Array 1 2-213 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV796549.1 Corynebacterium sp. HMSC077G07 Scaffold196, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2 29 100.0 32 ............................. AAATACAAGCTGTTTACCTTCGATCTGCTGCA 63 29 100.0 32 ............................. GCGTCAATCGCATCATTCATCGGCTTACCCAG 124 29 100.0 32 ............................. CCTGATAGTCACGCCGTCCTGGGCTTCATACG 185 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 CTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : TC # Right flank : GCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 109711-110105 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV796550.1 Corynebacterium sp. HMSC077G07 Scaffold240, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109711 29 100.0 32 ............................. GTGTTCACCCCGGGCGCTGACCTGCCGCCGGC 109772 29 100.0 32 ............................. AAGCGCATCAGGTTAATGAACAGGGCGAGCTT 109833 29 100.0 32 ............................. ACAATCTGGCGGGCAAGGTTCGGCAACTGCTG 109894 29 100.0 32 ............................. AAACAAACCGGCGCAGTCGAACGCTCACTCCC 109955 29 100.0 32 ............................. GGAGTTGAAAATCTGGCCCATCTCACCCATCG 110016 29 100.0 32 ............................. AGCAATCCCAGAAGGACAAGCCGGACTCGTAT 110077 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 CTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : AGATTGAGTGGCTCTTCTCCGCACACGCGGAGGTATTTCCTGTTATTCGAGACACTGACTGCGTGGTCAAATCTCTTCTCCGCACACGCGGAGGTATTTCATGAAATTCCCGGCTCATCGGTTCTCCTCCTTCCCTCTTCTCCGCACACGCGGAGGTATTTCCTAAGCCGCCTTTTCCTTCGTGAGACGCTTTTCCTCTTCTCCGCACACGCGGAGGTATTTCCGAACGAGCCGACGTTTCCGCCCACTTAACCTCCTCTTCTCCGCACACGCGGAGGTATTTCCTGAACCCACAACGTTAAAGGGCCACGCACCCGCTCTTCTCCGCACACGCGGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTCTCCGCACACGCGGAGGTATTTCCGCTCATGCCGCAGCCGCTCCCACACCTCATCG # Right flank : CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTCTCCGCACACGCGGAGGTATTTCCGCTGAAAACCATCCTGAGAATCAGGCAACGGCCTCTTCTCCGCACACGCGGAGGTATTTCCCATGAGATGGTCTGCCACATGAGGTACTTGCCCTCTTCTCCGCACACGCGGAGGTATTTCCTTGCCCTACGCTAACCCGATTCACTGGGGTTGCTCTTCTCCGCACACGCGGAGGTATTTCCGAGGTTCTAGCGGACGCGGTTGATAAGCGGGTCTCTTCTCCGCACACGCGGAGGTATTTCCATCGGAGTCTTTCGGCGCGAGGGCTGAGTCCGCTCTTCTCCGCACACGCGGAGGTATTTCCGATTGGTGACCGTATTGGCTGTGAGGAGCCGGCTCTTCTCCGCACACGCGGAGGTATTTCCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 2 110269-110663 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV796550.1 Corynebacterium sp. HMSC077G07 Scaffold240, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 110269 29 100.0 32 ............................. CATGAGATGGTCTGCCACATGAGGTACTTGCC 110330 29 100.0 32 ............................. TTGCCCTACGCTAACCCGATTCACTGGGGTTG 110391 29 100.0 32 ............................. GAGGTTCTAGCGGACGCGGTTGATAAGCGGGT 110452 29 100.0 32 ............................. ATCGGAGTCTTTCGGCGCGAGGGCTGAGTCCG 110513 29 100.0 32 ............................. GATTGGTGACCGTATTGGCTGTGAGGAGCCGG 110574 29 100.0 32 ............................. AGAACCAATAGTGAAATACGGGGTAACACCGT 110635 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 34 CTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GGCCTCTTCTCCGCACACGCGGAGGTATTTCCAAGCGCATCAGGTTAATGAACAGGGCGAGCTTCTCTTCTCCGCACACGCGGAGGTATTTCCACAATCTGGCGGGCAAGGTTCGGCAACTGCTGCTCTTCTCCGCACACGCGGAGGTATTTCCAAACAAACCGGCGCAGTCGAACGCTCACTCCCCTCTTCTCCGCACACGCGGAGGTATTTCCGGAGTTGAAAATCTGGCCCATCTCACCCATCGCTCTTCTCCGCACACGCGGAGGTATTTCCAGCAATCCCAGAAGGACAAGCCGGACTCGTATCTCTTCTCCGCACACGCGGAGGTATTTCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTCTCCGCACACGCGGAGGTATTTCCGCTGAAAACCATCCTGAGAATCAGGCAACGGC # Right flank : CAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCGCACACGCGGAGGTATTTCCAAGGTCAAAGGCGTGTACCGTGGCAGCGCGCTCTCTTCTCCGCACACGCGGAGGTATTTCCCGAGCAAGTGGGATATAAGCCTCGCCGCCGGTCACTTCTCCGCACACGCGGAGGTAGTTCTCAGGTACCAAGCGTCAAGCGCGGCACCCACCTTGTGGCTCAGCCTCACCCCTACCGCTTCCGCAGCACCAACACCAGGTTCGACACCGCGAACTCGCGCAGCACCGGCACGTGCACCATCCACCAGGCCCACCACGGGTGGTAGCGCGGGAAAGCGGCCAGCAGCTCGCAGTCGCCGGCCTCCGCGGCAGCGCGCGCCCACTTCAATCCTTCACCGCAACCGACCTTGAACAGGGACTCGCCAAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 3 110916-110761 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV796550.1 Corynebacterium sp. HMSC077G07 Scaffold240, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 110915 33 87.9 28 A...C......................T..C.. GCGGCGAGGCTTATATCCCACTTGCTCG 110854 33 100.0 28 ................................. CGCTGCCACGGTACACGCCTTTGACCTT 110793 33 81.8 0 ...........................NNNNNN | ========== ====== ====== ====== ================================= ============================ ================== 3 33 89.9 28 GGAAATACCTCCGCGTGTGCGGAGAAGAGAGCG # Left flank : GGGCTGGAACTGCCGTTTCGCGATGACGCGTTTGACCTGACGTACTCGTCGAATGTCGCCGAGCACGTGCCCGAGCCATGGACGATGGGCGAGGAAATGCTGCGTGTAACCAAGCCGGGCGGACTGGTCGTTTACTCGTACACCATTTGGTACGGCCCGTTCGGCGGCCACGAGATGGGGATGACGCATTACCTGGGTGGCGACCGCGCGCGGCGCATGTATGAGAAGAAGCACGGCAAGCGACCAAAGAACTACTTTGGCGAGTCCCTGTTCAAGGTCGGTTGCGGTGAAGGATTGAAGTGGGCGCGCGCTGCCGCGGAGGCCGGCGACTGCGAGCTGCTGGCCGCTTTCCCGCGCTACCACCCGTGGTGGGCCTGGTGGATGGTGCACGTGCCGGTGCTGCGCGAGTTCGCGGTGTCGAACCTGGTGTTGGTGCTGCGGAAGCGGTAGGGGTGAGGCTGAGCCACAAGGTGGGTGCCGCGCTTGACGCTTGGTACCTG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGGAAATACCTCCGCGTGTGCGGAGAAGAGACGGTGTTACCCCGTATTTCACTATTGGTTCTGGAAATACCTCCGCGTGTGCGGAGAAGAGCCGGCTCCTCACAGCCAATACGGTCACCAATCGGAAATACCTCCGCGTGTGCGGAGAAGAGCGGACTCAGCCCTCGCGCCGAAAGACTCCGATGGAAATACCTCCGCGTGTGCGGAGAAGAGACCCGCTTATCAACCGCGTCCGCTAGAACCTCGGAAATACCTCCGCGTGTGCGGAGAAGAGCAACCCCAGTGAATCGGGTTAGCGTAGGGCAAGGAAATACCTCCGCGTGTGCGGAGAAGAGGGCAAGTACCTCATGTGGCAGACCATCTCATGGGAAATACCTCCGCGTGTGCGGAGAAGAGGCCGTTGC # Questionable array : NO Score: 4.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAATACCTCCGCGTGTGCGGAGAAGAGAGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.10,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //