Array 1 31284-31515 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUC010000010.1 Megasphaera stantonii strain An771 An771_contig-115_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 31284 32 100.0 36 ................................ CATAAGCATATTGGCTCTGGCTTGCATATAGGCAAA 31352 32 100.0 34 ................................ CCCACTGTCGAACCTTATTTACACAATAGCCCCC 31418 32 96.9 34 ...............................A CGAGTGACGTATGGCAGTGAGAATCCTGCGGAAG 31484 32 84.4 0 ...A.....T......G.A...A......... | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 95.3 35 GTCCCTTCTCGTACGAAGGTGTGGATTGAAAT # Left flank : ACTGGTTCCTGAACTTCCTGCACCGCTCGACGCTGACCACTTTCGCCGTCTACCGCTTTATCATCGCCGCCTTGACCGCCGTGTATTTCTTTGGGTGATATGATTTCAAGCAGCCTGTTGCTGCTTACTGTATGAAGCGGTGATTAGTTCTTTGGACATCTTTCATCCGTCTATCCGTCGTAGTAGCTTGTCAAGAACGCAGGGAATTTGGGGAAACATACCCTGATGGCGAATTAGATAGAACATAGTATGGCATAAGCAAGGATAAAAATGAACGATAGGCAGGCTTCATCTGGTATAATAAGGATAAGAATACGAATAGTGGGAAAACAAATGCAGCCTGTGCGAATCGAAAGCATGCGGCAGTTTTCCCTTGATTTCGCACTAAAATGTATGGAAATATGCTGTTTGTTGATGCGGAAAAACGGTACGCAGTGCCGTATATAGCTGCCAATACCTGCATTTGCTGAAGTAGCTTTCATGATATACTAAATGTAGCG # Right flank : TCTTGTAGACCATAAATGGTGCTGGGCGAAGCCTTGTCACTTCTCGAATAAAAACATGGTTTGAACTGCTTGATTTGTCAGATAAGGACGCCGCATTCCTTTGTGGAATATTTCTTTAGTATCAGCATGCTAGAATTTACTATCAATGGGAGACTTTGCATGGACAATAAAGACAGCACAAAGAAATTCATTGGGCATAAAAATCAAGAGACGGGAGAAGTACAGCCTTTGCCTGCTCATTTAGAGAACGTCGGAAGATTCGCCGAAGCCTTCGCCGCGGCGTTTGGCGCCGGGAAAGCTGGCCGGATAGCGGGTACTTATCATGATATTGGAAAATACGCAGAGCCGGTGCGGCGGCGTATGGAGACCGGCCAGGGGCGTCCGTACGATCATTCGACGGCCGGCGCGAAAGAATTGTATCAAGCCGGCTTATTTCCAGAGGCTGTGTGCGTAGCGGGACATCACAGCGGCCTGCTCGACGGAGGCAGCCGCGTCAGCAG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:0, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCTTCTCGTACGAAGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 37668-38031 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUC010000010.1 Megasphaera stantonii strain An771 An771_contig-115_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 37668 32 100.0 34 ................................ ATTCCATTACTGAGCCATATAATACGTCAACATC 37734 32 100.0 34 ................................ AGGACGGTCATAGACAAAAAGTGCGCCGACTGGC 37800 32 100.0 35 ................................ TGGCGTTTTGCAGTATTTGAAGTAAGATTATTGAC 37867 32 100.0 35 ................................ AGCCTCGGTTTGTGTGCAAAAGTATTCGACAGGTT 37934 32 100.0 34 ................................ TTTGCCGAAGACAACATCCAAGGCTATGATTGGC 38000 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 35 GTCATCCTCCATGCGAGGATGTGGATTGAAAT # Left flank : GCTTCTGTGGACGAGTATTATCAATATGTTTGAACACGATCATTCGGCAGCTCGCGGTAAGATGACTGTACGGGAGCTCATCGTATTTAAACACGACAGCGAATTGGGGAATGCGCCGGCTCATAAGCTGTTTGAAGCCGTTTCGGTTCAAAAAAAATCTGACGAAGCCGTTCCGCGTTCATATGATGACTATGAAGTGCGCGTACATGAAGATAAAGTGCCGGCAGGCGTAACCTGTATGCGAATGATATGAGGAGCCAGCAGATTCACTGATAGTAAAAAACGCATTCTTGCAGTGGCAAAGGAATACGTCCTAGAGAGTAAGACTGCAGCAGGTAAAAGTGCGAATGCAAAGCAGGGGCTGTTTCGCCAGTGCATTCGCACTCAAAACCTTTAATGGTGTTAAGCTTTGCGGCCATTTGTTATAGTCAGAAGCAAGCATGCTGCATAAAGATATCTATATTTGCTGTATGGAAAACTGTAGTATACTATATGTAGCG # Right flank : TTCTTCCAGCATCATACAGCCTATCTTCAGGTGGTGCCATCCTCCGTGTGAGGGTGAGGGCGCTTTGCTGATTCTTTTCACATCAAAAGCATACAAAAAGACATCCGTTTGAGTGGATTCAATAATTTATGTTAATACAGCAGATATTAGTTAGATTTTTCTGGACAGGTACAGTCAGTGTTATCCAGATATTTCACAGAGCAGGCGCTGCAGCTTATGAACTTAAAGGATTGGGCAGCGTGATTGCTGTGTATTCAGATGCACAGAATGACGAGCTGTACTCCATTCAGATTATTCAGGACAAAAGTTGAACTAGGAGAAAAAAACTGATGTTGAAAGCTATGGATTAAGTTTTGCATTCTGTAGTGCCAGAATTTTAACGAAATATGCGGTTTTTGCCAACCGGAAAAATTTAGGGTAAAATAGGGTAAACCCACTGACACGCTAGTAAGTATGTCGTATGGCAATATGTTTTCTTACAGTTATCTGCCGAGTAGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATCCTCCATGCGAGGATGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 3 38512-38841 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUC010000010.1 Megasphaera stantonii strain An771 An771_contig-115_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38512 28 100.0 33 ............................ ATAACTCGTATCTGATCTTGGAACGTATCTACC 38573 28 100.0 32 ............................ AGTTTAAGTGTTCTGGTTAACGAGCTCCGGGC 38633 28 100.0 32 ............................ GTTCTTTTGCTGACGCTTGCAACGATTCTCGG 38693 28 100.0 33 ............................ CAGCAAAGGGACATCGGAGAAGGCCCGGTCTAT 38754 28 100.0 32 ............................ GGCCTACGCATTATCCCGATCCATCCGCTTAT 38814 28 89.3 0 ............A.......C....G.. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.2 33 GTTATCTGCCGAGTAGGCAGTTTAGAAA # Left flank : GCGAGGATGTGGATTGAAATTCTTCCAGCATCATACAGCCTATCTTCAGGTGGTGCCATCCTCCGTGTGAGGGTGAGGGCGCTTTGCTGATTCTTTTCACATCAAAAGCATACAAAAAGACATCCGTTTGAGTGGATTCAATAATTTATGTTAATACAGCAGATATTAGTTAGATTTTTCTGGACAGGTACAGTCAGTGTTATCCAGATATTTCACAGAGCAGGCGCTGCAGCTTATGAACTTAAAGGATTGGGCAGCGTGATTGCTGTGTATTCAGATGCACAGAATGACGAGCTGTACTCCATTCAGATTATTCAGGACAAAAGTTGAACTAGGAGAAAAAAACTGATGTTGAAAGCTATGGATTAAGTTTTGCATTCTGTAGTGCCAGAATTTTAACGAAATATGCGGTTTTTGCCAACCGGAAAAATTTAGGGTAAAATAGGGTAAACCCACTGACACGCTAGTAAGTATGTCGTATGGCAATATGTTTTCTTACA # Right flank : ATATTGCAGCCAAGGAAATGCTGATGTAAAGTTGTCGTCTGCCGTCTGTCGTACTGGTGAGCTGGGCTGTTGTGCTTTTGTGTGCTCCTATATACTTTTGAATCCTATGGTAATTACAGGTCTGGCTCATAATTTTCCGCCAAAAATCTTTACACTTCTTCTGCCATATAGTATAATAGTCATTGTCGTACGGGCGCTCAGTGAATCGAAGACTCCGACGTTCACTTAGCGGTTTGCGAATAGATTATAGTCACAAATGGAGGAAGACAGATGTTAACAGTTGATCAGAAAAAAGAAATCATTGCTAAATTTGGCGCTAACGAAAACGATACGGGTTCGCCGGAAGTACAGATCGCGCTGCTCACGAGCCGCATCGTGTATTTGACGGAACATCTCCGCAGCCACAAAAAGGACCATGCGTCCCGCCGCGGCTTGCTGAAATTGGTCGGCCAGCGCCGCAACTTGCTGGCATACTTGCAGAAACACGACCTCGAACGGTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCTGCCGAGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTATCCGCCGAGTAGGCGGTTTAGAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 39892-38122 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUC010000014.1 Megasphaera stantonii strain An771 An771_contig-115_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 39891 28 100.0 31 ............................ CCGGCAAGGCATTCAAGCTTGCCAAATATTC 39832 28 100.0 32 ............................ ATCATCTTGTCCTCAATGCGACGCATGGTATC 39772 28 100.0 32 ............................ ACCAGCGAAATCTTCATTGACCGCAGCTGACA 39712 28 100.0 32 ............................ GATTTTATCGGCCAACTCCGGAGCGTCCACGC 39652 28 100.0 33 ............................ AACTTACAGGATTGGAATATCCGTGCGCTTTTT 39591 28 100.0 32 ............................ AAAAGGCGTCGTCTACGTGTACAGCTTTGTAC 39531 28 100.0 32 ............................ AACAAGTGTTACGACAGGGCAAAAGGGGCTGT 39471 28 100.0 32 ............................ TCCCGGGTGACACGATTGATATGCGTGCTAAT 39411 28 100.0 32 ............................ TTTAAATTCATGATTTTCAAGCACCTTTCTAG 39351 28 100.0 32 ............................ CATGTTCTAGCCCGTAGATTCGGGCGTTTCCA 39291 28 100.0 32 ............................ ATAAAGACATGCGTTTTCAAAAACTTTTGTAT 39231 28 100.0 32 ............................ TTCATACATCATCATTCACCTTCTTTTCCGTC 39171 28 100.0 32 ............................ TGACCAAGATTGTGGGAGTGCCTTTTATTGTT 39111 28 100.0 32 ............................ AGAAAGCCGATACGGTCGATGTCACGATACAA 39051 28 100.0 32 ............................ ACATTCCCGTATTCGTCGTGAATGCAATATAC 38991 28 100.0 32 ............................ GTTCGCCAGCTTTACGAGACACAGCAGCTCTC 38931 28 100.0 33 ............................ ATAGTCTGCAAGTTTGCTCTGGTACTGTTGGCT 38870 28 100.0 32 ............................ TTGTTGGCATAAAGAAGTAGGGCCGCTGACAC 38810 28 100.0 32 ............................ TTGCAAGACGACGATGTTGTATACAAACTGTT 38750 28 100.0 33 ............................ AAAAATTAAGAAGGGCATGCAAGTATGTCGACA 38689 28 100.0 32 ............................ ACGTCATGCAAGAGATTTCATCGCAATAACTC 38629 28 100.0 32 ............................ TTAAATCGGCAAATTCGTGGTACTGAATCATG 38569 28 100.0 32 ............................ GTTGCAATCAGAAAAAACGGCCACTGGTTCAA 38509 28 100.0 32 ............................ AGGGACACTATACACGGGCATCGGACGGGTGC 38449 28 100.0 32 ............................ ATCCGCTTTTTGCATTGTGGCGAGTATGGCGC 38389 28 100.0 32 ............................ GACTCGAGGATAATGCCGGACGGATCGTCTTT 38329 28 100.0 32 ............................ AGCAAAAAAAAGCGTTGGTATTGGAGGCCGGA 38269 28 100.0 32 ............................ GATGGAACGATCCGTAAAAAGGAATACACCTA 38209 28 100.0 32 ............................ AACCATCCAAATTTCCACGCTCTTAGTATAGC 38149 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 100.0 32 GTTATCTGCCGCATAGGCAGTTTAGAAA # Left flank : TGGAAATGTTGAATATAAAGGGTGTATTGCGGCGTTTTGCTGATTATGCTGATATTGGAAAGATAAAGAAAATACCATATAAAAAGATAAAAGGCTATGCTGTGTACAGCCGATATCAGCCAGACAGCTCCGTCCATCAAAAAGCAAGACGGTACAGCCAGCGCCATCCTGATACTTCCTATGAACAGGCTCTCCGGATTATGAAATCAAAGAATCGGGCGACACCGCTGCCGTATATTCAGATGTGCAGCATGACGAACCGCAATCCATTCCGATTGTTCATTAAACGGACGAAAGCTGAACCAGGAGAGAAAAATCATTTTGGCAGTTATGGATTAAGTCCTCATTCCGCAGTACCTGAATTTTAACCAAAATAAAATGAGCAAAGGAAAACCCTTGGAAATATGCGGACTTTTGCTATCTGGAAAAATTTAGGGTAAAATAAGGAAAACATACTGCCGTGCCAGTACGTATGCCGTATGGCAGTATGTTTTCTTACA # Right flank : ATTGAAGTTGTGTAAAAAGTGGGCGAAACGAATCATTCGGCTGCGTACATTGGAAGAAAATGGCGGTAGTATCGGATTATGTGCATGATGCCGATCAAAACTGCCGAAGGACGGGAAGCAAAAGGATACTGCGACGTCCTCATCAAATAAATATCATCCACCACTTGATACTGTCGGGAATGTATAGGGGAATGACTCTTTTCATTTTCTATGACAAAATGAAGCCGTTCGTACAACCATCCGCATATTGACAGGCTCTAGGGGGCATGCTATAGTTAATTAAAATCTATTTATATGCAGGTCAGGTGTCGCAGACTTAATAGAGAAGTCCGGTGAAACTCCGGCGCGGTCCCGCCGCTGTAACGAGGAGCGATGCTGCAATATGTCACTGTACCTCATTGGGTATGGGAAGGCGCAGCGGAGCGATGAATCTGAGCCAGAAGAACTGCCTGACTGATAATCACCGATAGACCTGCGAGCGATGGGAATGGAGATTCAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCTGCCGCATAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTTTCTGCCGCATAGGCAGCTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 49363-48736 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUC010000014.1 Megasphaera stantonii strain An771 An771_contig-115_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 49362 32 100.0 32 ................................ GGCTTTACGCCGGAAGACGCTCAGTTCCTGGA 49298 32 100.0 34 ................................ TGTCTCAAACAAGGCGTATGCTGCACGAGGGTCA 49232 32 100.0 35 ................................ CTTAAATGCCGGATTATCGAAGAAAAGCCAGCATT 49165 32 100.0 35 ................................ TTTTTTGCTGTGCCGAATGGCTGACTCACTCCGCA 49098 32 100.0 35 ................................ TTGAACGTAAATTCGATGTTGCGCCCCACTAAGAC 49031 32 100.0 34 ................................ ACAAGTTTAATCTGTGCAATGCGGTCGCCGTCGT 48965 32 96.9 34 .............T.................. GATTTCGTCTTTCAGAAAGCGGATACCACGTTCC 48899 32 96.9 34 .....................C.......... TTCCTGCGGGCTGTCAAACGGATTGGCCGTTACA 48833 32 93.8 34 .................A...C.......... GTCGCGCTGTGCATGACGACTGCTGTCAGGTTTC 48767 32 87.5 0 ............A..G.A...C.......... | ========== ====== ====== ====== ================================ =================================== ================== 10 32 97.5 34 GTCACTTCTCGTGCGAGGGTGTGGATTGAAAT # Left flank : TAATTTCTGCGTCGACGCCGTTTTCCTTCAGGACATCGGCGACGACGGATAAGGCTGTATACGTGCAGCCAGCTTCACGGCGGCTGCCGTTTAATAACACAACTTTCATGAAATATACCTCCTCTATACTGTACAATACAGGTGTTTAATTTGAACTATAGCACGGAAAGGACAAAATGTCAAATTTGTTTTGCCGAGACGCAGGAAGGTGTGGGAGTATAAAAAATGTCGAGTTTAGCGAGATGTGGGACAATGTTGATCATAATGAGATGAACGGTAGAGATTTCATCTGGTATACTAAAGAAAACCATACGGATAGGGGAAAATATCATAAGGCAGCTTGTGCGAACCAGAAGTATGCGGCATTTTCCCTTTGATTCCGCACTGACATATATGGAAAGATGCTGTTTGGTGATGCGAAAAAGTGGTATAAATTACTAAATATAATTATTAATGCCTATATTTGCTGAGGTTGTTTTTGTAGTATACTATATGTAGCA # Right flank : GTTTAAACACTGACAATACTAGGTTTATTCAATATGAATTCTGCAAGCATTTTGACCAGTCAAGAAGCCCCGCAACATGTTTCGTAATTGAGAGGCTTCTTGACGAATAACAGTACTAATAAATAAAATAGCAACACCTTGCCTTAAAGAATATCTTTACAAAGGATGAGATGCCCTATGAAACAGAACCTAACATCTTCCGATTTAAAACCGATTCTTCATTCCAAGCGATCTAATATTTTCTATTTGGAAAAATGCCGTGTTATGCAGAAGAACGGCCGTATTGTGTATTTGACAGAGACGGAAAAGGAAAATTTGTACTGGAACATCCCGATTGCCAATACGACGGTAATTTTATTGGGAACAGGTACGTCTATTACGCAGGCGGCTATGCGGTTATTGGCCAGTGCCGGCGTTCTGGTTGGGTTCTGTGGAGGAGGCAGTACGCCTTTGTTTGCCGGTTCGGAAATAGAATGGCTGAATCCGCAGAGCGAATACAG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCTCGTGCGAGGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 54099-53065 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUC010000001.1 Megasphaera stantonii strain An771 An771_contig-115_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 54098 32 100.0 35 ................................ CATTTCCTCGACGTGCTTGCGTTTCCGGTCTGCAA 54031 32 100.0 34 ................................ TTAGGATCCTGCACAAATCCAAGGAATTTAGACG 53965 32 100.0 34 ................................ CGCTACGAATGCTCAGGTTGGTACTCTCTGGGAT 53899 32 100.0 34 ................................ ATCCTGGACAGCAGAAATACGCTGGATCCCTTGA 53833 32 100.0 35 ................................ TTTATCAGCGTCAAAATCACCAAGACAATACAAAT 53766 32 100.0 35 ................................ CGTGCGTACGTCAAAGTCTGGAATGATTGGTTCCG 53699 32 100.0 35 ................................ ATCAAGGCGACAGCCGATACACTTACCGCACGGGA 53632 32 100.0 35 ................................ CAGTAGGCTCTAAAGGGGAACGCATTTACCTCGAT 53565 32 100.0 34 ................................ AACGACTAGTTTAACTGGGAGTGTGAATAGTACA 53499 32 100.0 35 ................................ CAGGAGCGCATGAGTAATACGGCTCATCAGCGCGA 53432 32 100.0 35 ................................ CCTTTCGGGCCTACTGGAAAGTTTACAATGATTGG 53365 32 100.0 36 ................................ ATGCTGATCGGAGTGCTGCAGCCGCCCAGATATTCC 53297 32 100.0 35 ................................ AAAGGGGGAGTGTATAGTTACCGACCGCCTGTCAA 53230 32 100.0 35 ................................ TGTTGTCTAAAGATATGACATTAGAGCAAGTGCAG 53163 32 100.0 35 ................................ AAAAATAACTTGGAACATGCCAATGGGAACTTTGT 53096 32 87.5 0 ....C.....AC......G............. | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 99.2 35 GTCATCCTCCGTGTGAGGATGTGGATTGAAAT # Left flank : TGAATCGCAAGGTAATCGGCTGTATATCCAGGTCGCCTACTTGTTGGCGTCAGAGGAAACGATTCAACGAGAATTTGGCGTTTATGAGCGAGTTCGGGACAATTACCCTAAGTACGTTCTTACGTTGGACGAGTTTGACATGAGTCGGGACGGCATCAATCACCGAAATATTCGCGATTTCCTACTGGAAAAAGAGTGGAGATAGACGTTGTCTGAGCTATCTGTTTACTGGATTAGATATCCTCTTTTATGTTCCATTAGGGATATGGTATCGGAAACAATCCTCGGAAAATCGTATAATTCAGTTAGTGAATACGATTATATACTTTAATACATGGGTAAGTGCGAATTGCAAGTATCGGATATATTGAGGAGAGATTCGCACTCAAACAAGTAATATGTTGTCGAAATAGACAGCGATTTTCAGCAAATCAGCTGGATAAAGTTGCATCAAGTTCTATATATGCTGTATTTCGGAATAAGATATACCAAATGCAGCG # Right flank : CAGCTAACTGCAGTAGCAATATCCGTTTTCGACGTGTCGCCCTTCGTGCGAAGACTGTTCCTGTATTTTTGTATGTACCATGACTGCGGCTTGTATATTTTATAATATGCCCTTATATACTTATTACGTATATAAGGGAATATATGCTATTGGGTCAGGAAAATATTTCCTGTATAAATACAAAAAAAGCCTATGGTAATAAGGGAAAGTATGGTATTATTAAAATCATACAAATGTATTTATAGGAGGGATTTTTTATGGAATTGCTTAGGAATTGGAAGGTGCACCTATTTGCGTTCATTATCATCATTATTGCTGAGCTGATAGGTGTTCATTCTTTCGGTCTCGTCGTATTTTTACCGCTGCTGTATGCCTTGGTAATGGGCGGCATCCTCAGTTATCCGTCTCTTGGAGTCATGAATGAAAAAATGATGGATGTAGCCGGCAAGGTCATGCCGATTGCCATGCTGGTGCTGATCGTAAAGATCGGTCTCGGCATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATCCTCCGTGTGAGGATGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.00,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 2 57684-55788 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUC010000001.1 Megasphaera stantonii strain An771 An771_contig-115_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 57683 32 100.0 34 ................................ GTGCTGATACTAGTCGTAAAGTGTCTGAAACGCA 57617 32 100.0 35 ................................ TCTGTAACACCACGAATATAATTTAACTGCGTTTC 57550 32 100.0 34 ................................ GTACGTATTACGAGCATGCTGAGTCTGAAGGATA 57484 32 100.0 34 ................................ GTGAAGACTATAAGGCCAAGTTGAAAGCACAGGG 57418 32 100.0 34 ................................ AAAAAATCACGCATCATAAATATCGCTTAAACAT 57352 32 100.0 35 ................................ AAATACTGCAAAACACCGGAACCCAACGCGCCAAT 57285 32 100.0 34 ................................ TTGGCCGCCCGGCGGATAAGCTTCGGCGCCAGCT 57219 32 100.0 35 ................................ CAAGGACTGGGCCTCCTATACCTTATGTGAAGCAA 57152 32 100.0 34 ................................ CGGACACCTTTGCCGTCGAGGGCATTGAAGCGAA 57086 32 100.0 35 ................................ CGTACCATAGCATGAGCCGTCAGCACGACGTTCAT 57019 32 100.0 34 ................................ GTTGCGCCGCGTTGAGTGTCTGCAAGCCATTGTA 56953 32 100.0 33 ................................ TCATGAACACTGGTCAGCGTCTAAAAGCTTTAC 56888 32 100.0 35 ................................ GTAAAAAGCGTTGTACTGATCTTCGTTGTACTGCC 56821 32 100.0 35 ................................ CAATGTATGCATCGGCGAATCCAAAGTTACCGCCA 56754 32 100.0 36 ................................ TTATCTTGAGAGTGGTCGTCTGCTTAACAATGCACA 56686 32 100.0 34 ................................ AGGATGTGATATTGTGCCATGTTATCATCCGGTT 56620 32 100.0 35 ................................ AGATTATCCATTACCCCTGTCACTCATTGGGCTGA 56553 32 100.0 34 ................................ AATCTGCGCTGCAAGTACGGCATCAAGCTTTAGA 56487 32 100.0 34 ................................ GTTCTTGATTCAAGGGCACAATAGACTTAGATAC 56421 32 100.0 35 ................................ ATAAAAAAAATAGCTTTATTACATTGACGTATGCC 56354 32 100.0 34 ................................ TGATTTTATTGAGGATACTGCAAGTTATCAAGGG 56288 32 100.0 35 ................................ ACCTCACAAAGTATCTAAAACCGAAACCACAATAC 56221 32 100.0 35 ................................ ATCTATATAAAATGGAACAAGAGTACCAGCATCAA 56154 32 100.0 35 ................................ AATCTGCGCTGCAAGTACTATATCAAGCTTTAGAC 56087 32 100.0 34 ................................ CGATTGAAATAGGTCGGCGTATAAGGAGTTACCG 56021 32 100.0 35 ................................ GCTTCGCGGTCGTCCGTCGCTGTTTCACGGTCTAC 55954 32 96.9 35 ...A............................ AGCATCTGCAGCAGGATGTAAAAGTCGGCGCTATG 55887 32 96.9 36 ...A............................ TTCGGGGATCCAATACATTTGCTTGACGTATATTGT 55819 32 90.6 0 ...A.........T.................A | ========== ====== ====== ====== ================================ ==================================== ================== 29 32 99.5 35 GTCGCCCTCAGTGCGAGGGTGTGGATTGAAAT # Left flank : AGCAGGAAGCGAGGTGGCAGACGAAATGTATATTTTAGTTTCGTACGATATCAGTACAAATTCAGCGGCAGGAAAACGCCGTCTGCGGACGGCTGCTAAAATCTGTTTAAACTATGGGCAGCGCGTTCAGAACTCTGTATTTGAGTGCGAAGTAGACGAAGGACAATATTTGCAGCTGAAACACCAATTACATGAGGTGATTGACGAATCTGTCGATAATTTGCGTTTCTATCGCCTCGGGAAACACTATAAAAAGACCGTAGAATCCATCGGCGTCGACAAACGATATGACATAGAAGGCCCGTTGATTCTGTAGCGGCTTTCCGGCAATGGAAATAGGCTGTGCGAATCATAAGCATCGGATATATACCAGGGAGATTCGCACTCAAAAGAGCAATAGTTTGTCGAAATAGACAGCGATTTTCAGCAAATCAGCTGAATAGAGTTGTATAGGATTCTATATATGCTATGTTTAGGAGTAAGAGATACCAAATGTAGCG # Right flank : CTTCATATTATATTTTTTGATAAAATTACGGTAATAAAAAAATCGTAATTTCTATTATCTGCTATCTTTTATGAAGCTTGTGTTTTTATCCAGTATAACCGTTAAAATAACACAAATAAATTGAATATCAGATATATCTGTGTTATTATGATTTTATTGCTGGAGGGGAGGGAAAAGACATGATTAAGCGGGAAGCGTACATGAGCCGTATTCGGCCGTTTATTGGAAGCGATTTGGTCAAAGTACTAACGGGTATTCGGCGCTGTGGAAAGTCTGTTATGCTGGAACTGATTCAGGAGGAGATAATGGCGTCTGGTGTAGATCCTTCTCAGTTTATATCTATTAACTTTGAAAATATGAGCAATGCCAGTCTTTGTACTGCTCAGGCCCTTCATGATGAAATCATCTGCAGGGCGGCGCAGATTTCAGGAAAGGTGTATCTCTTTTTTGATGAAATCCAAGAGGTACAGGATTGGGAAACATGTATCAATTCCTTCCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCAGTGCGAGGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA // Array 3 67698-66269 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUC010000001.1 Megasphaera stantonii strain An771 An771_contig-115_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 67697 32 100.0 35 ................................ CTTTAAACGCGTATCAGCTCGCATATTAGCTGTAA 67630 32 100.0 34 ................................ ATAAAATTTTTGCAACTGGAACGCCGAACGCAAA 67564 32 100.0 35 ................................ ATAAAACTTTTGAAGCTGGAACGCCGAACGTAGCG 67497 32 100.0 34 ................................ AATAATACCGCGTGTGAATGTTCCTCGGTCGAGT 67431 32 100.0 35 ................................ GACGTCTCCGCAGGGTAATTTGGCTGCCTTTGCTC 67364 32 100.0 35 ................................ TGTAACTGAAAAGCCGTACGAAGAGAATTAATGGT 67297 32 100.0 34 ................................ CGCATATATGTTCGCTTTTGGTAAGTGACAGTTC 67231 32 96.9 34 ...........T.................... CCGACCGCGGCGACAAGGTGTCCTATGACTTGCC 67165 32 100.0 35 ................................ TGATTTTTACTGACATATGGCACTCCTTTGTGTTA 67098 32 100.0 34 ................................ TTTGCAAAAGACCAGATCAATTTAATACCGCCGT 67032 32 100.0 34 ................................ TGGATAGCTACACCATTGTTATTGAGTTGAATAG 66966 32 100.0 35 ................................ TTGAGTTTAGGCCACAACCGGTGCAACAGCCACAG 66899 32 100.0 34 ................................ TTTCGTTGTTTCGGTTTCGTAACTCATGTAATTC 66833 32 100.0 35 ................................ ATAGTGCCCTCGTTCATCTGGCCGATGACTTGCCG 66766 32 100.0 34 ................................ ATACGTTTTAATCGTCAGAACTCTGCCGGCTGGC 66700 32 100.0 36 ................................ CGCTAGGTTTTACTGCTCCTGAACAAAAAAATCCCC 66632 32 100.0 36 ................................ GGCCTGGGCCTGTACGACTTTGCGGTACACGTCGGG 66564 32 96.9 34 ......................A......... AAGAAGGCCTTGACTGGGATGCGGTTGTAGCCGC 66498 32 100.0 34 ................................ CTCATCGAGCCAGTCTTGACGCTGTTTGAGGTAA 66432 32 96.9 34 ..........G..................... GATGTGGATATTTTGCAAGGTAAAATATCGAAAG 66366 32 96.9 34 ..........G..................... TCCCACATCAGCAGCCCGATGACGACCAGAAGGG 66300 32 96.9 0 .........C...................... | ========== ====== ====== ====== ================================ ==================================== ================== 22 32 99.3 35 GTCACCCTCTACGTGAGGGTGTGGATTGAAAT # Left flank : CGGCTGTATATCCAGGTTGCCTACTTGTTGGCGTCAGAGGAAACGATTCAACGAGAATTTGGCGTTTATGAGCGAGTTCGGGATAATTACCCTAAGTACGTTCTTACGCTGGATGAGTTTGACATGAGCCGAGACGGCATCAAACACCAAAATATCCGCGATTTCCTGCTGGAAAAAGAGTGGAGATGACCTAGCGTCTGAGGAGTTTGTTTGCTGAGGGGATTTGCCCCTTTCATGCCCCTTTAGGGGTATTATATTGGGAAAAATTCTTGTAAAAATCGCATAGCTAAGCCAATGTTATAGAATTGTATATTCTAATGAATGGTACTAGACGATGAACAGGTGCGAATGGAAAGCATCAGATAGATACCAGGGAGATTCGCACTCAAACAAGTAATATATTGTCAAAATAGACAGCGATTTTCAGCAAATCAGCTGGATAAAGTCGTGTCAGATTCTATATATGCTGCGTTTCGGAGTAATATATACCAAATGTAGCT # Right flank : CATACGACAGCATTAGATGTATTGTCAGTTTTGTCAGTTCAAGGCTAGCAAAATATTATACATAATGAATCAAAATACTATATGTAGATATTTTTTATTAGGTATCTATCTTGAAGGTATGGTATAATCAATGACATAGAAGTGAAACGGAATATATAGGTATAGCTAATTATTTTTTAGGATCGGGACGCTATGGATATCGAATGGGATTTGCTGCTGGCGCATTGGGATGCAGAACTGAAAAAAGGGCAGTATATCAAAGACCATGTGAGGAATACGGCTGAGTATATGGCTCGTATAGGTAAGTCTCTTGGGCTGGAATCTATCTGTATTCTTATCGGCCTTCTTCATGACGCAGGAAAGGTGAATCGTGATTGGCAGAAATATATCCGCGGCGAAGCGGCGTCGGGCGGGGATCACGCTGGCGTCGGAGCTTGGTATGTCCAGCATGTGTTGTATAAATATGTAAATAATTCCGTACCTGCCGATACGTATCGATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCCTCTACGTGAGGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA //