Array 1 6312-5419 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZCS01000013.1 Listeria innocua strain 9KSM Contig21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6311 36 100.0 30 .................................... TACCTCTTTCTTTCTTCGCTTCAGCCTTAC 6245 36 100.0 30 .................................... TGGATATTGAAGAAATAATCTTACCTAACA 6179 36 100.0 30 .................................... TTCACATAAAGTAGAAGGAGCTACCGGAAA 6113 36 100.0 30 .................................... TATCATTGTCAATGCGTATATCATGACCGT 6047 36 100.0 30 .................................... TTCCGCATCGTCATTGTTATTTGTGGCGCT 5981 36 100.0 30 .................................... CTCTCGCAGAGTTTGCGCGACTTGTTGACG 5915 36 100.0 30 .................................... AGAGTTTTTTCGTGAATATACAGTATTAAA 5849 36 100.0 30 .................................... TTGGTTTATTGAGCGCATTGAGGCTATACA 5783 36 100.0 30 .................................... TTTATCCCCTCGCAATACCTCAGTACCTCG 5717 36 100.0 30 .................................... TGTCGGTGTTTAACCTATTTTTAACGTTCT 5651 36 100.0 30 .................................... CTCGAAAACAGTCACACGTTTATCCTTTCC 5585 36 97.2 30 ..........................T......... GCGGCGAAGGGAGGTTTGTGAATTGGCTTC 5519 36 97.2 30 ............A....................... GGTTTATATTTGGTATAGTGAAAAATAAAA 5453 35 88.9 0 ..............C..........A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 98.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGATAAGCTGACTGCAACGATTAGTGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTCATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAACAGAAGGATTTTCGCAGGTTATTCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAAAGCTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGAATAAAAAAATTCTACGAG # Right flank : CATCTCTTAACCTACTCCAACTAGAAAAGTTACACCATTATGAAAGAGAGGCCCCAACACATGACACAATACCACTACCTCGCTTCAAAAGCAGCACTAAAAACTACGACATTCGAAAATAAGACAAATTATATATATCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAACGTTGATGAGCGTACAAATGAAAAATTTTCCTACTCCGAACATTTTAACCCAATTTGCAATTTCCAAGTCGCTATAAGTGAAGGGAAATTACCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTATATTATAAAAGCTAGTAAAGAAAGCGATATCCTTGAACTATACACTTCATGGAACGGCGAAGAAAACTTACCTTTGACGAATAAAACAGAATTAGCTATAGAAGATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATTATTAAAAATAAGAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 144338-144875 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZCS01000010.1 Listeria innocua strain 9KSM Contig17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 144338 29 96.6 36 ..............A.............. GGCGTAGATTTATCCCATCGTCTAATTGTTCCATTC 144403 29 100.0 35 ............................. AAGCTATATAAAATCAAATCTAAGGAGCTATCGCC 144467 29 93.1 34 ..............A.T............ CTCCAATCTTGATGTTTTTTAATCGTATTTTTCG 144530 29 93.1 34 ..........T...A.............. GGAGATTTTAAAATCTGATCATAATAACTCACTT 144593 29 100.0 36 ............................. TAGGTTGATTTAAGACCAATGTTTGATGTTGCTTCA 144658 29 100.0 37 ............................. ACCAAGTGGTCTTGATACACATTTGTGCCTGTTGTTT 144724 29 96.6 37 .....................T....... AAAATAGCAATGCCACAAACGGAATACGACAGAATTA 144790 29 100.0 29 ............................. TATAGACCTTTTCGACATTCGTTGGTTTA 144848 28 75.9 0 ..........T.C.C.A......-A...G | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 95.0 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGCTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTATTTTAAATATTAAACTCAAAAACAGTAACTTAGCATAGTGCTGTTTTTTTGTTTTTAGTAAACTGTCGACCAGCAGTAGCGTAAAAATTCCGAAGACCGACAGGAAGTTGTGAATGCTTGGAGGAAGCAGAGTTTGGAGATATTTGCTTTGAAAAAGTATGCTGGCAAAAGTAGATTTTATCTGATTTTGAACAGGTCGACAGAAACAGCCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGCGCACG # Right flank : GCTCAATTTATAATCTTTGCTCACATTTAAAAATTACAGTTTTAATTTACATCCCTTAAAAAAATGCCTTTAACAACCATTGACATTTACCAGCTCTCTCAAAAACTCAAACATAATCTGGAGGACATCAACATGAAAAAAGTTCTAATGCCACTTATGCTACTCGCAGTTTTATTATATGGGTGTTCATCACAAAACGAAGAAGTAACGAAAGAAACTGCCATTTCGAAGACGATTTCTATACGGGCGGACTACACTATTCCAGCAAATTTGGATGAACTAGCAGCCAACAGTGATTCTATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAGTACGATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAAAAAAGGCGAAAAAGTAGATATTTCGGAACCGTGGTATTTAAGTAATGATAAATATGTCGCGGTTGAAAACTATATTGCACTTGAAAAAAATGAAGAATATAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //