Array 1 3965101-3963563 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR881463.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate S.Tm LT2p22_assembled chromosome 1_Linear- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3965100 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3965039 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3964978 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3964917 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3964856 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3964794 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3964733 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3964672 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3964611 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3964550 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3964489 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3964428 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3964367 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3964306 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3964245 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3964184 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3964123 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3964061 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3963958 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3963897 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3963836 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3963775 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3963714 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3963653 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3963592 29 96.6 0 A............................ | A [3963565] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3983214-3981233 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR881463.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate S.Tm LT2p22_assembled chromosome 1_Linear- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3983213 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 3983152 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 3983091 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 3983030 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 3982969 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 3982908 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 3982847 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3982786 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 3982725 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 3982664 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3982603 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3982542 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3982481 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3982420 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3982359 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3982298 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3982237 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3982176 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3982115 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3982054 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3981993 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3981932 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3981871 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3981810 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3981748 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3981687 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3981626 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3981565 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3981504 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3981443 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3981382 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3981321 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3981260 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //