Array 1 289588-290192 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MJCJ01000007.1 Listeria monocytogenes strain CFSAN002295 PROKKA_contig000007, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
    289588	    29	  96.6	    34	..............T..............	GAGGAAGCCGCAGCGATTGCAGCTCATATCGATC   	
    289651	    29	 100.0	    35	.............................	ATTGTATTTCGGTTTCCGTATCCGTTTCCGCCATC  	
    289715	    29	 100.0	    34	.............................	CAAGAAGAACGATATGTTCCTGAAGAGGATTTTG   	
    289778	    29	 100.0	    37	.............................	AAATGGCATGCGTTAAGACAATCCCATTCTGCATCAT	
    289844	    29	 100.0	    34	.............................	TAAACTACAGATTCAAAACCATCATTTTCATGTA   	
    289907	    29	 100.0	    36	.............................	CAAGAAGCAGCAGCAATTGCAGCTCATATTGATCCC 	
    289972	    29	 100.0	    34	.............................	GCAATACTGAAAGCTTGGCACGGAAATCCTCCTG   	
    290035	    29	 100.0	    36	.............................	TCGACATAACACATATATTTAAAATCATTAAAACTA 	
    290100	    29	  96.6	    35	..............T..............	GTTTTAGCCCGTGCTGTAAAAAACTGACTATCAGT  	
    290164	    29	  75.9	     0	A.....A.......TCA.A....A.....	|                                    	
==========	======	======	======	=============================	=====================================	==================
        10	    29	  96.9	    35	GTTTTAGTTACTTAATGTGAAATGTAAAT	                                     	       

# Left flank :   GCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTGATCTGTCGACCTTGAGTAGCGTGAAAAATACCGGAGACCGACAGAAAATTGTAAGTGGCTGGGGGAAGGGAAGCTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG
# Right flank :  TCTCCTCCATACACAACTCCACCACCATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACT

# Questionable array : NO	 Score: 6.11
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTAATGTGAAATGTAAAT
# Alternate repeat :   GTTTTAGTTACTTATTGTGAAATGTAAAT

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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