Array 1 254386-253581 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXJ02000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain HIY0065 NODE_3_length_371061_cov_13.314609, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 254385 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 254324 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 254263 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 254202 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 254141 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 254079 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 253976 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 253915 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 253854 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 253793 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 253732 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 253671 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 253610 29 96.6 0 A............................ | A [253583] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 272988-270518 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXJ02000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain HIY0065 NODE_3_length_371061_cov_13.314609, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 272987 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 272926 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 272865 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 272804 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 272743 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 272682 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 272621 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 272560 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 272499 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 272438 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 272377 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 272316 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 272255 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 272194 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 272133 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 272072 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 272011 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 271950 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 271889 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 271828 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 271767 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 271706 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 271645 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 271584 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 271523 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 271461 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 271400 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 271339 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 271278 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 271217 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 271156 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 271095 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 271033 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 270972 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 270911 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 270850 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 270789 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 270728 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 270667 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 270606 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 270545 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 41 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //