Array 1 162297-161657 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTPX01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain V55 isolate V55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162296 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162235 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162174 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 162113 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162052 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161991 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 161930 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 161869 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161808 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161747 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161686 29 96.6 0 A............................ | A [161659] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179895-178429 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTPX01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain V55 isolate V55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================== ================== 179894 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 179833 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 179772 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 179711 29 100.0 67 ............................. NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 179615 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 179554 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 179493 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 179432 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 179371 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 179310 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 179249 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 179188 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGACC 179127 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179066 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179005 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 178944 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 178883 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 178822 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 178761 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 178700 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 178639 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 178578 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178517 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178456 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= =================================================================== ================== 24 29 98.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //