Array 1 269135-268807 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATW01000011.1 Pseudomonas aeruginosa strain NCTC11452, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 269134 28 100.0 32 ............................ AGTAGGTCGCGTTCGGCGGCGAGGCGTTGAGC 269074 28 100.0 32 ............................ AAGCTGGCGCCGATGACGGCTACTGCCGCCAC 269014 28 100.0 32 ............................ ACCGTCATGCTCTGGCGCATCGATGCCGGCGA 268954 28 100.0 32 ............................ TTGTCTTCGGATGCGAAGTGGGCATTCGTCAC 268894 28 100.0 32 ............................ AGTCAAATACAGCCTGTAAGAGAACCCCCATT 268834 28 78.6 0 .C..........A....TG..C.G.... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 96.4 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CAGGGCAACCCGGCGTGCATCAACACGGCAGCGTCGAAGGCGATGGGCGTAGTAGCAAGACCGCACCACGTCGAAGGCTGAACAGACCACTTCCACCGACTCCAGCTCACTCAACTGGTCTATCAGCGCGTACGATCGAGTTCGTCCGACATCAAGAGAGCGGTAGCCTTTTTTAATATCGCTTTCTCCCGCTCCAACCGGTTGATCCGGGCTTCCAGCTCCTGGATCTTTTGCTGCTCAGGCGTCAACGCCTTGCTCTTCGGGGTCACACCCTGGCGCTCCGCCTCGAGCTGCTTCACCCAACGGCGCAAGGCCGAATCCACCACCCCCAGCGAACGGCAGGCGTCGATATGGCTGTAGCCTTGGTCCAACACTAGGGCCGCGGCCTCTCGTTTGAACTCGGCGGAAAACGTACGTCGTTGCTTGCTCATCAGACACCTCTCTCACGGCGAGGATTTTCGCCTAAATCGGTGTCCGGGATCAGTAGACCACTACACACA # Right flank : GCCGGCTGCGTATCCCAGTGATGATGGGGGTTCCAGAGTCCACACACTGGAAGTTCCGCCTCGCCGACTTCATTGATTGCGCCCCACCGTGCCGATGATTTTGCCCCCGGCAGCGGCAAGGAGCGGCTACTCCGCTCGCCCCATCATCAATGAAAGTTAAAGAATCGTGCGGTCTCGTATCTACGACAGCAGTAGTCGAAGTGCACAGGAAGTTGCGCCTTTCATCTCCATTACTTTCGCGCGAGATATATCGCGCATGAACGAATGCAAGGATTCGCACATGAGTGGAAAACCCGCCGCCCGCGCCACCGATCCCACGGCCTGCTCTCTGCCGGGTCACGACACCAGCCCCATCGTTCAAGGCTCTCCCGATGTCATTTTCGATGGCCTGCCCGCCGCACGACAAGGCGACGCCTCGGCATGCGGAAGCCCGATCGCCTCGGCCGTTTCATCGACGGTCTTCATCAACGGCCAGCCCGCCGCCACCCTGGGCAGTGTGG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 196646-196017 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATW01000012.1 Pseudomonas aeruginosa strain NCTC11452, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 196645 28 100.0 32 ............................ GAACTCATCAAGTAACCCAGCCGGGCGCCACT 196585 28 100.0 32 ............................ AGACCGTGACCAGCGCCAAGCGGTCCTTGGTG 196525 28 100.0 32 ............................ CTGGTTTCGGACGTTCCCAACTGCTGGGTCGA 196465 28 100.0 32 ............................ TGCAGGAGGAAGGGCGCTTGCGCGCCGATTCA 196405 28 100.0 32 ............................ AGTCACATGTTCGGGTACCAGCAAGAGCTGTT 196345 28 100.0 32 ............................ TGATGCAGATGCATGAGCGCTTCCAAGAACGC 196285 28 100.0 32 ............................ TCTTGAGCAGGAGCATTGCGGTTGGAAGAAGT 196225 28 100.0 32 ............................ TCCGGCCCCACTCGGTCCGGACTGTGCAGCGC 196165 28 100.0 32 ............................ ATCCGGCCCGCTCACCGACGGCGGCGCGTCCT 196105 28 96.4 32 ............G............... ACGGTCCCTTGCTCGCGCCGACCAAGCGCCCC 196045 28 82.1 0 ......................G.CTTC | C [196020] ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCGCTTCCCGCACAACGCCACGCTGTACCTCGACACCCAGGCGCCACCCGGCCAGTTGTTCGAAAGCGCGAAAACGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGTCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCCTATATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCGCACATCCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGAGACGCGATCCCTTCGAGGCCCATTCGCGCGCGAACGGTGAGGCTCACCGCCCGTCCCGCTCATCACGAAATAGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTTACGCCCTTGAAAATCAAAGACTTACAAAGCCTCGTAAAAAGAGGGTTTCAAACTGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : CACTCGGACTCGCAAATGGACGCTGGAAGGCAAGAGACGATCACCGTGGAACGACTGGAAGACAATACCGTTCACACCCGGCTTTCCCCTGACGAAACGAATAGCCTGTCCGTCTCCGTAACGCCCCTGTCAACTTGCCCCGGTAAACCGGACCTTCGTGAAGCCTGCGGAGAACTCCGGTATGAGTGGGATGGACCTCAAGCGCCGTCGCGTCGTGCAAGGCCTGGGCGCTGGACTGCTGTTGCCGGCGCTGGGCGCGCCGGCGCTGATCGCCTCGCCCAGGGCGCGGCCGAAGCTGACCGATGGCGTGCAATCCGGCGACGTGCAGGGCGACCGCGCGCTGGTCTGGAGCCGCACCGACCGCCCGGCGCGGATGATCGTCGAATGGGACACCCGTAGCGTCTTCAGCGAGCCGCGCCGGCTGGTCTCGCCGGTCACCGACGAGCGCCTCGACTACACCGCGCGCATCGACCTGCGTGGCTTGCCTGCCGACCAGTCGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 410742-411189 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATW01000010.1 Pseudomonas aeruginosa strain NCTC11452, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 410742 28 100.0 32 ............................ CGGGACGAGCCCAGAACCACATTCGGGCACAT 410802 28 100.0 32 ............................ AGGGCGGCGCCCTGGCGGAGTGCTGCTACGCA 410862 28 100.0 32 ............................ TTGTTGGCAGAACGTACCGCCATGATCGCCCG 410922 28 100.0 32 ............................ CTGGAACAAGGCGAGTTGTTCCAGGGAGGATT 410982 28 100.0 32 ............................ TTGGCGAGTTCGCAGCGCTGTTCGTTGTGCTG 411042 28 100.0 32 ............................ TACGGCTTCGCGCCGCCGGTCGGCAAGGGTGA 411102 28 100.0 32 ............................ TCGGGCGACGTGCCCGAATCCGGGCTCGATGT 411162 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.5 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGTGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTCTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGTCCTCGCGAAACGGCCTCCAACTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGGCTCTGGCAGGAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : GTTGCGAGCGATATAGTCCCGTAGGGCGGATAACGCCACGGGCGTTATCCGCCGATGTCACGGAAAGCGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCAGGACTTCGGAATGAACTCTTCTCTCAGGCTCATAGCGTCTCTCGTGGTGTCTCTCCGGCAACTCCGCACACCTGTCAGCCATGTCTCCGGTCCGTACAGACGCTTGCAAAAGGGACTGGCCTGGGAGGGCGAAACGAGAAGCCGAGGCAGGCAAGGAAATCAGCTTGCCCAGCACATTCAGACTCAAGACCACGAGGGCAGAAAACTGCCAGCCTCAGGCCGGCAACAACGGCCGACAGGCTTCGACGAAGCGCCGGCAGGCACCCGCACATTCGCGCTCCAGCGGCTCGTCGCCATCGCAACGCTCCGCGCATGCCAGGGCATAGCGCGCCGCCAGCTCGCAGGCGGCCGGCGCCCATGGGCTGCGGCGCTCCAGCAGCAGGGCAGCGAGGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1449926-1450193 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATW01000001.1 Pseudomonas aeruginosa strain NCTC11452, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1449926 28 100.0 32 ............................ TGCAGCGATGATCCGTTGTTCGCCTTCGAGAA 1449986 28 100.0 32 ............................ TTGAGAGCGGTTTGCTCGGCGGCGGTCGCCTC 1450046 28 100.0 32 ............................ TGCAGAACCTTCGCGGCAACCAACTGAGGTCC 1450106 28 100.0 32 ............................ TGGTTGAGCCAACATGCTCCCGTGCTGTACGC 1450166 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACCGCTTCCCGCACAACGCCACGCTGTACCTTGACACCCAGGCGCCACCCGGCCAGTTGTTCGAAAGTGCGAAAACGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGCCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCGCACATCCCAGGCGCGACGCCCCCGCCTGGCCGGGGGCTTTGAGACGCGATCCCTTCGAGGCCCATTCGCGCGCGAACGGCGAAGCTCACCGCCCGTTCCGCCCATCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGGCGGCTTCTTACGCCCTTGAAAATCAAAGACTTACAAAGCCTCGTAAAAAGAGGGTTTCAAACTGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : ATACACCGTGCGCATGTGACCTGCCCCCCGATTTCAGTACCACGTCAAACTTAGTAGAGTCCGTTTTCCGAGCAGGAGACGGCAGTGAAAAAGCGTTTTACCGAAGAGCAGATTCTCGACTTCCTCAAGCAGGCGGAGGCCGGTGTGCCGGTGAAGGAACTGTGTCGCCGACACGGCTTCAGTGATGCCTCGTTCTACACCTGGCGGGCCAAGTTTGGCGGTATGACCGTGGCGGACGCCAAACGGTTGAAGGATCTTGAACTGGAAAACAGCCGATTGAAGAAGCTGCTCGCCGAGGCCCACCTCGACATCGAGTCGCTGAAAGTGGTCGCCCGGGGAAAAGGGTAAGCCCGACAGCACGGCGGGAGGCGGTGCAGGAGATGCAGGCGCGAACCGGCATCTCCGAGCGTCGTTCCTGTCAGTTGATCGGGCTGTCCCGCTCGGTGTTGCGCTACCAGCCGCGAACCAGTGTGCAAAACATCGAGCTGCAAGCCCAACTG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1451466-1452213 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATW01000001.1 Pseudomonas aeruginosa strain NCTC11452, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1451466 28 100.0 32 ............................ TGGCCCAGTCGGTGAAATCACTTCCAGGACCT 1451526 28 100.0 32 ............................ TCGGTTTCGCGGAAGTCGGCATCGATCCCGTG 1451586 28 100.0 32 ............................ TTTGGCGCGTCGGCCTGGCCCACACGATCGAT 1451646 28 100.0 32 ............................ CAGAGCGCGGCGGCGAAGAGGAAGCGCGCCGG 1451706 28 100.0 32 ............................ TTCCAAGTCAGATGTTGCGGGTTCAAGTCCCG 1451766 28 100.0 32 ............................ AGGAGCAAAACGGTCAGCGAACAGGCAGACCA 1451826 28 100.0 32 ............................ ACTGGGAAGCTGAATCCAGGGCGCTCCAGAAA 1451886 28 100.0 32 ............................ TCGAACACCTCTTTACCGTGCGTGGCCATGGT 1451946 28 100.0 32 ............................ AATACAGAGCAGAATTTCGGTCCACTGCTCAC 1452006 28 100.0 32 ............................ AGAACCGAATAGCCATGAGGCTGGCCAGAGGA 1452066 28 100.0 32 ............................ ATTCCAGGCGGACCCAGACTTCATCCGGTTGC 1452126 28 96.4 32 ...........C................ GAGTGTTACGGCGAGCGCCGCACTTTCACCAG 1452186 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TTCACCAAGGAGTCGGTCGGCATTCTGGTGGAGCACGGTATCAGCGGCTTTCGTGTCACACGGGCGCTGGACGAGATGGCGCGGTTTCGCGGCTACCCGAAAGCGATCCGCACCGACCAGGGGCCCGAGTTCACCGGCAAGGCACTCGATCAATGGGCCTATCAGCGCGACATCAAGCTGAAGCTGATTCAGCCTGGTAAGCCCACGCAGAATGCCTTCATCGAGTCGTTCAACGGTAAGTTCCGGGACGAATGCCTCAATGAGCACTGGTTCTGTTCGCTGGCCGAAGCGAGAATCCGCATCGCGGCCTGGCGGCGGGATTACAACGAACACCGACCGCACAGCGCGATTGGCAATCTCACCCCGGCAGAATTTGCTGCAAGTTGGCGAACTCGCCAGCAGCAGCTGAAGCAGGAAAAATTAATATCAACCCCAGGGCCTACTAACTAGGCAGCGGTACTAAAACTGGGGACAGGTCACATCGGCCACCGCTTCACCAA # Right flank : ATCGCGAGCGATAGCGATATAGCGCCATAGGGCTTCGGCCTGCGGAGGTCTGGCAGGCACGAAGTCATGCTCACCTGTCCCTTGGGGTAATGGTAATGCCCGTCAGTCAAGAAAAAACGGCGTGTCCCCAAGCAAGGGACGCGCCGTTTTTCCGGGGCCTTTTGTGCTGGCCTACAGCCCGTTCTTCGCCTTGAACTCGCGGCGGCGGCGATGCAGGACCGGCTCGGTATAGCCGTTCGGCTGCCGGGTGCCTTCCACCACCAGCTCCAGGGCGGCCTGGAACGCGACGTTGTCGTCGAAGTTCGGCGCCATCGGCCGGTAGGATGGGTCACTGGCGTTCTGCCGGTCGACCACCACGGCCATACGCTTGAGGCTCTCGACCACCTGCTCCTGGCTGATCACGCCGTGACGCAGCCAGTTGGCCAGCAGTTGGCTGGAGATGCGCAGGGTGGCACGGTCTTCCATCAGGCCGACGTCGTTGATGTCCGGCACCTTGGAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2393404-2392030 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATW01000001.1 Pseudomonas aeruginosa strain NCTC11452, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2393403 29 100.0 32 ............................. CATCTTCTCTTCGGCCTTGAAGCGCCGCATGA 2393342 29 100.0 32 ............................. CAGTGCCGCCATCACCTGCTCGGGCACCTTGT 2393281 29 100.0 32 ............................. TAGATCAGTCGATTGGCGAAATCCACTCTGCG 2393220 29 100.0 32 ............................. CCGCAGTTATCCGGATTACCGGCCTGCTGCGG 2393159 29 100.0 32 ............................. CCGGCGCCGCCCGCCAGTAGCGGCCGACGTCC 2393098 29 100.0 32 ............................. GCAGCGGGCGACCTGGGTGAAGACGGCGGCAA 2393037 29 100.0 32 ............................. GCTGGTCACCGCCGACGCTGGAATGGCACGAA 2392976 29 100.0 32 ............................. GCTCCGGCCTGTGGGGGCGTGTCGAATACACC 2392915 29 100.0 32 ............................. TAGGACAGGACTGCGTTGGCGTTGTCGAACTC 2392854 29 100.0 32 ............................. TTCAGGGCGCGGCTGGAGGTGGCGTCACTGCA 2392793 29 100.0 33 ............................. TGGGCGAACGACGGCAGCGTCACCCAGGCGCAC 2392731 29 100.0 32 ............................. TCGGAATACGACTGGTCTTCGCTGCCAGGAAA 2392670 29 100.0 32 ............................. AGTTCAGTTTCTCGCCGAACATCAGTCTCACC 2392609 29 100.0 32 ............................. TCGGAATACGACTGGTCTTCGCTGCCAGGAAA 2392548 29 100.0 32 ............................. GAGGCGTCATGAGCCAGATCAGTAAGACCCAT 2392487 29 100.0 32 ............................. ACGTTCCCCAGTGGATAATCCGAGTCATAGAA 2392426 29 100.0 32 ............................. TAGGTGCGAAGCAGGCGCTGTACCGTGTGATC 2392365 29 100.0 32 ............................. ACCCTGCCGGATAGCTATACCTCAGCAGAGGT 2392304 29 100.0 32 ............................. TTCTCGCCGGCCTGCTCTCCCAGACCGCCCTC 2392243 29 100.0 32 ............................. AAGCCGGTATTCGTTTCCCAGGTCAACCTGGA 2392182 29 100.0 33 ............................. CGGCCGCCACCGACTTGGGCAGGCTTTTCCAGC 2392120 29 100.0 32 ............................. GCGAACCAGGTGCGCTACGGCGACATCGTCTG C [2392111] 2392058 29 89.7 0 .G..........G..A............. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.6 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGGCCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAGCCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGTCACAGGACGCAAGGGTGAGCTTCCTGGCCGTGGTGGTGGAAAACGTCCCGCCGCGCTTGCGTGGACGTCTGGCTATCTGGCTACTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCAGCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGTTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCATGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCCTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACACCCTTGTCGATGGCGGGTTGGGCGGGAACCGGCCAGAGCAGGGAGAGGCCGGGTTGGCGGTCGGCGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2403826-2402576 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATW01000001.1 Pseudomonas aeruginosa strain NCTC11452, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2403825 29 100.0 32 ............................. CACAAGGGCACCATCGGCGCCATTGACCGCGC 2403764 29 100.0 32 ............................. GATCGGAACCCTTTGAACAATGCTCCAGAGAA 2403703 29 100.0 32 ............................. GCAGAAAGCTCTGGCGTTCCGTAGTCAGCCAA 2403642 29 100.0 32 ............................. CTGCATCGCACCACCACCGAAGTCCCTAAGCA 2403581 29 100.0 32 ............................. GTACAGCAGATGAACCAAGACCAGGCGGAAAT 2403520 29 100.0 32 ............................. CGGAGGACTGCGGCATGAAGACTTCTGAACGC 2403459 29 100.0 32 ............................. GCTTCCTTGTTCCTGCTCACTGCTACGCGCCG 2403398 29 100.0 32 ............................. CGGAACAACAGTGCCGCGACGGCGAGATCGTA 2403337 29 100.0 32 ............................. ATCGATAGAGAACAGGTGAACTACATGCGGTA 2403276 29 100.0 32 ............................. GTGGATGACGAAGGCGCGAACGTCACCGAGTT 2403215 29 100.0 32 ............................. TCAGGATCCGCAGGATCAACGTCCAGCAGCGA 2403154 29 100.0 33 ............................. CTCGTTCTCCGCGTCGTGAGGTAGCCAGCAGTC 2403092 29 100.0 32 ............................. AGGGTGCAGGAGCCGCAGCAAGGGCACAATTC 2403031 29 100.0 32 ............................. CAGGGCCACCAGCCGGTCCTGGTGCTGACGGT 2402970 29 100.0 32 ............................. ACCCTGGTGGTGTAGCGGTCCACCAGGGCATG 2402909 29 100.0 32 ............................. GTCACGGTCGCGCAGATCATGGATGACGTGCT 2402848 29 100.0 32 ............................. CGCTACTGGTCCCTTCTGCGCGAGCTGGCCGC 2402787 29 100.0 32 ............................. TAGTTGCGGAAGCCAGGCCAGGACAGGCCGAG 2402726 29 96.6 32 ..............A.............. AACGCGGCGCGCGAACGCCCATCTTCCAGAAG 2402665 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 2402604 28 79.3 0 A..........A..C.....-..A....T | C [2402595] ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.4 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGGTGAGGTGGTGGGTCGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATTCCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGACCCTCATTTCCGGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGACCCACCGCGCGGTATTTTCCACGGTGGGGCGAACCGCGCGGCACTTCGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGTCGGAGACGCGGATCGCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCATGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAACAACTGACGGCGCGGCGTTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTTGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAACAGATTGTGAACGGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCAGGTCCATATCCCTCCTGCGGTCCTTCGCTTGCTAAACGGGGGTGAGCAGGCGTATCCCTTGCAGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //