Array 1 777-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECSQ010000477.1 Pseudomonas aeruginosa strain CCBH27919 NODE_478_length_801_cov_17.855228, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 776 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 716 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 656 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 596 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 536 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 476 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 416 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 356 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 296 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 236 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 175 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 115 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 55 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CCAAGCGTGCGTATCGCGGCCATC # Right flank : ATGGAGAGTGACCCGCTCAAGACCGAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [16.7-13.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 110-1037 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECSQ010000304.1 Pseudomonas aeruginosa strain CCBH27919 NODE_303_length_4901_cov_11.630623, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 110 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 170 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 230 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 290 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 350 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 410 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 470 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 530 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 590 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 650 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 710 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 770 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 830 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 890 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 950 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 1010 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 415-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECSQ010000529.1 Pseudomonas aeruginosa strain CCBH27919 NODE_530_length_523_cov_14.423077, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 414 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 354 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 294 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 234 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 174 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 114 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 54 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : ATGATCACCCAAGCGTGCGTATCGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9809-8404 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECSQ010000166.1 Pseudomonas aeruginosa strain CCBH27919 NODE_165_length_13621_cov_9.632758, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9808 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 9748 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 9688 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 9628 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 9568 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 9508 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 9448 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 9388 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 9328 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 9267 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 9207 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 9147 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 9087 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 9027 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 8967 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 8907 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 8851 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 8791 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 8731 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 8671 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 8611 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 8551 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 8491 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 8431 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //