Array 1 1669741-1672043 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035282.1 Tissierellia sp. JN-28 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1669741 29 100.0 36 ............................. GATTTTGACAATAATAGGGTAAACAACTTTGATGGT 1669806 29 100.0 35 ............................. GCCCGCCTTTGTCCATATAGGGTTTACCGCCCATA 1669870 29 100.0 37 ............................. TTCGCATGTTAATAAAGATATGTTGAAGAGGGGAAGA 1669936 29 100.0 36 ............................. CGGCCAGCCCCCATATAGATTTCGGATCCTTTGCAT 1670001 29 100.0 36 ............................. GCTACCTTCTCCATGCGGGAAGGGTTCGACTTGGAA 1670066 29 100.0 36 ............................. ATAATTATACTGGTGTATGGAGTTTTGCGGCAGATA 1670131 29 100.0 36 ............................. CCGCTCAGCACATCTCCAGCTTGGGCTGTTCCGTAC 1670196 29 100.0 34 ............................. TGTGACGAGGTTACCGGAGAAAAGCAGATAGCGG 1670259 29 100.0 36 ............................. ACATATCCCCATGCCCTGTATCTCCAAGTTCTTCTT 1670324 29 100.0 36 ............................. AGGCTATAATTTGGTGTTAATTTCAATCCTATCACT 1670389 29 100.0 36 ............................. TAGATTTATCTCCAAATGCAGAAAGCTTTAATCCGG 1670454 29 100.0 37 ............................. TTATCTGTTCTATATAATCTTTTGTGATTGTATTTTC 1670520 29 100.0 36 ............................. GATTTTTATTAGAAGAGCCTAATCCGTATATGTCTG 1670585 29 100.0 35 ............................. TCCAAAAACAAATTTTGGCAATGTAGAGGAAACTG 1670649 29 100.0 35 ............................. GACGTTATGGCGGCTACAAGGGCCTACAACAGATG 1670713 29 100.0 35 ............................. GTACAAGCCTACAAAGCGGGGGTAAGGGGCCGCTT 1670777 29 100.0 37 ............................. TGTAAGCTACCAAGCCGCTTAACCCGTTAGTTTCCAA 1670843 29 100.0 36 ............................. CTTGGAAGTTTATAAAAGAAAATCCATGTCAGGGCG 1670908 29 100.0 37 ............................. ATAGCTATGTTGCTATCGGAATGTCCTATTCTTTCGT 1670974 29 100.0 35 ............................. CTCCTACGCAAATAATTTCTTTTGCATAGTCCCCC 1671038 29 100.0 36 ............................. CCTACAGAGATAAGGATGGAAGTATTCAGGCTATAG 1671103 29 100.0 36 ............................. ACAGTCCTACCACAAGTTGTTCTTGTTTGCATATTC 1671168 29 100.0 36 ............................. AACCATACAACCGCCGCATATGTTGCCAACATAATT 1671233 29 100.0 36 ............................. TGTAAACTTGTGTCACTCCTATTCTTTCTGCTAATT 1671298 29 100.0 35 ............................. TACCTCGGAGAGGACGATATGACAACAGATAAATT 1671362 29 100.0 37 ............................. TTTTATGAGCATTTTTAATTTGAGAGTACGTTTTTCG 1671428 29 100.0 38 ............................. GAAGGAAGGAGGGCGATATAATGGCATGGCAAGAACCA 1671495 29 100.0 35 ............................. TTGTAATAACCTTTCATCATTCTACCTCCCCTATC 1671559 29 100.0 36 ............................. ATGCTGTGGTATATTCATTAAGCATATTCTTTTCTG 1671624 29 100.0 38 ............................. AAAGGACAGCAGTACATGGAAGTTGACGAAGAAACCGG 1671691 29 100.0 35 ............................. CCCCCTAACCTTGTACGTAATATCTGCATATTCTG 1671755 29 100.0 36 ............................. TAAACTAAAGGTTCCGGTATAAAATCGCCTTTTTTA 1671820 29 100.0 35 ............................. TTTCCGCTATCTTTTCATCCACCGCCGCCTCTGCT 1671884 29 100.0 36 ............................. GATGCTCCGTTCTTCAATGAAAGCATAGCCATAGTA 1671949 29 100.0 37 ............................. CCACTATCAAAAAGCTTTCTTGCAACCTTTTTATTTA 1672015 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ====================================== ================== 36 29 99.9 36 ATTTATAATACCTAATGAGGAATTGAAAC # Left flank : CGGAACTCCCCCCCACGGTGGATTGGCTTATGGCTTTGACAGATTGATGATGCTTCTTACGGAAAGTGATAATATAAAGGATGTTATTGCTTTTCCAAAAACTCAGAGTGCTACTTGCTTATTAACGGATGCACCCACGGAAGTCAGCGAAAAACAATTGGAGGAAGTTCATATTAAAGTCAATTTAAAATAAGAGGAATAATTTGAGGATGCTGAAAATACTACCGGAACACAATAACCGATTAGTGGTTGTTGTGTTCCGGTAGTTAATTATAGTTTTTTTAAGAATTTCAACCAAGGTACATTGTCTACTCAATAACTACAATAAAAATAAATTGTTGTCGACCCCTAATAATGTAAAAAGTCCCGGGGATCGACGGCGATTTATTTTTTTGCATAATTAAGTAATACCAATAAATATATAGAGATTATTAAGAAATTATATAAATTTTTTGGTTTGACAAAAAATAAAGAATATAATAATATCAATGTATAAATGG # Right flank : TGGATTTGAAATTAATTTCTGTTAAGTTACTAACATGGACATCACTATCTGTCTTCGACACTATTATTATAACAAAAAAGTATTGAAAATACTGATGTACAGTAGTTTTCAATGCTTTTTTTCGGTATCCTCGAATTATCTCTCTTATTTATGCTTAAAAAGATTTTTGCCATGGTATATAATAAAGGAAATATAAAATTGAGTTCAAGGAGAGATTTAGATGAACCAAATTGGTTTAGTATTAAAAACGGATGGAAATAATGCTGAAGTTGAAGTCAAAAGGTCTACTGCTTGCGGGCATAGTTGTGAGAGCTGTTCGGCTATGTGCAAAGCTCCGAGCATTATTGTAAATGTTCCGAATTCCCTTGGAAGCAAGGTGGGGGATTATGTTGAGATAGACATGAAAGAGAACAAAATTTTAAAATATGCATTTATTATGTATGTAATACCTTTTTCAATATTCCTCTCAGGTATTTTTTTAGGAATAAAAGTTTTTAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTATAATACCTAATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 2012895-2011882 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035282.1 Tissierellia sp. JN-28 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 2012894 29 96.6 36 T............................ TATGATGAAGAGAAGAAAGAGGCCGAGGACGAAATT 2012829 29 100.0 36 ............................. TCGCTTATATAATTGCGACAGATGCAGCTGATTACA 2012764 29 100.0 41 ............................. AAATCACTGCATACTTTTTTTGTTATCGCTTCCGGAGACAT 2012694 29 100.0 37 ............................. TCTGATCTGCAAGCTTGGGAATATGGATTTCAGTTTT 2012628 29 100.0 36 ............................. CGGAATGTCAATGGCAGGAGCTTGGAACATCAATAA 2012563 29 100.0 37 ............................. ACGTCAGAATACCTCTGAAACGCTCTAAAACGCTCTC 2012497 29 100.0 35 ............................. TCGCTTGAAGAAACGAACTTCTCTGGATGTTCATA 2012433 29 100.0 39 ............................. AAGCTATTCTATGCGGAGCGGATAACGCTCTTGTGAAAG 2012365 29 100.0 36 ............................. ATTCGCTATCCCTAATATGCTGTTCAAAAGCCTCAA 2012300 29 100.0 36 ............................. AAATTTCCAAAGTAGAAAGGATATTTTATATCTGTT 2012235 29 100.0 36 ............................. TTTCATACTTTCACCTCTTTTCCAACTTTTCTAATG 2012170 29 100.0 36 ............................. AACTTCATTCTATCCCTCCTTCTCAATAAAAAAAGC 2012105 29 100.0 37 ............................. CAGAAATGTACGATGAATTGAAAGAATACGGGACAAC 2012039 29 100.0 36 ............................. TAGCTGGCCCCTACAAAAACCAGCGGTAAATGTGAC 2011974 29 100.0 35 ............................. AGGGCTATCCTTAGAAGCACGACCGACACGACCAA 2011910 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================= ================== 16 29 99.8 37 ATTTATAATACCTAATGAGGAATTGAAAC # Left flank : TGGAATTGACCCCTCTGTTAATCAATCGGGTGAATTCACCGGAACCCGTAACAAAATGTCTAAAAGGGGCTCTAGATTGCTTCGTAGGGTCATCTTTACAACTGCTTTAGCCAATATTCGAAGTAAGAGAAATGGTGACAAAACTAATCCAGTGCTCTATGAGTTCTACCAAAAAAAGTGTACAAACAAGCCCAAAAAGGTTGCATTAGGTGCTGTAATGAGAAAATTAGTAAATATTATATTCGCCGTCATGAGAGACAAAAAGCCTTTTGAGCTAAGAACCCCAGAAGAGCATGAGGAACTACTTCTTACTAGGTCTTCAGTAGCCTAATGATCTGTATTTAATGTTTAGTTTTCAAAGAACAATTTTAAATAACAGCTTCGTTTTTTAAACCAATAATCATTGGTTTATTAGGTGTGCATTTTTTTATTATTAATTTTTCAAAAAATATTTAATATTATTTTGCTAAAATCTATTGACTTTAATTAGCTGGTCTTTT # Right flank : CAATGTGATAATCCTCATCAACTGTTTCAATCAGAATGGTCCTATGTCAAGATTTAGTACAAATTAAAATGAGAAAAATATCCTCATATTAACCAGCTAAAAGTAAGCTGTCATTCTGTACTTTAGCATACAGCTTCTCGAAATCATCGGGTGACATATAGTTGCAATGACTGTGAATTCGTTTTGTATTGTAGAAAGCTTCAATGTATTCAAATACAAGCTTGTATGCCTGTTGATAATTGCGAATTTTAAATCGATTCAGCCACTCACGTTTGATTATTGCATGAAACGATTCAATACAGGCGTTATCCCATGGGAAAGCCTTTTTTGAATAGCTTCTCTGCATTTTAGCAGTAGCTTTTATATATTCATTGGAAACATACTGGCTTCCGCGGTCACTATGTAAAATAAGTGGTAGGTCTGTATTTCTCCTCGCTTTAGCTTTGTTTATTGTATTTATTACGCAGGAAACTTCCATCGTTTTTGAGAGCATCCATGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTATAATACCTAATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 3 2017342-2014767 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035282.1 Tissierellia sp. JN-28 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2017341 29 100.0 36 ............................. CGATTTCTTCAAAACCTTCAATCGCTACATTCTCGA 2017276 29 100.0 37 ............................. TCGTTTTTTTCGGTTTTGCCTTTGCTTTCTTCTGCCC 2017210 29 100.0 36 ............................. CCCCTCTGTCCTTTAGACTGGTCCCGGAAACAAGTT 2017145 29 100.0 36 ............................. TCCAGCCCAGCGACGCAAACCGGCATTGGCACCGTT 2017080 29 100.0 35 ............................. GCGTTTCAACTGGCTCGGGTACTAAAACTATAGTT 2017016 29 100.0 36 ............................. TTCCTTTTAGCAATGGATTGCAATCGGATATAGAAG 2016951 29 100.0 38 ............................. TATGTTTAAATACTCACGAAGTATTCGATTGTGCAAAA 2016884 29 100.0 37 ............................. CTGTTTTACTAAACCCCTGACAAGGACTCCCACCAAG 2016818 29 100.0 37 ............................. GCTTTCTCCGCCTTCGGGTCCGCTATCATTTCATATG 2016752 29 100.0 36 ............................. TATGGATTTATAGCGTTTTCAAACACTACATGTATT 2016687 29 100.0 37 ............................. CTGTTACCTCCCAGCCTTTTTTATATTTGCCGGTTGG 2016621 29 100.0 36 ............................. TGTAATTCAAGGAGAATCTAACTTGCATTCTCCTTT 2016556 29 100.0 36 ............................. TTGGGTGAAGGAGGTGAATATGGAACCGCCCAGGCA 2016491 29 100.0 35 ............................. CGGGACAATTTTCGGACGTATTGAGGAATACAGCA 2016427 29 100.0 37 ............................. TATCACTCCTTAGGCTCCTTGTTCCTTTGTATTTACA 2016361 29 100.0 35 ............................. ATAGCCATCTGTATTGAGAAGTCCTCAATCGCCAG 2016297 29 100.0 34 ............................. TTGTGATTGCATCTCTGAAAGCCAAGCCAAAAAA 2016234 29 100.0 37 ............................. CTCCCATCCGATATATAAAATATATGCGGATGATATA 2016168 29 100.0 35 ............................. GTAGGCCAAGACAAGGCATATGCCGTCGTGCCCAT 2016104 29 100.0 37 ............................. TATACAAGCTCTTTCATTGGCTTGTATACTTCCACTT 2016038 29 100.0 35 ............................. TTGTTTAAATATAAAGGTTCTTTCTGCTGGATAAC 2015974 29 100.0 36 ............................. TTTGTGTACCAGTTCATCAGGGGGTTGTCTCCCCAT 2015909 29 100.0 37 ............................. ATGGGTTCTTTAGATAGCAGCTTTAATAATTTTATAA 2015843 29 100.0 36 ............................. CCTGTCAATTCATATTTCTTTTTCATTTTTCTTCTC 2015778 29 100.0 37 ............................. TTACATCTTTAGATATAGAATTTAAAAATGTAATAAA 2015712 29 100.0 37 ............................. AAAAAAGGAGTGATAAAGCATGGCAGAAAATGATGTA 2015646 29 100.0 36 ............................. AATAATAACACTCTGGAAGTTGCTTATAGGGAATTT 2015581 29 100.0 35 ............................. AGCATGGATGAAATAAGTTTGCTTAATATTCAGGA 2015517 29 100.0 36 ............................. TGCAACCGGAGATAGCAAATTTAAATATGTAGCATA 2015452 29 100.0 36 ............................. TTCGGGACAACAGAACCAACTGATGTAAGAGCCGGG 2015387 29 100.0 37 ............................. TTTTCCATCTCTTAATTAGTTCTTTCTTGGTAAGAAG 2015321 29 100.0 36 ............................. CCGTCGGCCCATGCACTGGCATGATGTATCATCATT 2015256 29 100.0 37 ............................. TCGGTATCAAAGCCTGCCTCTCTCAATGCTCTTGCTA 2015190 29 100.0 37 ............................. CGTTCAACGGTCACGCTCTCACCGGTAAAGAGTTTCT 2015124 29 100.0 37 ............................. AGTAAAGGCGGGTATACTCCAATTCCGAAAGGAGAAC 2015058 29 100.0 37 ............................. TCAGCCATATCAGTCATTGCCATATCTGCAATTTTAG 2014992 29 100.0 38 ............................. TCACTTTCTATTATCTCATTTGCTAAAAACAATTTCTT 2014925 29 100.0 36 ............................. TCAGCCATATCAGTCATTGCCATATCTGCAATTTTA 2014860 29 100.0 36 ............................. TCAGCCATATCAGTCATTGCCATATCTGCAATTTTA 2014795 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 40 29 100.0 36 ATTTATAATACCTAATGAGGAATTGAAAC # Left flank : ATAGAAAAAATGAAAATAGGAGTGTCTTATGCTCGAAATCCATTTTTGGTAAAATATATGGAGAATATGAGATATATTGACCAGTTAGGAAGAGGAATTCCTATGATCATTAAGAATATGAAAGAATCGGGAGCCAAAGAACCATTACTGATGGAGCAAGGAGAAGAATTTATTCTTACTATATTTAAAATTAAAGTATAGATGGTTATAGAATGTAAAAATCTTCTTAATAAATAATAAGTTCATATCTTAATTTACATAGGTATGCAATCGAAGACGGAAAATTTTATACCAGAAGAAAATTTTTGTATTTAATATAAAATTATAAAGTAAATTGTTGTCGACCCCTAATAAGGTAAAAAGTTCAGGGGATCGACAACAATTTATTTTTTTGTATAATTAAGTAATACCAATAAATACAGGGAAATTATTAAAAAAATTATACAAATTTTTTAGTTTGACAAAGAATAAAGAATATAATAATATCAATGTATAGATGG # Right flank : CTGTATGGGTTTTCTTTCATTTACTCTCCTCCTTGTACAATATAGTTATAATCAAATTACAGTTTTCCACTGTAATAATTATCAATTTCTTAAATAATAATATAGTCTTCTTTTCTAATCATTAAATACATTTCTTTGGCTTCTCACCCTAGCCATAAAGCCAGTTTAATTTGGCCTGAACCATGAACAATATTGTATAATTAATTTATGGATTTGGAGGTTGATGCAATTCCTCCTAGGACGCCTTTATGCGACTACCTGTAAAAAAGAGTATCTATCCATTCTCATAAGATTACATTATTTGGCTGGTTGAGGCCAGTTAACACTGGTTCCTCGTGTCACATGCAAGGTTGTGTACTTATTTGAGAAGGAATGGATTTCTAAATCCAAATACTTTATTTAGGAGGTTTCTTATGGATTATCCACCTGTAGCTGGAATTGATGTTGGTAAAAATTTTAGTGAGATGTGTATTTTGTCCCCTAATAATGAGATTTATCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTATAATACCTAATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 4 2033683-2030653 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035282.1 Tissierellia sp. JN-28 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2033682 29 100.0 36 ............................. AATTTTTTGTAAATTTCATTTTTCTTTTTCTGTCCA 2033617 29 100.0 37 ............................. TTTCTATGAAAGAAGGCATTTCAAACATTCTTCCTAC 2033551 29 100.0 36 ............................. ACTAGCCGATAGGCTGGTGTTCTTAGGAATCCACTA 2033486 29 100.0 36 ............................. TTTGCCATAATCTACACTTCCCTTTGTGTCCGATTC 2033421 29 100.0 35 ............................. TGTTTTCTATTCACGCAACCAAATACAAGGAAATG 2033357 29 100.0 36 ............................. TCATTTTCTTAATCCGTTTCCTGCACTGAGCGTCTT 2033292 29 100.0 36 ............................. TAGTATTGTCAACGTATAAGCCCTTTAATCCGCTTA 2033227 29 100.0 36 ............................. TAGCACATAAGCTTACGGGGCAAAAAGGAACAGTGT 2033162 29 100.0 38 ............................. CTTTCTTTTCAAATTCTTCTATACTTCCTTCAAAACAA 2033095 29 100.0 37 ............................. ATTAATTCAAAGCGGCCCCTTACCCCCGCTTTGTAGG 2033029 29 100.0 36 ............................. TAGGCCCTAAAACGGCAGATATGCAGAACGAAGATT 2032964 29 100.0 35 ............................. TCATTTTGAAATTTTGTAGTCTATCTTGACATGTC 2032900 29 100.0 37 ............................. AACGCAGGAATGGCCGCTAAGATCACAACAGTTGAAG 2032834 29 100.0 36 ............................. ATCATGGATATCAAATTTTAAGGTTGACAGATAGGC 2032769 29 100.0 36 ............................. CTTCATTTGGATTCATTATTCCTCTGTCAACGAATT 2032704 29 100.0 36 ............................. ATGAACTGCAACGGATGAACGCTATTCAGAATTTTA 2032639 29 100.0 35 ............................. TTTTCTATAGCTGTATTGAGGCAATCCTTGCACGT 2032575 29 100.0 36 ............................. ATATTTTCCATGTTATCCATTTTATCACCTTTCCTT 2032510 29 100.0 36 ............................. ATAAGTAATTCTTGTATTTTAGCTTGACGTTCAAGA 2032445 29 100.0 36 ............................. TAAAAGGAGTGATAAGAAGTGAAAGAAGCTCAAAAA 2032380 29 100.0 36 ............................. TCATGATTCCAAGGAAGAACGGTAAGGCATTATCTT 2032315 29 100.0 36 ............................. TCTAAAGTATCAGCTAACTCTCTTAAATCTTCTGAA 2032250 29 100.0 36 ............................. GACGAAAATGCTGAAAAACAAAAATGGGCTAGAGTG 2032185 29 100.0 37 ............................. CACAAATTATAGGGGCATCTGCCTTATTCTCATACAA 2032119 29 100.0 36 ............................. TTGCTGGAGGAAAACAAAGAATGAGGAAGCAAAGGA 2032054 29 100.0 36 ............................. GCCGGATGAAACCGGAACTTGTTTCAGATAATGTGT 2031989 29 100.0 38 ............................. AGAATATTGGAACCTATTCTCTGAACATCTTCTTTCTT 2031922 29 100.0 39 ............................. TCTATTTGTTCTTTCAATAACTCTATTTCTTTATTCAAA 2031854 29 100.0 36 ............................. TAAAAAGATTAAGAAGATGGACAGGCAAGAGATGGA 2031789 29 100.0 36 ............................. AAATTTCCCTCTACGCTTTTTTACAAGGTTGCGACC 2031724 29 100.0 37 ............................. CAGGAAGGCCGAACAAAGAGGAAATAGAAAAATTCTA 2031658 29 100.0 37 ............................. TTTGCTTTTGATTTGTCCTCTACTTCTCCGCTTTCCG 2031592 29 100.0 37 ............................. AATACACCACGTGTTACGGTTCATGAACTTTTATAAA 2031526 29 100.0 37 ............................. CAATGTTTTTTGCGCCCTTGAGGGGAACAGTGTAGCA 2031460 29 100.0 36 ............................. ATGTTTTGTTTTTTCCCATAGCATCCGACGCTACAA 2031395 29 100.0 35 ............................. ATTAAATTCATTTTAATTCCTCCCTTTATTTAACA 2031331 29 100.0 36 ............................. TATCCTTTTGTGCAAAGTTCCGTGGCGCATTGTCTG 2031266 29 100.0 38 ............................. TTTAGAGAGAAAGGGAGGTAAAGTATAAATGATGTATA 2031199 29 100.0 36 ............................. ACGGCTCTATAGCAGTTTTTTTCTGTCCAAAACGAC 2031134 29 100.0 37 ............................. ATAAAAATGGAGCTAAGGCAAAGAGAATTAGAATCCG 2031068 29 100.0 35 ............................. ACGACGAGAAAATAAAATTAATAAGAAAAATGCCC 2031004 29 100.0 35 ............................. CTTGTCCTTTTAGAATTTTTCCTTGGTTTCCTGTT 2030940 29 100.0 35 ............................. TAATTAAGATAGCCATTATTAAAAGGAGGTTTAAA 2030876 29 100.0 36 ............................. CAGCTATATAAAACTATTACTTAGCTTTTTAGAAGC 2030811 29 100.0 36 ............................. TTGTCACGGGAGCGGATATGTTTTTATCGACGGGGA 2030746 29 100.0 36 ............................. TTCGGGAGAGCTCTATGGCCGTTTAAAATACCTGCG 2030681 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 47 29 100.0 36 ATTTATAATACCTAATGAGGAATTGAAAC # Left flank : CAAATTGCAGAAATTTATAACCGAAGATGAACAATATCTACCATTTATAGCTAAATGGTAAGAGATGTGAGATTATGTATATTATTTTAGTATACGATTTTGGAGAAAACAGAGTAGCTAAGGCGTTGAAGACATGCAGAAAATATTTAACTTGGGTTCAAAATTCGGTATTCGAGGGAGAAATTACTGAAGGTGATTTAAAAAAACTAAAAATTGAACTTGAGAACAAAATGAATAAGAATGAGGATTCATTAATTATATATACCTTAAGTAATGACAAATATTCCAATAAGGAAATAATCGGCTGTGAAAAAAATAAACCTACGATATTTTTTTAATGTCGACCTATAATAAGGTAAAAACATCGGGGGATCGACATTTGAAAATTTATAATAAAAAGGCTGATAAATACAGATTAATAGCAAATAACAAATAATTTTATTTAACAAATATTTATATATTGCAGTAATATGAATGGCTAACTTTAGCTAAAAATATGG # Right flank : TCTGTACACTTGCGGCCACACTAATCACCTCCTGAAAATTAAGCATAATAAAAGCACTTACTAAATAAAAATAGTGAGTGCTTATTTCTTTCTAAATGTCTATCCCATGCTTTTCTTTTAAAAATTGAATGAATTCTTTATGATATTTTTCTTTTTCTCCCTCCTTTAAAGGTTTGTAGCCTATAGTTGTTCCTCCTGGATTTTGTCCTAATCTTGCTTTAAATTTATCTTCATCTGAAAGTTTTTTATAAGCTTCTCCTTTCTCTTGCTCTGGCAATTTCATAAACTCTTCAAAGGTTAATTTTTTATTATTCATGATATTCCTCCATCATAATATAATATTTACTATTATTTTCAACAATGTCTGATATTCTAAATATTGAACCTCTTTGATATAAAACTTCTTGCTCTTCCGGGTTATATTTAGAAATATCCTTCCCTTGCTTAGAGTTTATTATAAAATATTGTACTTGTCCATCGGGGTTATAAATATTTATAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTATAATACCTAATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 5 2049210-2045606 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035282.1 Tissierellia sp. JN-28 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2049209 30 100.0 36 .............................. GATGGATAAAACTACTCAAAGAATATACTCATTTTT 2049143 30 100.0 36 .............................. ACCCTAAAATTTTACAATTAAAAGCGAGGTGGTATA 2049077 30 100.0 36 .............................. CAGCTTGAAAGGAGTGTCAATATACAATGCTAAATT 2049011 30 100.0 36 .............................. ATCCCCATTACTGTTACATTGTATTTTTCTTCTATT 2048945 30 100.0 36 .............................. TTTGTCAATCGTGATGTAATTTTTTTATGTATATTA 2048879 30 100.0 36 .............................. ATTCTCGTACTCCGTGGTTTCTTTTGGAGTATATGC 2048813 30 100.0 37 .............................. AGCAATTTTGCCCTTCCGACTGCCCCGTTTCTGTTTT 2048746 30 100.0 36 .............................. AGAGCAAATACCTCTTTCTACTGCCAACGTAATTGA 2048680 30 100.0 36 .............................. TATGATGGACAGGCTATTGTAAAGGGGGTGAGATAA 2048614 30 100.0 36 .............................. TATTTACGACCTGGTTATCACAGATAGCAAATTCTT 2048548 30 100.0 36 .............................. ATACTTTTTTTAGCGGAAAGCGTGGAGAAGGTATAC 2048482 30 100.0 36 .............................. TTTGCAAGCTCTATTTTATCAAGCCTTTCCGAATGA 2048416 30 100.0 35 .............................. TTCAGGGAGGTAATGTTAGTTGTAGCAAGAAAAAA 2048351 30 100.0 36 .............................. ATCTATGAATACATCCCAATCAATCTTAGTTACATC 2048285 30 100.0 36 .............................. TTGCTGAAAAAGAAAATGGAGAGAGAAATAGAGGAA 2048219 30 100.0 36 .............................. TAAAAGCTATCGAGCATTCCCCTTAAACCGTTGTTG 2048153 30 100.0 36 .............................. CCTACTTTTATAGGCCAAGGGGGAATAATCCCCCTC 2048087 30 100.0 36 .............................. CCATAACAATATTTCAGCTGTGTGATGATATTATCT 2048021 30 100.0 37 .............................. AAAGGAAATTGGTATTGGTATATCTTTCCTGATGGGC 2047954 30 100.0 36 .............................. GAAAAATATAAAGAAATAAAAGAAACAAGGTTAAAA 2047888 30 100.0 35 .............................. GAATGTAAACAAGCATCTTGTAAATATATTTTATT 2047823 30 100.0 37 .............................. TCTATAATCTGTATTTCTTCCTCTACAACATAAACAC 2047756 30 100.0 36 .............................. TAAGAATGCCAAGACGTTTATCTGTGCTTTAATCCT 2047690 30 100.0 36 .............................. TTGCTGCAATAAATTATTTACTCCTCTGCTGTATAC 2047624 30 100.0 36 .............................. TTTGTATAAAAGGGGAATAAGAGAATATTCATAAGT 2047558 30 100.0 37 .............................. TACATACGCATTACCATAGTGATTCCTGTTTTGCTCA 2047491 30 100.0 36 .............................. GTATCCTGGACAGGGATGCTGGAAAATTACAAAGGT 2047425 30 100.0 36 .............................. GGAAATGGGAGATAATGACGCAAAGGTGATAGACTT 2047359 30 100.0 37 .............................. GGACGGGAAGGATACGATTATATAAGGAATTATCCTG 2047292 30 100.0 36 .............................. TGAATTGGCGGCAGAAGTAGCAGGGCTTGCAAGGAA 2047226 30 100.0 36 .............................. AATAATAATGAAAACAAGTGAATTGTAAAACATATG 2047160 30 100.0 35 .............................. TTCTTTTTTAAAACTGCTATGACAGTTTCTACATC 2047095 30 100.0 37 .............................. ATGCAAATTATCAAGTTTGTATGATGAATGGTGACCA 2047028 30 100.0 36 .............................. GATCTCTATGCGAATATAGAGATTTTGGATAAAAAG 2046962 30 100.0 36 .............................. TGCTTACGAAAGGATATCCGGAATTTAACCGGATAG 2046896 30 100.0 37 .............................. AAAGTTATATCAGGATTGTTTATATTTGTTTCATTCA 2046829 30 100.0 37 .............................. TAAACCAAAGCCGCCTATCGATTTGATAAACGGCTTC 2046762 30 100.0 36 .............................. GTATCTCTATCAACCTTGTAAAGCCTATCTACACTC 2046696 30 100.0 36 .............................. ACGGTGAAGATGTAGAAGTAGATATAAACTCCGGCG 2046630 30 100.0 36 .............................. TGAAAGCATTGCAAATACTAATATATACGGCATGGC 2046564 30 100.0 37 .............................. CTTGTTTGCACTTGCAAAGATACACAAGATTTATTGT 2046497 30 100.0 36 .............................. GAATTTTTGCAAGAAATGTATGAGCAACGTGGTACA 2046431 30 100.0 36 .............................. TACAATAGCAGAGCAATTCTCTATTCAAGCCTTTCA 2046365 30 100.0 36 .............................. TGATGACTACAATACTTCCCAATTGCAAAAGCAAAT 2046299 30 100.0 36 .............................. GCAGGAAAGAAGAGAAAAAGAGAATGCAGAGGCAGC 2046233 30 100.0 36 .............................. TTCTTTATTACAAATTCTATTAGATGATTTATGAAT 2046167 30 100.0 37 .............................. TTATCTAACCGCTTGCCTCTAAACTTAATTTCTCTCA 2046100 30 100.0 35 .............................. ATTCAACCGCCTGGTAGTATTTCAATTCTGGCTTA 2046035 30 100.0 36 .............................. TAGCAAATCTAACCTTAATGGCGAAGGTAGGAATTT 2045969 30 100.0 35 .............................. TTAGGAATGTCGGAATATATGACAAGTAATACTCG 2045904 30 100.0 37 .............................. GCAAAGAACGCCGGTATTCCTGCAAAGAAGGATTTTA 2045837 30 100.0 37 .............................. TATACAAAAATATGTTCAAAGGTGGATAACAAACGAT 2045770 30 100.0 36 .............................. ACCTAAATGAACAGGATTTAATAGATAGCTGGAGCG 2045704 30 100.0 37 .............................. ATATTAAACAATTATAAACTTAATATAATTAATGCAG 2045637 30 86.7 0 ...................T.T...CT... | TT [2045614] ========== ====== ====== ====== ============================== ===================================== ================== 55 30 99.8 36 GTTTTAATAGAACTACAGTAGAATGTAAAT # Left flank : AAAAAGAATATGAAGCCTTCAAAATGTGGTGGTGATAAATTTGTATGTAATACTTGTATATGATATAGTTATGGATAAAAAAGGTGCTAAAGTTTCAAAAAATATATTTAAAATATGTAAAAAATATCTTACTCACATCCAAAAATCTGTATTTGAAGGAAACTTAACTGAATTAAATTGTATGAAATTAAGGATGGAGTTAAATGAATATATTAGAAATGATAAAGATTCAGTACTCTTGTTTAAAAGCAGAGATGAGAAATGGTTGCAAAAAGAATTTTTAGGAATTGTTGATGATAAAACGTCTAATTTTTTCTAAGTGCTTGTCGATGTGTAGTAGCGCAAAAAACATAGAGTATTGACAAACCTGTAAGTTTCAATATATAAGTTAGTATATTTTTTTATTTTGATGCTGTTATATATATTAATTTTATAAATATTATATTATCGACAAAATATAGAGCACAAATTGGGTAATATCAATAACTAATAACAAACGG # Right flank : CTAAAAATAGGTCAGCTGGCTCATTGAAAATTAGGTCACTTTCTTAAGAAAATATGGTATCCTTTCAGTATAAACTGGGAGGAGGAAGAGAAGGAAGTGATAAAATTGAATCAAAAACAAAAAATCATACTTAAACATATTGACGGTATGAGCAATCGAAGCATTGCCAGTGAGCTTCACATGAGCAAGGATACTGTAAATAAATATGTAAATGAGTATGAAAATCAAAAGCAAGAACTTTTAGCAAAAAATCCTGAAACAGATACAAAAGAATTAATTCAAGCAATTGTTGAAAAACCAAAATACAATTCTGAAAACAGAGGGCCAAACAAGGTAACATCTGAGATGATTGAAGTAATTGAAGAATGCTTAAAGGTTAATGAATGGAAGCGTGCTAACGGTATGTCAAAGCAGCAAATGAGAAAAATTGATATTCATGAATACTTGTTAAAGAAAAATTTTAATATTAGTTATTCATCAGTTAAAAGATTAGTTAAAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATAGAACTACAGTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 6 2099335-2099041 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035282.1 Tissierellia sp. JN-28 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2099334 30 100.0 36 .............................. TAAAGGCTTGACAATGTAGAATAAGGTATCCCCGTT 2099268 30 100.0 36 .............................. TTGGCAAATTCTTATTATCCATTTTATTCCGCCACC 2099202 30 100.0 35 .............................. GGCTCTATAAGTTCAAAGTATATAAGCCTATTCAT 2099137 30 100.0 36 .............................. CAGTAATACCCGTTTTCATATGCCCATTCTGCCATC 2099071 30 93.3 0 ........................C...T. | A [2099046] ========== ====== ====== ====== ============================== ==================================== ================== 5 30 98.7 36 GTTGAACCTTAACATAGGATGTATTGAAAT # Left flank : ATGATAAATTACAAATAAATATTATATTTATGTTAGCTATAAAAGAACCGAAGGAACAATTAAAAATGTTGCAAAAATTAACAGAAGTTTTCCAAGATGATAATGCGCTAGAGAAAATAAAAAACGCCAAAAATGAATTGGAAGTATTAGAAATAATGAAATCCTTTTTAGACAATTAACACAAGGGGACGGTTCTTCTGTGCTGCTTTTATCTTTAAAACCATGTTAAAACCCATACATGTAGGCAGAAGATGGGCTATTTATCTACAGAATATAATCAACTTGACTATAGAATTCAAAATATCAAATTATTGTTCTATGGTTTTTCCCAACCTAATTTTAATTTTGTATAGACTAAGTTATTGAAAAATACATATTTTATAGGTATAATATATGTATAAATAAATTTATGAAAAACGGTTGGGAAAATAAATATAAAATCAAGAAAGTAACAGGTATTAAGAGGTTTTATGTAAATGATGAATGTGTAATTTAGTGTA # Right flank : AAAACTTGTAAGATGTAATTAATAAAAAAAAAGGGACTGATTTAAATGGATAATAATGAAAAGATTTAATAAAGTAAATTCTAAGACTGATAGCTTAGAAAGCGAATTATTGTCTAGTAAAAGGCAAGGAACACTATATAAAATAACTTTAAAAAACAATTATCGATTAAATATTATATTTTATTATTTTATATTTTTTAACTAATTGTTAGCTTAAGAATGAAATTACACAAAATTATTTATACAAACTAAATCCCTAACATCAGCCTTTCATATAAGAATTTCGGTAAATCATTTTCTGCGATTTTTCGAACGGTTTTGTTTATATCGTATTCTTGACGTCTATAACAAACAGAATATTTTTCTGTATCATATATTACATAGCAACTCCTTGGATCTTCATCTCTAGGCTGCCCTACCGAGCCTATATTAAAAATATATTTTAAATGTTCATCTAACAATATTTCTTTATCATAATCAATTGTTGTAAGCTCCTTTAT # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 7 2468217-2465581 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035282.1 Tissierellia sp. JN-28 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 2468216 29 100.0 36 ............................. AGAAAAGCTAAAATACAAACTTCCATAGATAGCATA 2468151 29 100.0 37 ............................. TGCAGTTTGACCGCTGGATCAGGCAGAAGGTAGCGGA 2468085 29 100.0 35 ............................. TACTAATTTTTGGCGAACAATTTTTTGAAGCTGAG 2468021 29 100.0 35 ............................. CTAAATTTCGATACTCTATTGCAAACCAACAACTG 2467957 29 100.0 37 ............................. ACGGAGGAAATAACATTTCAACTTGATGAAGCACATG 2467891 29 100.0 35 ............................. AAATAAATTGTAAAATCAATAATCCCTCTGTTTAT 2467827 29 100.0 36 ............................. AACATATAAAATTATATAACTGCCTTCATTGGTAGA 2467762 29 100.0 36 ............................. AAGGAAAACAATGTGTTGATAAATATTACACCTCCA 2467697 29 100.0 36 ............................. AATTTTGTTCTAACTACGTGAAATACTAATCCCAAA 2467632 29 100.0 37 ............................. CCTTCTAAAATTCCGATGTGTGTTTCTGTTGGTTGAA 2467566 29 100.0 37 ............................. ATTCTTCATAAGTGAGTTGCCCCATCCTTGCATAATA 2467500 29 100.0 35 ............................. TTGAGCGAAGAACAGGAAAAAATAAAAACTGTCTA 2467436 29 100.0 40 ............................. CCGTCTGAGGCCCAATAAGCTTGATGAATTCCTTTAGCTT 2467367 29 100.0 37 ............................. GAGGAAAATGAGAGAAATAGAGAAGTACATGATACCA 2467301 29 100.0 37 ............................. TATTTTTTCTTTTCATCAGACCATCTATATCTTTTTA 2467235 29 100.0 36 ............................. CAAATTCATCTTTAACAGGTTTTTCATCCTCAACTT 2467170 29 100.0 36 ............................. TCAAATGAATTAATAATATTTTTGCAACTTTCGTTG 2467105 29 100.0 36 ............................. AATACTTTCTAATCATCTTTTCACCTTTGCTTTCAC 2467040 29 100.0 36 ............................. CACAAAAGTTGAAAGTTGTCACTTTGCAAATGTCGG 2466975 29 100.0 35 ............................. TTCAATAACCGATTATGATACAGACAACAAAGCAA 2466911 29 100.0 35 ............................. TCATTTACACTTTCTAACATTTCGTTAGTCCACCA 2466847 29 100.0 37 ............................. CTTCACTGTACATTGCCTCAAACCTCCTAAATTTTAG 2466781 29 100.0 37 ............................. TTAAATTGCTCTTTAATCTCTTTTTTGCACTCTGTGA 2466715 29 100.0 36 ............................. TAAAAATAATAAAATTGTCTATAGTTTCCATATAGA 2466650 29 100.0 35 ............................. TCAGTCTGCTGGCGATAGGGTGGCTTGCGTCGGTG 2466586 29 100.0 35 ............................. TCTACAATATCATCTGCCATGGCATGTTTAAGCAG 2466522 29 100.0 36 ............................. CCCAAAAGAACTACCCTCATACCATGCAATTAGGTG 2466457 29 100.0 35 ............................. TAAGAATCCGTCCTCTTAAGTTGCTCACCCCCCAG 2466393 29 100.0 35 ............................. TTTCTATGTCTAAAGGTTTCACGTGTCCAACCCTT 2466329 29 100.0 36 ............................. ATTTACTCCAATCATGGATATGACAACGATAATGTT 2466264 29 100.0 36 ............................. CTTAAGCCGGGAGCGGAAAAGATTCTCATGCTTCTA 2466199 29 100.0 38 ............................. TAGGGAAAAGGACGGGAGTATTCAGGCCATAGTAAGGA 2466132 29 100.0 37 ............................. TATAATAGGGGTGTGGGAAAATGAGTAATAAAAAAAT 2466066 29 100.0 36 ............................. ATGTGAACTACAAAAATCCTTATAGATATTTCCATA 2466001 29 100.0 36 ............................. CTAAATCAACCGCCTGCTGATATTTCAATTCCGGTC 2465936 29 100.0 37 ............................. AGGGTAGGAATGGACTTTGGATTTGAAGACTCTTTTA 2465870 29 100.0 37 ............................. TCTTCATAACTTCTTGTTTGGATTCTTCCTTGAACAG 2465804 29 100.0 36 ............................. TAGAATGAATGAATTTATGACAGGAGAAGTATTAGC 2465739 29 100.0 36 ............................. TCGTATCAAGTGAGTGCAGATTAAGCCAGATACTTG 2465674 29 100.0 36 ............................. TTATGACTCTAATGGTGTTCCATATTTTTCTGTTCC 2465609 29 93.1 0 ................A.......A.... | ========== ====== ====== ====== ============================= ======================================== ================== 41 29 99.8 36 GTATCAGAATACCTATGAGGAATTGAAAC # Left flank : CATGAAAACAATCCTCCCAACATATTTTGTACTTTGAAACTATCATATAAAACAAAATAAGTCAATTGCATTGTAATTGGCTTATTTAACAAAGTTATTCTAAGCCGAAAGCGTGGCAGTATATTTGTACCAACTTAATATCCAGATTGCTTACCATATAGTGGCGGACTATAGCAATAGAAAAATTTTAAATTAATAAATTTAACAAGCTCATAGTAACCAAATTTCAAACAACTCTATATTATATATGTGATGAAAATTCCAGAAAAAAACTGCATATAGTCATCTCCTTTCAAAAGGGTTAAAATTAATTTTGACCCTTTTATTGAAATTTTTATCGTCGACCTCCAATAATGTAAAAACTACCGGGGTTCGACAATAATTTATTTTTTTATAAACATAAGCAAATCCAATACGTATGCCAAGATTAAGTGATAAACATACAATATTTGTTGATTTGACAAAAAAAGAGAAGTATAGTAATATCAATAAATAAATGA # Right flank : TATAACTTGGATGTATAAATATAAAAATAGGAGGGTAAGTATGCTTGAATTTAAATATGATACGCAACTATTAATAGATGGGAAGAATCTTTCTGAGGATAAAATTGGTGAATATATTACCAAAAATATAAAGGGAGATTGTTTATTAGCGGTCGGCAGTGAAGAGACGATAAAAATTCATTTTCACACGAATACTCCTTGGAAAGTGCTTGAATATTGTGCTTCACTGGGCGATGTTTATGATGTTGTCATAGAAAATATGGAACGACAAACCAATGGCCTAAAAGGCTAAACACAATTATATATGAGAGAAATTAGGATAAACAAAAGGGCCCATTAATTTGGGCCTTTTTTTGACTGGAAATATCTGAATTTTAATTTATAAAAAACAATAATAAAAGAAAGTCAAAATTTTATTGGAATTTCAGCAAAAAAATGAAAGTTTGACTTCAACAGATCAAAATAAATATGGTAATACTGTAGTAATGCATCATTTTAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCAGAATACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 8 2594614-2592800 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035282.1 Tissierellia sp. JN-28 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2594613 30 100.0 35 .............................. CGCATCATGTATTCTTTGGTATTCTCTATATCTTC 2594548 30 100.0 37 .............................. TCCATAACAAAATGAATATAAAGGAGTCTTTTCTTCT 2594481 30 100.0 37 .............................. ACTTGTTGGTCTTGCACATATAGAGTAATGGCAAGAC 2594414 30 100.0 35 .............................. AAAAAATATAAACCGTATAACCTTTCTATCTCTTT 2594349 30 100.0 35 .............................. TATGGATCTCCAGGAACAACTCTCCAGTCGTCCAT 2594284 30 100.0 37 .............................. TAAGCTACAACATAATATTGTGAATATATCGCTAATA 2594217 30 100.0 38 .............................. TTTGATTCAGCTCCGAAATCCTTTGCTACCTCTGCTAT 2594149 30 100.0 36 .............................. TAATTAAAGTTATATTCAGAACCCAATTTTTCCTTT 2594083 30 100.0 37 .............................. GAATATTTTGCCATTTCGCCCGACGAGGCCCCGATTT 2594016 30 100.0 35 .............................. TGGGAAAGCCCGACACCGACGAGTTATGGCAACAG 2593951 30 100.0 36 .............................. TATGCCGTCGACTTGGCATACTTTGCAAGGTATAAT 2593885 30 100.0 37 .............................. AAGCATAAATAAGATGAATGCTGAATACGAGAAAACA 2593818 30 100.0 34 .............................. GAAAATTGAAGTTTGATTCGGTTTTCGAGCATCT 2593754 30 100.0 36 .............................. CAGTATCAATCGTAGGAACATCTTCTCTAAAACCTC 2593688 30 100.0 36 .............................. TTTTCTACTTCTACTGTAAGAACGATTATTATATCT 2593622 30 100.0 36 .............................. TATTGGTTTTGAACTTCCAAAAACCACTCCACAACA 2593556 30 100.0 36 .............................. GCTACTATCTTTTTATCTTCTTTTGGAGTATCTACT 2593490 30 100.0 36 .............................. CTTTTTCTTCACCCTCTCCATGCACATAATCTCCGT 2593424 30 100.0 35 .............................. TGGGCCTGCGGTGAAAATGGCTACGGTCAACTTGG 2593359 30 100.0 35 .............................. CTATATTTTTTAATTGCCATATACACTCGGCAAAA 2593294 30 100.0 36 .............................. TATATTGTATCTTTAATTTCCATTGATTGCACACTC 2593228 30 100.0 36 .............................. GCAGGGAACGCGCTTGCGCTTCTGCCGATGATCTCT 2593162 30 100.0 36 .............................. TGGCATATTTGAAACTTAGCCATGTCATGTACCCTT 2593096 30 100.0 36 .............................. CTTGTTTTCTTGCTCAAAGTATCTTTTACGATTTTC 2593030 30 100.0 37 .............................. ATGGAGTAACAATAACAGAGCAGCCAGAGAAAATAAC 2592963 30 100.0 37 .............................. TTATAGTATTTTTTCTTTATTTTTGTCATTTTAGCTT 2592896 30 100.0 37 .............................. GGTTGTTCAGTGACCGTTACTCCATTGACAACTTCTC 2592829 30 90.0 0 ................A......C..G... | ========== ====== ====== ====== ============================== ====================================== ================== 28 30 99.6 36 GTTGAACCTTAACATAGGATGTATTGAAAT # Left flank : TTTAAACCCTTTAGTTTGAAGGAGATGATGTAAGCGGTGAAGATATCCAATTATAACTACGCTTTTCTTTTTTATGATGTAAATGAAAAGAGAGTAAACAAAGTATTTAAAGTTTGTAAAAAATATTTTAAACACCATCAAAAATCTGTTTTTAGAGGGAATATAACACCATCAAATTTAATCAAGTTAACTGCAGAACTAAAGAAAATTATAAATCCCAAGGAAGATTTCATATCGATCATTAAGCTGATGAATGAAGACAGTTTTGACGAAGAAACCATAGGGACAAATTATAAAGACAGTGAATCATTAATCTTATGATTTTTCTCAACCTGATTTTTAAGTTTATATAATTCCAGGTATTGAAAAATACATATTTTATGAATATAATATATGTATAAATAAAATTATAAAAATCGGTTGGGAAAATAAATATAAAGTTGAGAAAATAGCAGTCGTTGAGAGATTTTATATAAATGATGAACGTGTAATTTAATGTA # Right flank : TTATAAACATTGAGGAGTGAACTATTGTGAAAATAAAAAATGTTGCAATGATCGGGATGGGGGCAATTGGGACTGTATATGGTAGTTTTCTTTATAAAAGATATGGGTCAGATTTTGCTGTTATAGCAGGGGAAAAGCGAAATATAGAGCTTAAGTCGAAAGGAATTACTCTAAATAATAATACACTTTATCCTTTGGTGTTATCACCTGATAAAAAAGATATTAAATATGATCTGATAATTTTTTGCGTAAAAAATTATCAGCTTGATAAAGCAATCGATGATGTACGTAATTTTGTAGGCGAAAACACGATAATACTCACCATTCTTAATGGAATTACTGCCAGAGACAGAATATTGTCAGCATATCCGGATAATAAAGTTCTTTATGGTCTGTCTACGCATATGAATGCTGTTAGAACACATAAGGGCGTTTTTAGTACAGAGTATGGAGAAATTCAATTTGGAAATGGTGATAATACAGTAATTGCACCGGAAGTA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //