Array 1 131550-131911 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQNR01000033.1 Ruminococcus bicirculans strain MCC699 NODE_38_length_131933_cov_60.521759, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 131550 32 100.0 34 ................................ TTATGTTGATGTGTACGGAAACGATAAGCTCTTT 131616 32 100.0 35 ................................ CCGTTTAGACCTCACGCACGGCGGCAATTTCTACC 131683 32 100.0 34 ................................ TAACAAGAGCTTTTTCGTGATTAGTAAGCTCTAT 131749 32 100.0 34 ................................ GCTATTGGTTTGTCTATTCCAAAGGGGTGATTTT 131815 32 96.9 33 .................A.............. ACTCCGTGGAGGTGCGGCACCAACTACGATCAC 131880 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 99.5 34 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : GGCGAGCTAGATGAGTACCCGAACTATTTGCTGAAATAGAGGTGATATAAATGATGACCTTGGTAAGCTATGATGTATCAACAACAGATAATAAGGGTAAAACAAGGCTTAGAAAAGTAGCCAAAGAGTGTCAAAATTATGGTCAGCGAGTGCAGAACAGCGTGTTTGAAATAGACGTAGACTATGGCACTTTTCTGAAAGTGAAAGATAAACTTCTGAAAATAATAGACCCAAAGCATGATAGTCTGCGGATATATTACTTAGGCAACAATTGGAAGCATAGAATAGAACACTACGGCACCAAAGAGACCTATGACCCCGAAGGCGTCCTAATATTTTGACCAGCGTACCCCAAGTGATCCACAAATCCCTAGTAAGTTCGCATGAAAATGCCATGCTATATGTGAATGAACAGTGAACAAAATCAAACCGATACCAATTAAATAAAAAAATAAGTCCGCATCACGTTGAGCAAGCACCAGATATACACAACATCAAGT # Right flank : TTGCACCGCCACCAAAATTTGTACTGGTTTTGTCAATATCACTTGACACATTTTATTCGAACAAGAATTATGCAACGAGAAAGATATGATCATAGTAGAGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 299-68 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQNR01000065.1 Ruminococcus bicirculans strain MCC699 NODE_78_length_309_cov_60.809063, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 298 32 100.0 33 ................................ TGAAATAACCTTTTATTTCCTGCTCACACACTG 233 32 96.9 35 ...........................A.... TGCGTTCGGTCGGGTTTCCCTGCGGTCAACCGCGG 166 32 100.0 35 ................................ AAAACGTTCTTAGCTGAGTTTCACGTTGAAAGCCG 99 32 75.0 0 .......................TAGGTTTG. | ========== ====== ====== ====== ================================ =================================== ================== 4 32 93.0 35 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : TTCCCATTGATGACACACTCCTTTGTTTTTATTATACTTTGATTGTTTTGTATGTGTCAAGTTTTATTATACAGGATTATACCACACATT # Right flank : TCAATCATATTGGACACTATTATTAAGAAATTCGATAGGCGAAAACCATTTGAGGGGACGCATAGGAC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9087-8719 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQNR01000021.1 Ruminococcus bicirculans strain MCC699 NODE_23_length_19402_cov_61.312595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 9086 36 100.0 31 .................................... TGATTCTACCACAAAATACTCTCTTTCGTCT 9019 36 100.0 30 .................................... TGCTGTCATAAACTGCTTTCGGTTGTGTAC 8953 36 97.2 29 ..........A......................... CGTTGATGTTGCATACGCTATAGCATTAT 8888 36 100.0 31 .................................... AAAGTGTTTGCCTTTATGAAATTGGCTTTGG 8821 36 100.0 30 .................................... TTCCGCTTCCGTAATCAAGCCCACATATCC 8755 35 91.7 0 ............................-..G...G | CG [8722] ========== ====== ====== ====== ==================================== =============================== ================== 6 36 98.1 30 CTACTACACTGGTGCGAATTTGCACTAGTCTAAAAC # Left flank : GCCGCCCTCACGCTTGGGCAGAAATGTGCTTGGGGGTATGAACATTTTTATCACCTCTTGTATCCATTATATCACAAATGTACTTTTTGTCAATATAATAGAAAATTATTTTGCTGAAATTGTGATATAAATGCCGTAAAAACGTGATAAATGTGCAAAAACATAGACAAAAAAGTTTTTGAAAATTACACTTTTGTTGACGATGATAAGGTGGTATAATGTATACAGAACAAAGGACAGGAGGTGATAAAAATGGGAAAGACGATCCTTACGACTATCCTCATAGCCGTACTTGACTGCGCTATCGCAGCTGTCAAGGAGATTGGGGAATGAGATGAAATAACAACAGATGGGAGGTGATGAAAATGCTCTATGTAAAATAGCCACTTTCTATTGACATTTGTGTCTGAAAATGGTATAATATATATACATTAAAGCGTCGATAAAATAAGTTTGGTGTTTTATCACAGAATATCATTGATTATTTTGTCAACTTTGAC # Right flank : TTTAACATCAAAACCAACAAATAAAAAAATCCCTTAACGCTCAATGCGCTAAGGGATAACTAATATAAGGAGTAATATTTATGGCAAAAAAGAATAAAATGAAGCCTAGAGAGCTGCGTGAGGCTCAGAAAAAAGCCAGACAGCTCAAAGCGGCTGAGATAAATAATAACGCTGTTCCTGCGATCGCTGCCATGCCTGCTGCAGAGGTCATTGCACCTGCGGCAGAGAAGAAAAAATCCTCCGTAAAGGCGGCAGGAATGAAGTCTATTCTTGTCAGCAAAAATAAAATGTACATAACCTCTTTCGGCAAGGGCAATTCTGCTGTGCTTGAATATGAGGTGGATAAGGTGGATAATGATAACTACAACAAAACTCAGCTTTCTTCAAAGGACAACAGCAATATCGAGCTTGGTGATGTAGACGAGGTAAACATCACTTTTTCAAGCAAGCATGGCTTTGGGAGCGGAGTGGAGATAAATACTTCAAACCCTACTCACAGA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTACACTGGTGCGAATTTGCACTAGTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //