Array 1 43-1346 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNLP01000020.1 Bifidobacterium canis strain GSD1FS Contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43 29 72.4 31 ....................ATGATC.GA TGTTCGCGTTGTCGAGGCTTATTTTCACCTT 103 28 96.6 32 ....................-........ TACACGGACACCACGCTGCGTGTCATCGACAA 163 28 93.1 32 ....................-.......T CGTTGCGCCAAATGGATGTACGGTATGACCTG 223 29 100.0 32 ............................. AGTTCAACGGCCGTGCGGTGCACGACGGTCGT 284 28 96.6 32 ....................-........ ACGTATCATCAACCGGACATCGGGCTTGGCCG 344 29 100.0 31 ............................. TCGCCGTTCGGCCGCGCGAGTCCATACACAA 404 29 100.0 32 ............................. TCAAAACCGTGACCGGGATCGATCTGGCCGGG 465 29 100.0 32 ............................. TCGTGCGCCTGCGTGACTTCGACGTTGGTTAC 526 29 100.0 32 ............................. GACGACGCATGAGCATCGACCTGACACAACAA 587 29 100.0 32 ............................. CAGCGCATCGTGCCCATCGGCGACGACCTCGC 648 29 100.0 32 ............................. TCATGCGTGGCCGCGTATGTCGCCGTGGCGTA 709 29 100.0 32 ............................. AACAACCAACCCGCATGGGTGAGGCTCAGTTG 770 29 96.6 32 ............................A TGTACTGGGTGATCTCCGAGATCTGCTCGAAC 831 29 100.0 32 ............................. CCGAGCAGAAGTCGCACGTTGTAAGAGACATA 892 29 100.0 32 ............................. CATGACGCGGCCGGTCTCAAGCGTGCCGGAAT 953 29 100.0 32 ............................. TACGCGGTGTTGCCGAATACCGAGTTGTCGTC 1014 28 96.6 32 ....................-........ ATATTGGACAACGACGGCGGCAAGAACCGTTT 1074 29 100.0 32 ............................. TCTTGAACCTACGCATATGATAGCCGATTCAC 1135 29 100.0 32 ............................. GCGAGTTGTCTGGTGAACGGGTCGAGCGTGTC 1196 29 100.0 32 ............................. CATGTGCTGTCATAGCTATTATGATAGCACAT 1257 29 100.0 32 ............................. TTATGACTAGGAAGACTGCTATGACTCGTTGG 1318 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 97.8 32 GTTTGCCCCGCACTCGCGGGGATGATCCG # Left flank : GGATGATCCGTCGGCTTTCTCACTGTCGGTCAGGTAGATGCCG # Right flank : GCTGCCAGTTGAGACCCGCCTTGGCGGCGAAGCCGTTGGCGGCGAATCCCTGTTCGGCGAGCTTCTGGCCGAGCAGTGCGACATCGGCCGCATAGTCCGTGCCGGTGCCTTCGGCGACGATGTTCTTCGCGGCGGTCGCACCTGCGAACACGTCGGTTCCCCACGTGGTCGGCTTGTCCACGCCGAACAGTGCGGCCTGATCGATCTTCTTGCCGAACGCTTCGGCGATCAGCGGTTTGATCGCCGCCCACAGGTCGATGTCGGCGTCCTCGACCACGGAATCCGGGATCGGTACGAGCACGGCGAGTTCCTCGGCTGTGATGCTCACGTCCTCCCAATCGGTCTTCGTGGTCTGCTTGAGACCGCCTTCCTTCACCCAGTAGGCGTCAGGCAGGCTGGCGAGCACGGGCTGCGTCTTCTTGAGCTTGCTCATGGTGACGCGGCGTGCGCGCGTGGCGATGACCGACTGCTGTGGAAGGGTTTGGATGATCTCGGTGGAG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACTCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2976-3123 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNLP01000020.1 Bifidobacterium canis strain GSD1FS Contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2976 29 100.0 32 ............................. TGCGATCTGGCTACCGTGTTCGCCGCGCACCG 3037 29 96.6 31 ............................C TCATGCCGTCCATCGCGTCCATCATGCTCTC 3097 27 93.1 0 .....-...........-........... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 96.6 32 GTTTGCCCCGCACTCGCGGGGATGATCCG # Left flank : TGATTGATGTTTCACGCCCGTCCTGCGGGCAATAAAAATCCCCGACGGCCACTGGCCGACGGGGAAAAGAATTCAATGCGATTATTGTTGACTATTCAAAAGATTCGCGAATATTTGAATCTCTGGATAATCCTTGTTCTTCGTGAGTTGTCTCACGGAATCAGGGAATTTCCGAAGCAAATCCGGGTTATCATGTGCGAGATCCAATGCCCTCACCACCGCAAGATCAGGCTCTCCAACGTCAATGAATGTCTCCAGATCCTCATTGGGATACACGGGTTTGATTATGTCTATGCATTGCTTGGCGATCTCGAACAATTGCGTATACATGTCGTCCATGCCGATCACCTCCACTTCTTTTTGTTGGAGAATCCAACTTCTATTCTACCGTTTTCCGTCACCCTCACAACACCGACGCCGCCTGCTGGGAAAGCTCGATCGATCTCATACAACCCGTTTCGTAAAAACGCTTGGATTTCGATTTGCACATCATCGACGAC # Right flank : GCGCGCAACGCGGGGAGCATGCGTTCGGTGACGTTTGCCCGCACTC # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACTCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1587-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNLP01000021.1 Bifidobacterium canis strain GSD1FS Contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1586 27 93.1 32 ........-...........-........ ATCACAGACATCCAAGGCGACGTATCCAACGA 1527 29 100.0 32 ............................. GAGACACGGCATGATGAACGCTGACAAGTGGG 1466 29 100.0 32 ............................. CACAGAGATGGGCGAACGCCGAACGGGAATTT 1405 29 100.0 31 ............................. GAAAAACGACACGCCGAAGACGGACGAGATT 1345 29 100.0 32 ............................. GTAATGAATGGCGAAGCGTCGTGACCTGATCT 1284 29 100.0 32 ............................. CGGCAGCCACCACGATGCTTCAACCAGTCGAG 1223 29 100.0 32 ............................. GCTGATCGCCTATAACACGTTGGCGGGCATTC 1162 29 100.0 32 ............................. CACGCGGACTGGGATAATCCTCTGCGTGAGAT 1101 29 100.0 31 ............................. TCTATATCATGGTTTGCGCTCGTGCCGCATA 1041 29 100.0 32 ............................. ACCCGCGCCGAGGAGCTCCTGGCCCGCGCGAC 980 29 100.0 33 ............................. AACGGTTTTTCTTCGCGAGTATGTGGCATCAGT 918 29 100.0 32 ............................. CCTTGGTTCGGTGGAAATCAATGTGGCCGGTC 857 29 100.0 32 ............................. GGCGGCTACTATCGCGTGCACACTGACGATGT 796 29 100.0 32 ............................. CCTACTTAGCTTGCGAACCTCAAGAGACCTGA 735 29 100.0 32 ............................. GCGGCACGTTCCTCACGTCGAACGAGCGGATC 674 28 96.6 32 .................-........... GATCCTCCGAGGGAGGCGGTCTCCTTGGTCAG 614 29 100.0 32 ............................. ATTTGATTGATTGAACGGCTGCCGTGCCGTCA 553 29 100.0 32 ............................. CGACTCTTCCGGCGCGACGCGCTCGACAGCGA 492 29 100.0 33 ............................. TTGCAAATCAACGCCCATGTTGTCAAGCTCAGG 430 29 100.0 32 ............................. AGCAAGAACGGCAACGACATCAGTTTGCCGAT 369 29 100.0 32 ............................. GTGCAGACCACCACGCGCGTCACCAGCGAACT 308 29 100.0 32 ............................. CAGACGCGGTGATAATCAAAGCCACGGAAGGC 247 29 100.0 32 ............................. TTGCCGTAGGTGAATCAGTGGCGAGCGTGCAA 186 29 100.0 32 ............................. GCGGTGCAGCGCCAGCTCGGGCACCGGTCGGA 125 29 100.0 32 ............................. CTGAGTTTTGGCGTGAGTCTGAGACACCGGCG 64 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.6 32 GTTTGCCCCGCACTCGCGGGGATGATCCG # Left flank : GGATGATCCGACCGCGCCGAGGAGCTCCTGGCCCGCGCGA # Right flank : GTAGGCGAACTCGCTGTTGAGGTAGGTGGCGAAGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACTCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 30-1277 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNLP01000022.1 Bifidobacterium canis strain GSD1FS Contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30 28 96.6 32 .................-........... CCGTCTGGGAGCTGCGCGAAGGGCATCTGCGC 90 29 100.0 32 ............................. CGCGGTGATACCGAGGCCGAACAGCAGGCATA 151 29 100.0 32 ............................. AGTTGCGAGTCCGGCATTTCCGCGAGCATGGC 212 29 100.0 32 ............................. CCGTCTGGGAGCTGCGCGAAGGGCATCTGCGC 273 29 96.6 32 ............................A AAGCCGCCTACGTGAACTCGAGGAGCGCGGAC 334 29 100.0 32 ............................. GAGAGAAAACCATGAGCAACGAACAACAGATT 395 29 100.0 33 ............................. CGAACGATGGCGACGGGCTCACGTTGGAGGGCA 457 29 100.0 32 ............................. ATCGCCACCGATATAGAATGCCGCAGAATCAT 518 29 100.0 32 ............................. AGTTCGCCGGGCACGTTGAGGAACTTCAGGTG 579 29 100.0 32 ............................. TTCCTTCTGCGTCACGACATAGGCTTTGATGT 640 29 100.0 32 ............................. TTCGCAACCGCTGTGATTCGCGGTGACTGGCA 701 29 100.0 32 ............................. GGCGCGAGCGGTCAGGTGCAGAAATACGCAGC 762 29 100.0 32 ............................. GATTGTGGAACGACTCTACACCGCCTATCACC 823 29 100.0 32 ............................. GCTTTCCCTGTTCGACTCGATGGCCTTGTTCG 884 29 100.0 32 ............................. GCATTGGAATCACGTGACCTGAAGGAGGGGAG 945 29 100.0 32 ............................. GTGACGAGATCGCCTTCCTTGAGCATGGAACG 1006 29 100.0 32 ............................. ATCTGGAACCTGCGCCCCACCCACTGGCGTCC 1067 29 100.0 32 ............................. CATAGAGGATTAACCAATTATTCTTCGCTTAG 1128 29 100.0 32 ............................. GCATCCTGTGCCTCATCAAGATTCTTCCCAAT 1189 29 100.0 32 ............................. ACCCGCGCCGAGGAGCTCCTGGCCCGCGCGAC 1250 28 96.6 0 .....-....................... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.5 32 GTTTGCCCCGCACTCGCGGGGATGATCCG # Left flank : CCGCTCGTCGCCGGCGTGATTCTTGAACCG # Right flank : ATCACAGACATCCAAGGCGACGTATCCAAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACTCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [16.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1442-61 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNLP01000005.1 Bifidobacterium canis strain GSD1FS Contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 1441 36 100.0 28 .................................... TTACGTGAGGAGCGAAATGATATTGCTG 1377 36 100.0 28 .................................... CGGACTGCACGGTGTACGTGCGTTTTGC 1313 36 100.0 29 .................................... TTACATGAGGCGCGAGATGATACTGCTGA 1248 36 100.0 28 .................................... TCGTGCAGGGCTGGCGGTGGCTGCTGAC 1184 36 100.0 28 .................................... ACTCGTATTTCGCATTGCCTAAGGAGGC 1120 36 100.0 28 .................................... GTGCATGAGGATACCGGCCAGATGATCC 1056 36 100.0 28 .................................... CGCAGTTCCAGCTTTCGGTTTTCTCCCA 992 36 100.0 29 .................................... TGGTGAGCCGCAGCCGGACATGACACCCA 927 36 100.0 28 .................................... TGGCGCACACGGGGCAGGTGACCGTGGA 863 36 100.0 28 .................................... GGACGACGAGAAGCTGATCCTCGCGAAA 799 36 100.0 28 .................................... TTCGTCAAGGTCGAATTCCATGCGAGCA 735 36 100.0 28 .................................... TTCCGTGCAACCTATCATAGGTCGCTCG 671 36 100.0 28 .................................... AAGGGACTTTCGTTGTAGGTGCCCTGTA 607 36 100.0 28 .................................... ACCCGCATGGCCTTACCGTCGGCCGTTG 543 36 100.0 28 .................................... TGAGCGTGCGCGCCTCCATAAGCCTTTC 479 36 100.0 28 .................................... ACACGCTGAAACGATGGCTTAACTTCGA 415 36 100.0 28 .................................... CATGACCGCGCTCATCAAGCTCAAGGAC 351 36 100.0 28 .................................... CTACGGCCCCAACGATGGCCTACAGGAA 287 36 100.0 28 .................................... AGACGCTCCGTTGACGCTTTGGCTCGAC 223 36 100.0 28 .................................... CCTCCTCCGGCGATTCGAGCAGACCGTT 159 36 100.0 27 .................................... TTTCTTTTCTGGAGCGTTCCCCTCCGC 96 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 22 36 100.0 28 CAAGTCTATCAAGAAGGTAAGAGGCTAATTTCCAGC # Left flank : CGCACAATTCAATGCAGGGCTGACCATTCCAAGTTCGATCAATGATTTTGCTCAACAATTTGGCTTGTACTGCGAATCCAAGCAGCGTGCCCTATCTGTGCCAGTTTTTGGAGCGGATGATGAAGAAGGATGAGGATAGTGGTGGCATGTGGTGCCTAGTGATGTTCGACCTTCCTGTCGGGACTAAGAGCGAGAGACATGAAGCGACCGTGTTTCGGAACTTGCTTCTTGACATGGGATACATGATGGTGCAGTTCTCAGTGTATGCGAGATACACACCCACCCAATCCGGTAACAGATCAACGATCAACATGATTAAAAAGCATTTGCCATCAGGCGGAAAGGTGAGAGTGCTTCATATCAGCGATCATCAATGGGCACAATCTTTAAGGTATGTCAATAATGTTCCGCAGCATAATACTGAAGCACCAGACGTATTTACACTTTTTGATTATCTTTTGCCCAAAATCGTTGGAATTCTTACCTTCTTGTAGGCTAAT # Right flank : CAAACCGTTGACGCGCCATTCGAAAACGGCAAGTCTATCAAGAAGGTAAGAGGCTAATTTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTCTATCAAGAAGGTAAGAGGCTAATTTCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 28310-28637 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNLP01000013.1 Bifidobacterium canis strain GSD1FS Contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28310 29 100.0 32 ............................. TCGTCGGTGAAGACGGTCTTCATCTCGATGCC 28371 29 100.0 32 ............................. TTCGGCCAGCCGGTGCTGTTGGAAATACCGTT 28432 29 100.0 32 ............................. TCCTTGCGCAGCTGGTCGATCGATGCGGTGTT 28493 29 100.0 32 ............................. AAAGCCGACCCGGACGGCTGGACTGCGTTCGC 28554 27 93.1 29 .....-...........-........... CGCGCCACATACATCGACCCGGCGCACCC G [28581] 28611 27 93.1 0 .....-...........-........... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 GTTTGCCCCGCACTCGCGGGGATGATCCG # Left flank : CGCGCCACAGCCGCAGTATCTCGTAAATGCTGCCACAATTGGAGGTATCGGTGGTCATCAGGGTCTCCACGGAAGACGCTTTTGGCCCAGATTGACTCGCTTCGGTCGGATAAGCCGGGATTGATTGCCATTGTGCCCCTCTCAATCACCTATGATTAGTGACTATTATTTTAACCCCTTTGTTAAATATGTCAAATCAACTCATTACACATCAATAATCCCCGCAGCTGCGGGGCGCCCTTCGAATACTATGTCAACCCTGGATCACTCCTGCTCATGCAAGACGCATCAAGTATATCAACCCAATACAAGTTACAGCAGTAAAGAAAACTGTTATTCCAAATATGAGATGCTCAGAACGACAGACGAATTATGGTTTGTGCATCTATGGGGAGGGTCGGGTAAAGTGGTTTCCAGGAGGTTACGATGATATTCATACCGAGTGTGCAAATTGAATTTTCAGGCATGCGCAGAGTATGATTTGTCAGTAAAGCCGGACT # Right flank : GACGTGCGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACTCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42-1086 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNLP01000017.1 Bifidobacterium canis strain GSD1FS Contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================== ================== 42 29 100.0 32 ............................. TGCGTTCGAGTTCGGCGAGACGTTCGGCGGTT 103 29 100.0 47 ............................. GTCGCGCATACCGCGACCTTCGATAACCGATAGCCGCAAAACGGGAG 179 29 100.0 32 ............................. CGCCACCCGGACGACGGCCCCGGTGCAGGCAA 240 29 100.0 118 ............................. TCCTGCAAATCAGGAAGGACAGTTCAATATTACGTATCAAATGAGGTGGTGCTCCTCGCCCTATTCAGAGCTCAGCTCATCACCTCATTACCTCCATCATACCTCATTTAGGTGGATT 387 29 96.6 32 ............................T GCCTCGAGCCCGTAAAGTGCGACGGTGATCGC 448 29 100.0 32 ............................. GCGGACTTGCGAGCATCGCGTGCACACGTCAA 509 29 100.0 32 ............................. GCGTTCCCGTCGAGCACCATGCTCGCCACCAA 570 29 100.0 32 ............................. GCTCGGGCACCGAATTTAAAATCAGCGACACG 631 29 96.6 32 ............................T AGGGCGATGGCTTTCAGCGAGAGTGCTTCCTC 692 29 100.0 32 ............................. CCATGCAGGGACGTAGGCAAACGGCAGACGTG 753 29 100.0 32 ............................. TCAATCCCCAACGTGACACCGAACCTCACGAA 814 29 100.0 32 ............................. ATTAGTGTATGGGGTTTTATTGGTGCTACTCA 875 29 100.0 32 ............................. ATCGGGTTGGAGCACCTTGACATACGGCTTCG 936 29 100.0 32 ............................. TTCGCGGTCGAGCATAACCGCGGCTATCTCGG 997 29 100.0 32 ............................. AACGACTACATGCCGAAACGTTCGATGAACGT 1058 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ====================================================================================================================== ================== 16 29 99.4 39 GTTTGCCCCGCACTCGCGGGGATGATCCG # Left flank : GGATGATCCGTCATCGACTTCACCATATGCCCATGCACGTGG # Right flank : TAAGCCAATGTGGCGCGGGGTGCAACTGGATGCCAAAACATGGCGGGAAGACCTACACATATACGAAGGGGAAGAGCTTAATGAACACGCTTTATCCTCCTGGAGTTCGAACCCACGTGTTAGCTACGTTGAATTCGCCAAGACATTCGACGTCGAACGTATTCGACCGGTTCTTCTCCTGAATAGGAGAGGCGGCAATCGGATGATGTCTGTCGATAGCGCTGTCGGTGATTTTATGGGAGAATATGAGTACATAAGCTCCGGGAGCAACAGATACAGGGTCATCAGCGTCAAGGACAGCATTCAACCGGCGGAGCTTCTCAACGACGATGCCTTGAAAGGATCCCCCAACGGTGACCTTGGTGGAAGTGGAGCAGATATGACTGACGAGCGTGTTATCGAATGGTACGGGGAATGGCCACACGTAAAGAAGGCCTCCGACCGAAAACCCATGCCGATCCATGTGGATACCGCGCAGATATATGACTACAAGGAGGCCT # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.49, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACTCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8608-7671 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNLP01000017.1 Bifidobacterium canis strain GSD1FS Contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 8607 34 91.7 26 .........--...........G............. TTTCTTTTCTGGAGCGTTCCCTCCGC 8547 36 97.2 27 ......................G............. AAACCGTTGACGCGCCATTCGAAACGG 8484 36 97.2 27 ......................G............. GCGTATCGTTTGATGTTTGTATGCGTC 8421 36 97.2 28 ......................G............. ACTCTTGTCGGTAGGCCCTTTACCCGGG 8357 36 97.2 28 ......................G............. TGAGCGTTGGAATGAATTCCATCGCCGG 8293 36 100.0 28 .................................... ATTCGGCGTGTCGATTTGCATATCTTAT 8229 36 100.0 27 .................................... TCGACATACGCGTACATCGATTTTTCG 8166 36 100.0 28 .................................... GATCGACATGGATATTAACAGCGCCTAT 8102 36 100.0 28 .................................... CAGCGGGAAAGCGTTCCCTCCGATGTCG 8038 36 100.0 28 .................................... ACCGGAACGGCAAATGGCTGGCCAAATC 7974 36 100.0 28 .................................... ACCAGTGCACGTTCGTTTCCGTGATCTG 7910 36 100.0 28 .................................... ATGAGGCGCGTCGTCTGGCGTCTACGTA 7846 36 100.0 28 .................................... CACGACGGCTGCAACTAATCAACATCTG 7782 36 97.2 40 ...................................T TCCCTTTCATGGGGAGCGCGGATTGAAATCAAGTCTACCA 7706 36 75.0 0 A...ATA..T.G...T..GT................ | ========== ====== ====== ====== ==================================== ======================================== ================== 15 36 96.8 29 CAAGTCTATCAAGAAGGTAAGAAGCTAATTTCCAGC # Left flank : TCCTCCGGCTCGATTCGAGTCAGACCGT # Right flank : TTACAATCCAAAACATGACTTATCATAGCAGATTTGCGACTAACCTCTTTGAGTGTCTGTGTGCATAGGAACGTGGATCAACTGTGTTGCTAACCACGGAGATATCCGTAGTAAATGAAATCGATATAAAATGTAAGAAATTATTTACTATATGAATAGTAATGCCAATGTTAAATAATGGTTTGGCAATGATAACGGGTGGCATTCAACGGAACGGCATAGAGCAGAAATAAGTATTATTCATCTGTCTTCTTATGCTGTAGCCATCGAAACAGTGAGGTAATTAGTAAGGAGGAATGGCGATGACTGAATACTATATGGGGGTTAAGCAGGTGGCAGAGCATCTTGGTATCACACCAGGTGGCTTGTTGAATCTAAAGCTTCCTGAGCCGGATGTTTGCATTGGCCGTACTCGAGGTTGGAAAACAGAGACAATCGATGCTTGGAATGCATCTCGTCCAGGACGCGGCGTTGGCGGAGGTCGGCCGAAGAAACATGCG # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTCTATCAAGAAGGTAAGAAGCTAATTTCCAGC # Alternate repeat : CAAGTCTATCAAGAAGGTAAGAGGCTAATTTCCAGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //