Array 1 45814-45180 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXMG01000038.1 Aquabacterium tepidiphilum strain YIM 730274 contig038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================= ================== 45813 35 100.0 32 ................................... GTTTGTCGCAGATAGTCGAGGTGCTCTTTTTC 45746 35 100.0 32 ................................... CAAATCACGGTGTTGGCCCAGCTTCTCATTCA 45679 35 100.0 31 ................................... GCCTCAAAGAAGCGCGTTGCACGCCTCTTCT 45613 35 100.0 31 ................................... AGCATCGCCCAGAACTGCGAGAACATCTTAA 45547 35 100.0 32 ................................... ACTTTCTCTGTCTTTGGGAGTTCCGGCTCAGG 45480 35 100.0 32 ................................... TTGATGGTCAGCTCGCGGTTCTTGGCCGTGGT 45413 35 100.0 30 ................................... TTGCTGCGCTTCGGATAGGTGCCTTTCCTG 45348 35 100.0 33 ................................... TCCTCAAGGCGCTTCAGGCGCTCCTCGATCTTC 45280 35 91.4 30 .......AC.........................T TTCTGCGGGTACGTTGCGGCTCCTGCCTTG 45215 35 71.4 0 ...T.C...G.......CA.A....A..GG..A.. | C [45213] ========== ====== ====== ====== =================================== ================================= ================== 10 35 96.3 32 GTTCTGGCTCCCCGATTTCCGAAGGGGATTGAGAC # Left flank : GCGCGCGAACGTGCGCAGCAACGATCCCGGGCGGGAGCCTCCGCCGCTGGAGGCCTGCCGGGGCAGCTTCGAGCGCTACATGGAGGAGCAGGTGCCCGGCTGGCTCAGGAGCCCGTCGATGACGGAGCTGCTGGCGATGGCCGACCCGCGCCTGCCGCAGGCCAACCGCACCACGCTCGCGCCGCTGAAGCTGGAGATGCAGGGGGCGAACGGCTTCGCGGAGGTGAAGAAGCGCGACCAGCGAGCGGCGCTGCTGCCGTACTCCAAGCTCAGGGCCTGAGCGGGCGGGGCGCAGCGCCCGCCGGCCTGCGCCCTTCCTGCCAACAGGAGACCGTGAACGGGAACCGTTCGCATCGAGCTGTCAGCAGATTGATTTCAAAGGACTTTTCGGCATTTTTCGGGCGGTGCGACAGGGTCGATGCTGAAAAATGCGGCAAACCGGCCGCGCTGTCCGCAAACCCCTTGCAAGTGCTTGATTCCATAGGGGGTTACACGCTAGA # Right flank : CGCGCAGTTCCCTCTCCGCACCGTACTCCTGACCCCATGGACGACATTCCGCCTCGCCCCGAATCGCCTCAGGAACTTCCCTTCCTGGAAATGAAAAATCCCCAAGTCAGAACCTTCGATGAGCTGCTCACGGCCGAGGAGCCAGCGCCCCTCGCGATCGACCAGTACCAGCGGGGATTCGTGTGGGGCGAGGACAAGGTCCGGCAGCTGATTGGCGACCTGAGGGACTACGTTGCCTCGGCGAGGAACACGCGCTACTACCTGGGCACGGTGCTGCTGCACCGCAAGGAAGGCCACCGCTACATCATCGACGGCCAGCAGCGCCTGACCGCGCTGTGCATCCTCCACTGGCATCTCCGCGGCGAACTGCCTCCCGGCACCGAGTTGAGCTACCGCTCGGTGGAGTCGCGGCACAACATCCACCGGGCGCTGGAATGCTTCCGCAAGGAAGCCGGTGCGCTGCAGCCTGACATCTTCCGCCACCTGTGCTTCACGGTCAT # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTGGCTCCCCGATTTCCGAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 10118-10552 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXMG01000095.1 Aquabacterium tepidiphilum strain YIM 730274 contig095, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================ ================== 10118 35 100.0 32 ................................... GAATTGGGTGAATGCCATGGTGTATCTCTCCT 10185 35 100.0 31 ................................... GCGCTTCTTCGGCGACAGCGCGGCTTCCAGT 10251 35 100.0 32 ................................... CGCGACTCAAGCGTCAGCGACTCCAGCTCCTG 10318 35 100.0 32 ................................... CAGATGACGCTCCCCTCGGCCAGGGCGTCACC 10385 35 100.0 31 ................................... TCTCGCACGGCAGCAGTAGGCGCATGCTCCG 10451 35 97.1 32 ....................A.............. AGGGTGTGGTAAGGCGTTGCCACCTTCTCCAA 10518 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ================================ ================== 7 35 99.6 32 GTTCCGGCTCCCCGATTTCCGAAGGGGATTGAGAC # Left flank : CCGAGCGGATCTGGCGCAAGTATCCCGGGCTGTGAGCCGGCGGCGCGCGCCTGCTGTACCCCATGCCCGATCGTCCGCGCGAGCTGCTCGATGAGCCCGGACACCCGGTGGTTCTACGCGCTCCCCGGCAAGGCCGTCGCCGGCCTCCTTCACCGCAGCCGGGGTATACCCGGGGGGCTGGTTCTCGTCGTGCTGTTCTCGCGGCTCGCTGTCGTCCCGCGGTTCGTGGCGGGCGTTCTGGCGGCGCTGCTGCTCGCCGGCCTCGCCCTCGTCGCGCTGCGTGCGGTCCTGGGTGTACTGCTCGGCAGGCGGGGAAAGGGTGAAGCCGCCCGACTCGACGAGAATCGTTCGCATCGCGCTGTCAGCAGCTTGATTCCAAAGGACTTTTCGGCATTTTTCCAGGGGCGCGAGAGGGTCGCTGCTGAAAAATGCAGCAAACCGGTCAGGCTGTCCGCAAACCGCCTGCAAGTGCTTGATTCGATAGGGGGTTACGCGATAGA # Right flank : CCGCCAGGTGCCGATTTTGGAGAGGCAAGAAAGTGTTCGCTACAAGGCGCAGCAAGCCGTATTGCCGAAGATTTTTTAGCGATTACGAGATTTTATTTGGGCACGGAGCTTTATGTTTTCGATTTCGAGTTCAATCGCCCGAAGCTTCAGTCGCAGTATTCCTGTTTCTGCCTCGGCCAGCAACTCGTTATACTGCGCTACCAGACGATTATATGTGCCGAGACTAATGCCAGTGTTGTAATGGGCGCGGGGCAGGGGCGAAAAGGCTGAAGCTAGCCACGCTTCGATAGGGGCCCGAAGCATGTCCGCGCATTGCAGTGCTGAGATTGGATTGCGAGACTGATCGTTGTACATAGAAACCTCTTCGTGTCAGGGAACAAGTGTGGGTACAACGTTGGGTGCAAAAAAACCATGCGCTGAAACAGTACAGTAACGTAACCAAGGCGTCAACTTCTTGGGTACATTTTAGCCCTGCTTACCCATCAGTGCTTCTTGGCCTT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGGCTCCCCGATTTCCGAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.40,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 869-1102 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXMG01000079.1 Aquabacterium tepidiphilum strain YIM 730274 contig079, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================ ================== 869 35 100.0 32 ................................... GCCTATGAGGCGATGGCCCTTGGCTACGAGAC 936 35 100.0 31 ................................... CCGTTACCGCCACCGAAGCCGAGCAAGTCGG 1002 35 100.0 31 ................................... TCGTGCCGGCCCCCATGGGCCGTACGCCCCA 1068 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ================================ ================== 4 35 100.0 32 GTCTCAATCCCCTTCGGAAATCGGGGAGCCGGAAC # Left flank : GCCGAGATCAGCGTGGCGTCCACCACGGTACCCGCGCGCAGCATCAGCCCCTTGTCGCGCAGCAGCTCGTTGACCCGGCGCAGCATCTGCTCGGCAAGCTTGTGGCGCTCCAGCAGGTGGCGGAATCTGAGGATCGTCGTTTCGTCGGGCAACCGTGCCTGCCCGTTGCCCAGGCCCGCAAACTCGCGAAACAGCGGCACGTCGTGCAGCGCCTCTTCCATGGCCGGATCGCTCAGCGTGAACCACTGCTGCATGAAGTGGATGCGCAGCATCGTCTCCACCGCAAACGGCGGGCGGCCCCGCCGGCCCTCGGGCGCATGCGGCGCCACCAACTCCACCAGCGCCGCCCACGGCACCACGCGCTCCATCTGCTCCAGGAACTCGCGCTTGCGCGTTCGCTTGGTCGACAGGTTCAGCCCGAGATCAGCTTGCTTCATGGCCCTGATCTTCGCTCAGCACACTTGCTGCAGCTTTGCGCAGAGGTTCCTTAAGGCAATCAT # Right flank : CTCTAGCGCGTAACTCCCTATGGAATCAAGCACTTGCAAGGGGTTTGCGGACAGTCCGGCCGGTTTGCCGCATTTTTGAGCACCCACCCTCTTGCGAGCCTCGAAAAATGCCGGAAAGTCCTTTGAAATCAAGCTGCTGACAACTCGATGCGGATCGTTCTCGATTCCGCGTCCGGCAACGGCCCGAACGGCCCACATTCCGCTTCCTGCCTTCAGCGCAGCACGTCGCGCGTCCCGTCGGGGCTGATGCGCCGCGACTATCGGGTTCAGCGAGCCATCCAGTCCCGCATCCACGGCACGAGGCGCCCCACCTCCTCGGCAGCGAGCACTTGGACGCCGTACTCGCGGGCGCGCTTGAGCGCCTCCTCGCCCACGGGCTGCGCGCTCAAGTAGAGAGCGCCGGCGACGCTGCCACCGAGCCTCTGGCGCAGCTGCGCGAGCTTGTAGAGCGCGTCCTGCGGCTTGGTCTGGCGCCCGGTCTTGCACTCGATGAACAGCGC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATCCCCTTCGGAAATCGGGGAGCCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 17269-17903 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXMG01000079.1 Aquabacterium tepidiphilum strain YIM 730274 contig079, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================= ================== 17269 35 100.0 32 ................................... CCCCTCAGGACGACCTCCCGTGCCGCGTCATA 17336 35 100.0 31 ................................... ATCTTCCGATCCGGAGTGGCGGTCGGTACAA 17402 35 100.0 32 ................................... AAGAGCCACTCGATTACGTGCTCTTCGTGCTT 17469 35 100.0 33 ................................... CTTGACGGCCCTGATGATCGCGAGCAGGTCGTG 17537 35 100.0 32 ................................... AACTCCTCGTGAGGAGCCACGCAGTGAGCCTG 17604 35 100.0 31 ................................... GCCGTCCACCAGCACGAACTCAACCTCCAGC 17670 35 100.0 32 ................................... CGTGGCAGAACGCATCCACGGGGGGCTCGAAC 17737 35 100.0 30 ................................... GCGGTGAAGAAGCCACTGAACATCGCCCAC 17802 35 100.0 32 ................................... ATGATCTCTGCTGCGTTCGCAACGTGCTGACC 17869 35 97.1 0 .................................G. | ========== ====== ====== ====== =================================== ================================= ================== 10 35 99.7 32 GTTCGGCTGCCCCGATTTCCGAAGGGGATTGAGAC # Left flank : AGGCGGGCCGCCAGCTCTTCGACCCCGCCCGCACGCAGGAAATCCTCAACAAGCTCAGCATGCTGCGAACCGACCTGGGCGGCACTCATGGCCAGGCTTGGATCCTGTGCACCGGCCGCATCGACGAGCAGAGTCACGCCGAGGTGCTCGAACGTGCGGCAACCGCGCAACTCCAGGTGCTCGGCGGACCCGAGTTGCGCGACCTGCCGCAACGACTGGCCCGCGCGCTGGACTTGGCTCCGCCCGCCGGCGAAGGCTGGATCGACGCGCCGCTGTCTCCCCGGCGCTCGCTCCCGGCGGGCGCTCATTGACCGTCCTTCCCCGCAGCGCCCTGCCATTGGGAACGATTCGCATCGCGCTGTCAGCAGATTGATTTCAAAGGACTTTTTGGCAATTTACAGGGTGGGCGCGAGAGAGCCTGCTGAAAAATGAGGCAAATTGCCCGACCTGTCCGCAAAGCCCCTGCAAGTGCTTGATTCAAAAGGGGGTTACGCGCTAGA # Right flank : CAGTTGCGGGGCGCCGCTAACGTCTTGCCAAGAGGTTTCGCCGCTCCGATTCCCACGGGCGCAGAATTTCCCGCCTTCCGAAGAAGAAAGCCGGCCCGTGCCGGCTTTTCCTTTTCGCGGCCAGCTGCCAACGTTGCCAGTCGCTCGCATCACATTGGTTCTGCCCGACGATCGCATCATCCCGATCCGCCGGAGTCCCCGCGATGCCGAACCCGAATCCCGCCGTGCTGTCCGAGCCCTCCCCTGCCGCCGTGCCGCCCGTTGCCGGGCTCCTGGCCCGCGCACTGGAGGAGCACCACCTGTTCGAGGCCTGGGAGCGGGTGCGCGACAACGACGGCGCTGCCGGCGTGGACGGCCAGAGCATCGAGGCTTTCGGCCGGCACTTGTTCGGACAATTGCAGCAGCTGAAGTCGGAGGTCGAGCACGGCCGCTACGCGCCGCAGCCGCTGCTGGCGGTGGAGATCCCCAAGCGCCACGGCGGCACCCGCACGCTCGCGATC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGGCTGCCCCGATTTCCGAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 21599-20894 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXMG01000079.1 Aquabacterium tepidiphilum strain YIM 730274 contig079, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================= ================== 21598 35 100.0 31 ................................... ACTCGGCGTCGAGCTCGAGAGCCTTGATGCG 21532 35 100.0 31 ................................... AATCTGCCTGCGAGCTGTGCCGAGATACTCG 21466 35 100.0 32 ................................... ACAGCGGCCTTGACCTCGACCGGTGCCTCGAC 21399 35 100.0 31 ................................... AGGGTTCTGAGTTCTTTGGGGACTTCTTCAA 21333 35 100.0 33 ................................... TTAGCCCAGCTGCTTCAGAGCATCCTCGACGCC 21265 35 100.0 33 ................................... TGAAGAACTTACCGTTGCGGGCGATAGCTTTGT 21197 35 100.0 31 ................................... ATCTCCGCTGCTGTGCCAATGTGCTGGCCCG 21131 35 100.0 33 ................................... AAAGCTCATGGTGTCCTCACTTGCTCGTTGCGG 21063 35 100.0 32 ................................... TGCGAAGAACGAAGCGAACATCGCCCACATCT 20996 35 100.0 33 ................................... CGGAAGACATCGTCCATGAGATCCACGTCCTGG 20928 34 80.0 0 ......-......A....G.C..........CCC. | G [20916] ========== ====== ====== ====== =================================== ================================= ================== 11 35 98.2 32 GTTCCGGCTCCCCGATTTCCGAAGGGGATTGAGAC # Left flank : GAAGTTGACCCGGGAAATGGAGCGCATCAGCGAGCAGCGCGGCGAGCCCTGGGTGCTGGTGGAGCTGATCGAAACCGAGTTCCTGATCGGCGTGCGGCGCAAGGCGCTGCGGGTGACGGACGAGAAGGCGCTGCACAAGCTGGAGGCCCAGTTGCATCGCCGGCTCGACGCGCTATCGGACGGGCGCTATCAGTTCAGGTTCCAGTCCTTCCCGGCCTGGATCCACATCCAGTTCTTCCCGCGCCCGGGGGTCAAGGTCGGGGCAATCACTGCCTGCCTGCGCGAGTTGCTGGGCTGATGTCCGTGCAGGGGCCGAGGGGGGCCGGGCGCCTCGCCATCGAGAACGGTTCGCATCGCGCTGTCAGCAGATTGATTTCAAAAGACTTTTTGGCAATTTTCAGGGTGGACGCGAGAGGGGGTGCTGAAAAAAGCGGCAAATTGCCTGACCTGTCCGCAAAGCCCCCGCAAGTGCTTGATTCCAAAGGCGGTTACGCGCTAGA # Right flank : GGCTCGGCAAATCAACCTCCATCTCCGGCGCCTGCCAGCCCCTCACACCACCACTGCCCCCTGGATCGGTGCCGGGCTGGCCGCCCCGAGCTGCACCGCATCTGCCCGGTCTGCCGCGCACAGCGGCCAAGCGCGCCATTGGTCCGCCACCGGGTCGATCAGCCGGTCCAGCGCGCGGCACACCGCCGTCCATTCGCCCGCGCGCAACGCCAGCTCGTAGACGCTTTCCTGCACCCGCACGCCGTGGTCGCACAGCAGCCGCGCTGCCTTCGCCCGCCGGCGCGGGCTGCCGATGTCGTAGCTCACGAGCACCCGCTGCATCGCATGCTCCCTCCTTCGCTACACCACGTGATGGCTGCAGTGATCCACCGCGCGCCGCTGGCCGTTGACCCGTGCCGCGACGCGGCAGTGCCGGCACACGGGCACCAGCCACAGCCGGTCCTCTCGCGGCTCGATCCTTGCCGCCAACTCCTGTTGCACCTGCGGCAACTGGTCGGCGC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGGCTCCCCGATTTCCGAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //