Array 1 786-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTN01000051.1 Salmonella enterica subsp. enterica serovar Weslaco strain 27 NODE_51_length_14589_cov_0.962177, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 785 29 100.0 32 ............................. CGCTGGATATCGCCCCTGCGATTGCCTCGGGT 724 29 100.0 32 ............................. CTAAACCAGTTGCTCCATTCTGGTGCCTGGCC 663 29 100.0 32 ............................. CGTTCCATCCGCCATTCAAACACCATCTGGTA 602 29 100.0 32 ............................. CGTTGGGATATCTCAACAGCTGAATCATAGAG 541 29 100.0 32 ............................. TCCATGACCTTTATTAACCACCTCTCCATGAT 480 29 100.0 32 ............................. GACTGTCGCTTCACATGCTGGAGTCGCTGTGT 419 29 100.0 32 ............................. CCCAGCAGAACGCCTTCCTTTAATCAAAAACA 358 29 96.6 32 ............................T ACCGGCAACAAAACCACAAAACCGCCAAATAC 297 29 96.6 32 ............................T ACCGGCAACAAAACCACAAAACCGCCAAATAC 236 29 100.0 32 ............................. TTGAAGAAAAGGCAGACCGTGATGGTCTGTGG 175 29 100.0 32 ............................. CGTAATGGTTTCCGGTTCTGGGGCGACCGCTC 114 29 100.0 32 ............................. GTTGTCGGGAGTTCTTGGGCCACTGCGGGGGA 53 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGATTTCCGTTCTGACAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTATCGTTTTTACCTGTTTAAAATCAATAAGTTAGAGATCTTTAAAAATCAGGAAAAGTTGGTAGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGATAGATTTAGA # Right flank : GCATCCTGAATCATCGTGTCTCCCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 168-683 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTN01000537.1 Salmonella enterica subsp. enterica serovar Weslaco strain 27 NODE_537_length_1943_cov_0.919604, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 168 29 100.0 32 ............................. AACCACGCTGCACTACGGGCAGCATACGTATC 229 29 100.0 32 ............................. CAGGTATTCGAGGTTTATCCAGGCAATTCTAT 290 29 100.0 32 ............................. GGTGAGAAAATCGGCGTCGGTGTGACCGGTAC 351 29 100.0 32 ............................. CGAATGCAGATGCCTCCCGTACTGCCGCCGGC 412 29 96.6 32 ............................C GAATCACCCAGCGTGAGGCTCTCGATTTGGGC 473 29 100.0 32 ............................. CCGAATAACAAATAGGATAAGGCCGACAATTA 534 29 100.0 32 ............................. TTTTTGGGCTTGCTTGCTACATAATATGTCTA 595 29 100.0 32 ............................. CGATCGACGCGGTTCCATCCGTAAAAACTAAT 656 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTGTTCCCCGCACCAGCGGGGATAAACCG # Left flank : GCACGGATCACGCTATTTTGGTAAATTTAAATAAAAAATCATTCTATTAACTTTTTTCATTAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTTATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTGGTTTATAAACAAAGATATACGTTTAGTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGTTGCAACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAACGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTCGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCTCTGATGGCAGTTTTATGCAAAACACGTCGGCGAGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTCGCATGGTCATTACGATCATTGCGACGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCTGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGAACTATTCATGCTACCGAATGATGTACACGCGTGGCCCCCTACCTACCGATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13747-13473 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTN01000066.1 Salmonella enterica subsp. enterica serovar Weslaco strain 27 NODE_66_length_13751_cov_0.849163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13746 29 100.0 32 ............................. CATCCTGAATCATCGTGTCTCCCCTTCATGCC 13685 29 100.0 32 ............................. GCCTGCCGGACCAGTACGACGGTGGTCGTGAA 13624 29 96.6 32 .............T............... ACGGCACCATCAGGCGAAAAGTGGTCTGAATG 13563 29 93.1 32 ................T...A........ ACGAACTGACAGTTGAACAGTGCCAGGTATTA 13502 29 93.1 0 ...........AT................ | A [13475] ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATACTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACAGAAAGTACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //