Array 1 89790-91506 **** Predicted by CRISPRDetect 2.4 *** >NZ_REFA01000002.1 Amniculibacterium aquaticum strain KYPW7 contig02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 89790 46 100.0 30 .............................................. TAGAGAAAAGTCTAGTGAAAGAAGGGAAAT 89866 46 100.0 30 .............................................. AAAAACCAACAAGCCTACTAAGGCACTTGA 89942 46 100.0 30 .............................................. TGGAAACACGGTATTAATCCAAATTCCTCT 90018 46 100.0 30 .............................................. TGAAGCAGGTTATTGATTTTCAAAGTAAGT 90094 46 100.0 30 .............................................. GAATGAATTAACATGTTCTAATGCTTCATT 90170 46 100.0 30 .............................................. AGCGGTTTAAACTCGAAGGAGTTAGCAAAA 90246 46 100.0 30 .............................................. CTGCAATGATTTTACAGTGAAGAGAATAAA 90322 46 100.0 30 .............................................. AAATATTAAAAAAATAAAATAATGGAAAAT 90398 46 100.0 30 .............................................. TCTTTCTTCTGCCGGAATAATATTTTGTAA 90474 46 100.0 30 .............................................. TTTGTGAGTATTCGCACCAATAAAGCCAAT 90550 46 100.0 30 .............................................. TTTTGCTTCAAAATTTACCGTGTAACTTTG 90626 46 100.0 30 .............................................. AACAGAGGAAAAATTATCAGTATATGTATT 90702 46 100.0 30 .............................................. TATAACGATCTGATTATGAATGATAAAATT 90778 46 100.0 30 .............................................. GACAGATGGAGTATTAAACCCTTATTTGTT 90854 46 100.0 30 .............................................. ATTATGTTAGAGGTGATGGTAAAGTATTGA 90930 46 100.0 30 .............................................. GGGAGCAGAAAAATTCACTCTATATCCACC 91006 46 100.0 30 .............................................. ATGTGATTTAATTAATGTAAATCTTAAACT 91082 46 100.0 30 .............................................. CATCTTTGATTTCTCTGATCAGTTTTAGAG 91158 46 100.0 30 .............................................. TACTTTTCCTTCTGCTGTTTTTCTGGTAAT 91234 46 100.0 30 .............................................. ATGAGCATAAACCTCATATATTTTTGCCCC 91310 46 100.0 30 .............................................. AGTCTTGAATTTTATTTGAAATCTAAATAA 91386 46 100.0 30 .............................................. AGTTTGGCAAGACTAAATAAATTCTTGATA 91462 45 82.6 0 ..................................T.-C..G.TGCT | ========== ====== ====== ====== ============================================== ============================== ================== 23 46 99.2 30 GTTGCGACACATCGCGAATTTAAAAATTTTGAAAGCAATTCACAAC # Left flank : TTATAGACCGATCTGTTGAGGAACGCCATAACCAGCACTTCATTAACATTACAAATATACAAAATTTTTTAATTACCAAATAACACACGAGGAATTTTATAAACAAATCGAAAAAAAAGCATCCGAGCTTAAAAATTATGCGACGACAAGATTTTCTTCAAAAGCCAGAAACATTGCTTTGCGGTTCATCAACGGTAATTTTAGAGCTCAAGGTTTTCAAGGAAACACTTTTAAAAGATGGAAACCTAAGTTACGAGACATATCAAATTTAAAAATTTTGAAATCCTTGATGCATGAATTGATCTTATAGGTAGAAATCTAATTTCATCAAGGATTCAGCGAAAAGCGATGGAAAAGTTTGGGCTGAGCTAAAGCAATTCATCTAAATTAGGATTAGAAAATCAACTTATTTCTTAGAAAAAACAGATGATATCATTATTTTTTTTAATTGAAAAAAATCAAATCAATTAACTGAATTTCAGTTAATTGATTTGATTGAG # Right flank : TTGAATTGATTTTATAGGCAGAAATCTAATTATATCAAGGATTCAGCGAAAAGCAGTGGGAAAGAAAAGGCTGAGCTAAAGCAATTCACAACTTGGTTTGTAGACGGCACGCCAAATAAGAATATAACAACGCAATGAGCTGATAAGAGCTTTTTTCTCTCAACTGGAGAAAAAGAACCCCAATTGGTGTTTGTCGGTTCTTTTGGTAGAAACGGCAAATAAAAACTTTTCGTCATTGTCGGTAAACATCGTGTCAGCCATCCTTAACCACAACGGCATCTACAACGATCTGAAAGACCAACCAAAAATGCTAAGTTTGTCTGATGAGATATAGATAATAGTTGTATATTCGCAAGGTCAGACATACTTCTGTCGGGTGTTCCTCAGGGATGAATTGTTTTAGAATTAATATTGTTTTTCGAATAAATTCTATTCTTAATCCTTAACATATCGATAGGTATTAATTCGCTATTGTAATGCAATCCAAATACTAAAAAACT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGACACATCGCGAATTTAAAAATTTTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 4538-285 **** Predicted by CRISPRDetect 2.4 *** >NZ_REFA01000042.1 Amniculibacterium aquaticum strain KYPW7 contig42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 4537 30 100.0 36 .............................. CCAGATTTAAGTTAGTTGTTTGTTTTTGCTGATACA 4471 30 100.0 36 .............................. TTTCAAAGGCTTCTTTTTCGCTTCCTATTCCGTGGA 4405 30 100.0 36 .............................. TTGAAAGGTCTTGTCAATAGAAGAAAAAAAGAAGCT 4339 30 100.0 37 .............................. GGCGAGCTCACACCAATGTTTTGCCAGGAAGTCGTTC 4272 30 100.0 38 .............................. GATAAATCACGAATAATATCCGCACGACCACTAGCCTC 4204 30 100.0 36 .............................. AACGATGAGTATACGTACGATAATTCAGCGTTTCGC 4138 30 100.0 40 .............................. ATTCACCAACGTTAACATTCAAATTCATAACTTTTGGTAA 4068 30 100.0 36 .............................. CCTTTAAAAGAATATTAACCGTGCTGCAATGGTTTG 4002 30 100.0 36 .............................. TTTAAGCAATCTACTAGTACTGTTAATTCTTCTCTA 3936 30 100.0 36 .............................. TGGAAAAGGTGGTGCTTTCCAATAATACTTCGGATA 3870 30 100.0 36 .............................. ACAAAGAGCTGATGAGATTTTCGAGTTCGTGGCTAA 3804 30 100.0 37 .............................. ATGACAAACAACGCAGAAAATTAAACGCCTCGTTGGT 3737 30 100.0 36 .............................. GTAATGCACGAATGTAATGTATTTACGCATTTCTTC 3671 30 100.0 35 .............................. ATAGAACAGGCTTATTAGAATCCAACATCAGCCGT 3606 30 100.0 37 .............................. ACTTTATGAAGGAGTTAGGGCAAGCGACTTTTAACAC 3539 30 100.0 36 .............................. AGAGCTCAAAAAAGAGGAGTTAAAGATTAGGAGATA 3473 30 100.0 35 .............................. CCCGTTGAGGGAATAGTTTATCAACTCTTTTTTGA 3408 30 100.0 35 .............................. TGCGGAAAATGCATAGAATGTTTAAAACTTAGGGT 3343 30 100.0 35 .............................. CAGGGTACATTGTGTTCTTTGCCGTAGTAATCTTT 3278 30 100.0 35 .............................. AAGACGATGAAGACCTAAGACACCTAGATATGTCA 3213 30 100.0 36 .............................. GGAGGTGATGAACATTTGGAGAATAGAGGTGGTGAA 3147 30 100.0 36 .............................. ACGGCGTCTTCGTCGTGAATAAAAAACCACCCGAAC 3081 30 100.0 37 .............................. ATAGTAACGGGATTAAAGCACATAGTTATAATTTTAT 3014 30 100.0 37 .............................. CTTATCAATACGGCGGGTCAGTATCTTGATGTTAATT 2947 30 100.0 35 .............................. CTTGGTTCTCTTGGTGGTCACGGTTTGTCGGTTGG 2882 30 100.0 36 .............................. AAACAAAATGAGCAATGATATTTTTGGTCAAGTTCA 2816 30 100.0 34 .............................. CCTCTAACAATTCTGTATCTATCTAATCGTTTTG 2752 30 100.0 36 .............................. AATACTGTTCACGGAGATATTGCAGACACAATGAAT 2686 30 100.0 38 .............................. TGTTATGTTCACACGTCGCCGTCTTTGGGCGATATTGA 2618 30 100.0 36 .............................. CAAAAAATTACAAGTTCAAAAAAAAACTTAACAGCT 2552 30 100.0 35 .............................. TTAATGTTATTAATGAGCAAGGGAAAAAGGTGGGT 2487 30 100.0 37 .............................. AGAAATCTACAGAAAAGCCTACGCAAAAGCATTTGAT 2420 30 100.0 37 .............................. GATAAATCGCGAATAATATCCGCTCTACCTGAAGCTT 2353 30 100.0 34 .............................. TTTATCAAAAATAATACGTGAAGGAACAAAGAAA 2289 30 100.0 35 .............................. AAGGTAACTGAACGGGATTTCCTTTCTGAGCAAAA 2224 30 100.0 37 .............................. AAGGTAACTGAACGGGATTTCCTTTCTGAGCAAAAGG 2157 30 100.0 35 .............................. AGCAAAACCTCGTAATTTGGATTTCCTGACGGAAC 2092 30 100.0 35 .............................. TCAATACGGCGACCGATTTCGAGGTAATCTGATTT 2027 30 100.0 34 .............................. CGCTGTACATTAAATCTTGAGATATTGGGGGTGT 1963 30 100.0 35 .............................. AAGATGTTTTCCAAACTTGATAAATTTGATTATTT 1898 30 100.0 36 .............................. AGAATGGTTGGAGTTAGCTGCTAGAGGTGGCTCAAG 1832 30 100.0 37 .............................. TACTCACCAACACAGAAATATTTAATCTTTCTTTCTT 1765 30 100.0 35 .............................. TGATTGGCTGACAACGACAAGGAGCGAAGTTTACG 1700 30 100.0 35 .............................. CTTCTTTGAACCTTTGCATTTGGTTGTAGGGGTGA 1635 30 100.0 37 .............................. CACACGGGCAAATCATTTGAGAAAATCGGACACACGT 1568 30 100.0 35 .............................. ATTGTTTCTTTTAAACCTTTTTGAAGGTTGTTTCC 1503 30 100.0 35 .............................. TTTTTAAAAATTTTGTATAGTTATTTTAATAAGAT 1438 30 100.0 35 .............................. TAGGTAAAATAACCTCTTGCAAGCCATCATCTCCT 1373 30 100.0 36 .............................. GAAGAAATAATTAACGACTACAAACGAAAAGTATCA 1307 30 100.0 36 .............................. CACTCATGTATTTTTTTAAAACTTCTCATAATCTTA 1241 30 100.0 38 .............................. TTATTTGAGCAGGAGTATGGTTACCTTCGTCTAATGTG 1173 30 100.0 35 .............................. AATTCTTCGGGTGCTGACTCTTTAATCAAGATGGG 1108 30 100.0 36 .............................. ACGATTTAAGAAAATCAGGCATCGACATTTCAATCA 1042 30 100.0 37 .............................. TTATATTCTACCAAGGAAACCAAATCGGTGGCATCTT 975 30 100.0 36 .............................. GCAAATACAGATAGGCATAACGAGAACGCTTACGAG 909 30 100.0 34 .............................. AGTATTGACCAGCAGTATTAACAAGAGGTAACTG 845 30 100.0 36 .............................. AAAGAAATAACCAAAACAAAGAAAAATAGAGTAGTC 779 30 100.0 37 .............................. ATATGTCGGCATCCGAAAAGCTAAATTATTACACCAA 712 30 100.0 36 .............................. GAAGAAATAATTAACGACTACAAACGAAAAGTATCA 646 30 100.0 36 .............................. CACTCATGTATTTTTTTAAAACTTCTCATAATCTTA 580 30 100.0 38 .............................. TTATTTGAGCAGGAGTATGGTTACCTTCGTCTAATGTG 512 30 100.0 35 .............................. AATTCTTCGGGTGCTGACTCTTTAATCAAGATGGG 447 30 100.0 36 .............................. ACGATTTAAGAAAATCAGGCATCGACATTTCAATCA 381 30 100.0 37 .............................. TTATATTCTACCAAGGAAACCAAATCGGTGGCATCTT 314 30 93.3 0 ...........................TT. | ========== ====== ====== ====== ============================== ======================================== ================== 65 30 99.9 36 CTTTTAATCGTACCATCTTGGAATTGAAAT # Left flank : ATTGCTAAATCACTAAATCACCAGATAAATATGTACATCATCCTCGTTTACGATATCGGCGAAAAAAGAGTAGGCAAAATGCTCAAATTGTGTAGGAAATACCTAAATTGGATTCAGAATTCGGTTTTTGAAGGAGAGATTACAGAAGTTAAACTCAAAGAATTGCAATTTAAAGCCAAAGAAATTATGCAACTTGAAGAAGACAGTTTAATCATCTTCAAGAGTAGGAATGAAAAATGGTTAGAAAAAGAAGTGGTTGGAAAAGAAAAAAATGAGCTGGATACTTTTTTATGACTTGTCGAAGTCTTAATAAAAAATCAGAAAAACGCTCTTTGACATATCGTTTTAAAATAGAACACTGATTATCAATATTTTACAAAGTTGTCGAAACCCCAGTAAAATTATAGAATTGGACATCGACAACTTTTTTAGAAAAAAAACAGTAGTTTTGTTCACAGAAAAGCCTTTAAAAAGGGCTTTTTTAGTCGTCGATTCAACGG # Right flank : TTGAATTTTTTATAAGCTAAAACAAGAATTATACTGTAAAATACATTAAATAGAATTCAAAAAGACAGATAGGTTTCAATCGAAAATATAGGATCTTATTTACTATAAAATTTTAAAATAGCACTTATCCTAAGATTTTTTTTGATTCTTTTTATCCTTCTTAGATTCAACTAATAAATGCAACAGCATTTAAAATAACCAAGGGAAGTGTTTTGCCCCAGGGGCAAAACACTTCCCTTGGTTGGCGAAAAAAAATCACCTTATTTTGTGGTCACTACACTACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCGTACCATCTTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //