Array 1 21198-20569 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_ALLE01000027.1 Streptococcus suis 6407 Contig00027, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     21197	    36	 100.0	    30	....................................	ATTTGATGTGGCATAGGCAATGTGTAAGTA	
     21131	    36	 100.0	    29	....................................	GTTGGTTGTTCTTGTGGTACTTTCTTCAT 	
     21066	    36	 100.0	    30	....................................	CAATGATAACGGTAGCACATTAACAGAAGA	
     21000	    36	 100.0	    30	....................................	AAAGCAAATCGGTAAGAGGGGTTACCCTGA	
     20934	    36	 100.0	    30	....................................	AGGTTGTTGAGTATCGGAATTATCGAGAGT	
     20868	    36	 100.0	    30	....................................	TTGCTAGTGCAACCTTACCAACACCAGGTA	
     20802	    36	 100.0	    30	....................................	CTCTATATGTTCTGGTTTAGTATCTAATAA	
     20736	    36	 100.0	    30	....................................	ATTAGATGAAGCCATTGAGTTTGACTATAA	
     20670	    36	 100.0	    30	....................................	GGCTGCAAGTGCCGCATCTATCATTGCTAT	
     20604	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        10	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC	                              	       

# Left flank :   GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG
# Right flank :  TGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTATCAAAAAAGAAAGGGGATTGTAGATGGATTCAAAAACAATTATTATAACTTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTACCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAACGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGTCCCAACCCCTTTTCCATGCTATACTAAATATTATCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGGATGATTGTTGGACTGGGA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-2.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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