Array 1 3209-2448 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLJD01000004.1 Escherichia coli strain MOD1-EC5656 MOD1-EC5656_4_length_297542_cov_54.223, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3208 29 100.0 32 ............................. CTCTGTTGCCTTCACGGCATCGCGCAACCCTG 3147 29 100.0 32 ............................. CAAAACTGGTTTATCTCCCGCGTAGTCCGCCC 3086 29 100.0 32 ............................. TTAGCCCGGCCAGTAGATTTTGCTCGCTGCGC 3025 29 100.0 32 ............................. GCGCAGGTTATCCGCTCTGTGCTCATTGACGT 2964 29 100.0 32 ............................. GGACAACATCGTAGGGGAGTTATAACGTTCAA 2903 29 100.0 32 ............................. TCGTCAATCCTATGCCTGCTCATGAGCATTAT 2842 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 2781 29 100.0 32 ............................. GGCGAATACAAACGCTGGCGCAACGAGTCCTA 2720 29 100.0 32 ............................. ACGCCAGCGGTGGCGTTACTGAAATCCTCGGT 2659 29 100.0 32 ............................. CCGCCGGTTACTGCCCCGGCGTTCACTGCCGA 2598 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 2537 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 2476 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14643-16318 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLJD01000015.1 Escherichia coli strain MOD1-EC5656 MOD1-EC5656_15_length_111184_cov_52.6323, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14643 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 14704 29 100.0 32 ............................. ACGCGGGGTAAGTTGGCGCGGTCCTGGTGTGT 14765 29 100.0 32 ............................. GAAATATAGCGTTAAATAGTCAGGTGACAGAA 14826 29 100.0 32 ............................. CCCCGCGCCGCGCATCGGGTACGTGTAGTCAT 14887 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 14948 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 15009 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 15070 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 15131 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 15192 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 15253 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 15314 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 15375 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 15436 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 15497 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 15558 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 15619 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 15680 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 15741 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 15802 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 15863 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 15924 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 15985 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 16046 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 16107 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 16168 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 16229 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 16290 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //