTTCACCACTTTTGATTTTTAGCTTAAATTTCCATCTTTTTGGCTAAAATTTCAAAAATTTGTGATTTTAAAGATATTTAAAATAAGTTCTTTTACTTATCATTGTT # Right flank : CCCATACCACATTTGAAAAGGTAAATTCAAAATGTTTACTAAAAACCTAGAACACATATTTACAAAAGGTGCTTTAAGCTCTGCATTTGACGAAATTTCTGCAAATTCTTTGGGTTTAGACGAGATCTCATATGCTGATTTTAAAAAGAAATTTGACGAAAACGCAGACCATCTCATACGCTCATTATTAAATGGCACTTACACGCCAGAACCGCTAAGAAAGATCAACATCCCAAAAGAAAATCGCAATGGCGTAAGACCCATAGGCATATCCTCTATAAAAGACAAACTAGTTCAAAAAGTCCTATACTCAGAGCTCAGTCCATACTTCGACGAGACATTTTTATCAAATTCCTACGCCTACCGCCCACACAAATCCACCTACAAAGCCATAAATAGAGCCAGTAGCTTCATAAATGAAAATTACTGCTGGATACTAAAGGCCGATGTAAAAGACTTTTTCGAGTCGGTAAACCACTCCAAGCTACTACAAATTTTGC # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.83, 5:0, 6:0.25, 7:-0.12, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 10123-12051 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYN01000207.1 Campylobacter concisus strain AAUH-49UCil-a 1109100, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 10123 37 100.0 37 ..................................... CTTCAAGAGCCTCCTCTGCTGTTTGGCAACGAACTAA 10197 37 100.0 38 ..................................... GCTCACACTAGCTAGTGCTTGTGGCACCTTGATGTAAG 10272 37 100.0 35 ..................................... CTTTGACTACTACATTGTAGTAGCCCCTATTTGAA 10344 37 100.0 41 ..................................... CTCTGATAGCTTCTTTACTTCTCTCAAACACTCCTCAGCAT 10422 37 100.0 35 ..................................... AGCATTAGAGAAATTGTTTTGTTTCTCGCCTTTAA 10494 37 100.0 36 ..................................... AGTCTTGAACTGCTCTCAAAGCACCTTCTGCTGTGG 10567 37 100.0 39 ..................................... TTCAATGTTTTGGAGACTTTGTCTCCATTCATCTCGAGT 10643 37 100.0 35 ..................................... GAGGTGTCTTGATGTAGGCATGAATGTCCTCTGTT 10715 37 100.0 36 ..................................... ATCATAAGCCTCCTCGGCTGAGGCACACTTTATCAT 10788 37 100.0 39 ..................................... ACTTGGTAAGTATGTGAGTTGTTTGGCGATCTTTTCGCC 10864 37 100.0 42 ..................................... TCTCAGAGCTTCCACTGCTTCTTCAGCAGTTTTTGCTCTAAT 10943 37 100.0 39 ..................................... TTTAGCCATTTGATAGCCCTTCGCAACTACATTATAATA 11019 37 100.0 40 ..................................... CCTTTGTTGTTTCTCTCCCTTAATAACGCAGTTGTACCAA 11096 37 100.0 39 ..................................... AGTATCTTCAACATTGATCTCTAGAAGCTCAGCAACTTC 11172 37 97.3 34 ......................T.............. TTAAACAGATTTACACACCACACACTTTTAAGCA 11243 37 100.0 37 ..................................... CTTGTGGTATATAATTGAGAGATCTTTCGATCTTCTC 11317 37 100.0 45 ..................................... CCGTTCATCTCTAAGATGCTGACTTTCATTTGATTCTCCTTTAAG 11399 37 100.0 42 ..................................... CTTGGTTCTGGGATAGTTTCATGGATTTCATCATCGTAATAA 11478 37 100.0 38 ..................................... TGTTTCCTCTGCGTTAGAGAAACGTTGCTGTTTCTCAC 11553 37 100.0 40 ..................................... TCTTTGGCTACTACATTGTAGTAACCTCTGCCCGCAGGCA 11630 37 100.0 41 ..................................... GACACTCATTGTGTGGAAGGTCGTAGGTACTTTTACATAAG 11708 37 100.0 45 ..................................... CCGTTCATCTCTAAGATGCTGACTTTCATTTGATTCTCCTTTAAG 11790 37 100.0 38 ..................................... TGTTTCCTCTGCGTTAGAGAAACGTTGCTGTTTCTCAC 11865 37 100.0 37 ..................................... AAGCTCGATGGTACTTTCACGTAGTATGTTTTTTCAG 11939 37 100.0 36 ..................................... GCCTTGTTATCCAAAGCGTTTATTTGGGTTTCTATC 12012 37 97.3 0 ....................................T | C,AA [12042,12044] ========== ====== ====== ====== ===================================== ============================================= ================== 26 37 99.8 39 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGATGCAAGAGCTCTTTGTCTAGCTTATGTCATTCTTAAATTTCTATTGGATTTTCGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTGGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATATATTTGCGAACTTTTAGTTATGCTTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTAGGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTTCATACCCATACATTTGCGAACTTTTTTGAGCTTTTCGCGAATTTTGGGTATCTTTAAAGCCGGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTGGGCT # Right flank : TTTGGTAAAGTGTAGGTAGTGGCTTATATTGTTATTTGTAAAAATAAATGAGTGGTGCTTATATGCGTTTATTGGATAAATTTAGATAAGAATAGATTGGCTTAGATTTATGAAAAACTACAATAAAGATAGGTTTTTGTGATTTGCGTAGATAAATAAAAGCTACGAAAACGAGCCATGAATTTTGCTTCATGGCTGCATAGGCCAACTATTTAGAAGTTGGCTTCATGCGAAATGTGCCCTTAGTGGTTTGGACTTTGGTGTAGCCACCAAAGCTTTGGCCAACTTTTTGGTGAGCACGAGCAGATGAGTAAGATCTGCTTGATGATGAAGAAGACTTTGAGTAAGAACGTGAATAGCATTTTGCCATTTTAACCCCTTTGTGTTGAATTATTTTGTTTTGTTGAGAGAATTATAAAGTGACGTATGGACATATTGTGTATAATTCATAAAAAACTTTAGAGAATATAAAGGATAAAGTAATGGACGCTCAGACCAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //