Array 1 8368-8712 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMTV010000076.1 Bifidobacterium longum strain 1001099B_141217_H2 NODE_192_length_19132_cov_13.0358, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 8368 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 8434 27 96.3 54 ........................A.. ATCATCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [8440] 8518 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 8578 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [8626] 8626 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 8683 27 85.2 0 ..............C.....C....CG | GC,C [8701,8705] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 88.3 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CCATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGCTTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCAGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 28254-30282 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMTV010000002.1 Bifidobacterium longum strain 1001099B_141217_H2 NODE_2_length_41543_cov_11.5872, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 28254 36 100.0 28 .................................... CCACGACAAGTCAGGCCAACACGTATGG 28318 36 100.0 28 .................................... ACCGTTCAAGCAAGTGCACTCGATAGTG 28382 36 100.0 29 .................................... CAAAAGCAAACGTCGGATTAACGGCACTA 28447 36 100.0 28 .................................... GTGAGGATGCAGTCCTGCAGCTCCTCCT 28511 36 100.0 28 .................................... TTCAATCCCGTGAGGAAGTTCTGCAAGC 28575 36 100.0 28 .................................... CCATCCATAGTAGTGGTATCGAAGAAGT 28639 36 100.0 28 .................................... TCGTCTTCGGTGCCCACTCGCGTGCAGC 28703 36 100.0 29 .................................... ATTCATGACGCTTCGGGTGCTGTTGCCGT 28768 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 28833 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 28897 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 28961 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 29025 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 29089 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 29153 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 29217 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 29281 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 29345 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 29410 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 29474 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 29538 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 29603 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 29667 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 29732 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 29797 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 29862 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 29926 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 29991 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 30055 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 30119 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 30183 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 30247 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 32 36 99.6 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //