Array 1 12783-12054 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQLU01000036.1 Streptomyces solaniscabiei strain FS70 NODE_36_length_80843_cov_167.866453, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================================================================================================== ================== 12782 29 100.0 26 ............................. TGGCGATCGCGCGGTTTCCGGTCTCA 12721 29 100.0 32 ............................. CGGACCCGAATCCAGGTGCCGGCCGAGTACAG 12660 29 100.0 32 ............................. GGCAGCCCAGGGGCGGCGTGTTCGGACCACCC 12599 29 100.0 32 ............................. CATCGTCTCGGAGGGGTACCCCACGATGGCGC 12538 29 100.0 32 ............................. GTCAGACCCACCCCGGCCGCGGCGGAGTCGGC 12477 29 96.6 32 ............................T CTTCACCGGCACCCGGAGCTGATCCCGCAGGT 12416 29 100.0 32 ............................. CGGCGGCACGAACACGTCACCAACGCGGCGTT 12355 29 100.0 31 ............................. CCGTGAAGGCGAGCCCCTCCATCTCGGTTGT C [12339] 12293 29 96.6 180 .......................A..... CAACTACGGTGGTGCCTTGAGGACGCCGTCCGCGCCCGCTGGCAGCCCCACACCCGTGCCCAGGCCCGCAAGCAGGCCGCCACCAGTACTAGCCTGGTCCTAGACACCCGGGCCAGCTTCGGCTTCACCGCAGCACCCGGCACCACCGACGACGCACGCATCCGACACCTCACCCTCGCC GT [12264] 12082 28 69.0 0 ....-..............CCCGCC..TT | A [12065] ========== ====== ====== ====== ============================= ==================================================================================================================================================================================== ================== 10 29 96.2 48 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCGGGGGTGGCTTTGCCGATGTCGTGCACTCCGGCGAGCCATACGGCCAGAGCGCGGGCGTCCGGCTCGCCCTGCGGCAACGCCTCGGCCACCAGCCTCCGCACCCCTATGGGCAGCCACTGGTCCCACAACAGCCCGGCAACCGCGGCACTGTCCTCCATGTGCCGCCACAACGGCAGCCACCCATCGGTGTCACGGTCGTGCTTGGCCCACACCGACCGTGCCGGCCCCCCGAGCCGACGCAGCAGGCCGACATGGGCATTCCCCCCAATGCTCATGAGGGATTGATACAGGCAGAGCGCCCCTGCGGGCGGCAGAATGAGCAAATAGGATGATCCACAGACAGGGGGCGCTGGCCAGCTACACGGTGTCCGGCTCACCACCCCGATCACTCGGAATCCCTAGCATTTACCGGATGTCATTTAATGTACTTTTTGCCGGAATCTCCAATGCTTGCTGACTTCATGCTTTCCCAGCGCTAAACCTGCAGGCCAGGCAGT # Right flank : CGACGCCCAGGACCAGGGCGCCGGCGAACAGCAGCTGCGGGCGCTCGCGGCCGAAGCGCTCGGCGAGGTCTACTTCCGCGACGGCGGCCGCCGCGCCACCGGCCTGGGGGTCGAGTTCACGGATGTCGAGCACGTGGAGTTCGACCTGTAGAGCTGGAGTGACGAAGCTCGCTCGTACAGGCGATCATGGTCACCACGGCCACGGCCTTCTCCTCTGCATGCGAGGAAGGTAAGGGCAGTCTCTCGCCCGCCACTGACAACGAGTCACCCCGAAGCCGAGAAGGGACGGGAGGACCGGGCGGCCGGGCAGGAGACGTAACAGCGGATGCGTCGCGCTCCGGCCGCCCGCAGCCTCAGTCACGACGGCTCCCGTACTGGCTTCTAGCTGCCGGCCCATCAGTAAGTGCCGCTAATCTGTGAGTTGTTCTCTTCGCCGAAGCTTGGTAGGGCCGCCGGCGGAGTGCGGGTCTTCACACTTGGGAGGCTGAGCGGACGTGGGG # Questionable array : NO Score: 4.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-1.67, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22494-22644 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQLU01000036.1 Streptomyces solaniscabiei strain FS70 NODE_36_length_80843_cov_167.866453, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22494 29 100.0 32 ............................. GGACCTTAGCGATCACCAGTTACGGCGTCACC 22555 29 100.0 32 ............................. GTCGACCGCAACATCCGCCAGTCGATCCCGAT 22616 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGGCGTCAACCAAGCCGGCCCCGACGACTACGGGGACGGGGTCTGGTGACCGTCATCGTCCTCACCAACTGCCCGGCCGGACTACGCGGCTTCCTCACACGCTGGCTGCTGGAAATCTCCGCCGGCGTGTTCGTGGGCAACCCCTCTGCCCGGATCCGCGACGTGCTCTGGGACGAGGTCCAGCAGTGCGCGGGCCAGGGCCGCGCACTGCTGGCCCACACCACCAACAACGAGCAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCACCCGACCGACCACGAAGGCATCACCCTGATCCGCCGCCCCGACCCGAACACACCCACCCCCGGCCCAGCACCCAGGAACGGGCCACCACCTGGCTGGAGCAAGGCTGCCAAACGCCGCCGCTTCGGGAGAGGCTGATGGATCAAAGTTCACCTATGTCCCATTTGTCGAAATCAAAGGCAGTGCTCGAAAACCGCCTCAGGCGTTAGCAAACCTGCAGGTCATCCAGT # Right flank : CCAGCGCCGGGGGCGGCGGTGAAGCCGAAGCGAGCGCGGGTATCGATGACAAGTCCGGCGGTGGTGGCGGCCTGCTTGCGGGCCTGGGCGCGGATGCGGGGCTGCCAACGCCGGCGTACGGCGTCCTCGAGGCGCTGGGCGAGGTCGGCGCGGGGCCGGCGGATTTGGTCCTTCACGTAGCGCTCGACGGTGCGCTGCGAGACGCCGAGCAGGTCGGCCACGGCGCGGGTGCCCTTGAGCTGCTGGACGAGGTAACGCATCTGCGCGCCGGGCGACTTGGGGATGGGGCGGGTGAAGGCCTGTTGCACGGCGCGGTCGAGGCCGTCTCCGATGATGCCCATGCGGGCTCTCCATTCATGATCGGCTGTGCGGGCCGAACCAGTCCACGGCTTCGCGCAGGAACGCGGCCGCGTCCGGCCAAGCCAGCGGGACGAGACCAGCCGGCACATCACCTGGCGCAGCGTGACACCGTCCGACCGGCGGCCGGCGAGCCGTGCGCG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 182012-178274 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQLU01000007.1 Streptomyces solaniscabiei strain FS70 NODE_7_length_182037_cov_64.312366, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================== ================== 182011 29 100.0 32 ............................. AACGTCGTGACCGGCGTCGGGTGGGGCTTCGG 181950 29 96.6 32 .............T............... CCCCTTCCGGGTCATGGGTGAACAGAGCAGAG 181889 29 96.6 32 .............T............... CTCACGCCCCACCCGGTCCGGGTCTACGCCGA 181828 29 93.1 32 ...........G.T............... AGCCAGCCGATCGGTGGGATGCCGGGCCGGCG 181767 29 96.6 32 .............T............... GACGAGTGGACCGTGACCCCCTCGGCCCCCGC 181706 29 93.1 32 .............T.A............. CAGCCGCGGCGGACCACCCGGGCGGAGCGCAA 181645 29 96.6 32 .............T............... ACCCACATGACCGAGCCCACCGACAACGCCCC 181584 29 100.0 32 ............................. GGGGGATCGGGGTCCTCCCGGCGGCGCCGTAG 181523 29 96.6 32 .C........................... GTCCCGATCCCGACCGGGGCGAACGTCACCTG 181462 29 96.6 32 .C........................... ATCGCGGCCGAGTTCGACCGGGCCGCGACCGC 181401 29 96.6 32 .C........................... GCTAACGCGGCGAGCACGTGGAAGCTCCGCAT 181340 29 89.7 32 .C.........GT................ TCGTCGACCAGGGCGGCGAGGATCGCCCCGTC 181279 29 96.6 32 ...........G................. CCTTCTTGGGGTTCAGGTTCGAGACGAGCCGG 181218 29 96.6 32 ...........G................. TGGTTGGGCATGGGGAGGGTGAGGCCGTTGAC 181157 29 96.6 32 ...........G................. AACCTGCCCCGCGCGGACCACTGGGATGCCCG 181096 29 100.0 32 ............................. GACGGCGACGTGACGCTGACCGTGCAGCCCGC 181035 29 100.0 32 ............................. GCCTGCCGGGGCGTGGCCGCCTGCGCGACGAC AC [181024] 180972 29 96.6 32 .............A............... TGGATGTACCAGCTCTTCGACGTCATGCAGGG 180911 29 96.6 32 .........A................... TGCTCCGCGCCCTCTTCCTCGAAGGACTCGAA 180850 27 89.7 32 ....C...........--........... TCACCCGACGTGATCTTGCAGCCGAGGAACGT 180791 29 96.6 32 ...............A............. GCGGCCCGCATCTGGGCGAGGATGCCGGACAC 180730 29 100.0 32 ............................. AGGGTGTCCATTGCCTCGTCGCCGTTCTTGGC 180669 29 100.0 32 ............................. GAGACGCTCGCCGTGGAGATGTGCCAGGTGTG 180608 29 89.7 32 .........A.G...........C..... GAGATCCCCAGGTCGCAGTGCTCGCAGAAGAC 180547 29 100.0 32 ............................. TACGTGGCCCGGGACAGCGACGGGGCCCGGTG ACCC [180538] 180482 29 89.7 39 ..........................GGA TGGTCCCGCCGCCGGCGCCACCGCCTCCGATGCCGATAT 180414 28 89.7 32 ........T.....-..........C... ATCGCCAAGGTGTCAAGGCATACGGTGGTCCA 180354 29 96.6 32 ..A.......................... AAGTGGGACTCCAACTGGCAGGCCGGCCACCC 180293 29 96.6 33 ...T......................... GTCACCCAGCACTCCTACGACCCGCTACGCCGC 180231 29 93.1 32 ..........G...T.............. TGCTCCAGGTTCGTGCCCCAGAAACGCTGGCT 180170 29 100.0 32 ............................. ATTTCCCGCAGTGCCCGGTCGAGTTCGTACTG 180109 29 100.0 32 ............................. GGGTTCGTCCGGGTGTCGGCCTGGTAGCCCGC 180048 29 100.0 32 ............................. CTCGTCGTGTACGTGCGCGGCGTCATACGGGA 179987 29 96.6 32 ..............T.............. CCCGAGCACGCGACGGAGGTGACGCTCGATGA 179926 29 100.0 32 ............................. GAGGAGCGCCGCGACCTCGCCCTGGCCACGGC 179865 29 96.6 32 ......T...................... GCGGATCTCAACGGGGCCCGTAAGGGGGCGTC 179804 29 86.2 39 .......T..................GGA TGGTCCCGCCGCCGGCGCCACCGCCTCCGATGCCGACAT 179736 29 89.7 31 ........T................C..A TCGCCAAGCTGTCGAGGAATACGGTGGTCCA 179676 29 89.7 32 ..A.................A..T..... ACCGATCCCCGCGACAATGGCCTGTACGTCAC 179615 29 96.6 32 T............................ AGGCGCAGGAAGAACGTCTTGCCCTGCCTGGG 179554 29 96.6 32 .........A................... GGCTCCAGGTCGCCGCCACTCTTGCCGTTGGC 179493 28 93.1 32 .C.......-................... CGAGGGGAGCAACCACCCAAAACAGGCGGGCC 179433 29 100.0 32 ............................. GACAACGGCAACTTCCAGTACCGGATCGTCCA 179372 29 100.0 32 ............................. CTGAGGCGGGGTACGCGAGTCGTACCTAGCAA 179311 29 96.6 32 .................A........... TGGTGCCACCGACACAACTGCCCTATGGGGCA 179250 29 96.6 32 ...........G................. GACGAAGCCGCCATGCAGGGCATCCACGGCAC 179189 29 86.2 32 ...............T.A.........TT GTCGCCGCGGCGCCGAACAGCAGTACCTCCCG 179128 29 86.2 40 ....C.........G..A.......C... TCGAGGCTGGACAAGGTCGTGTCGCTGGACGTCTGCTCCC 179059 27 93.1 32 .............--.............. CAGACGCCGTCCTCCGTGCGCAGCCACCGGAT 179000 28 96.6 32 .....-....................... GGCACGGAAGGTGCTCGGACTGCCGGACCCCG 178940 29 96.6 32 ...............A............. TCGTCGGCCATCATCAGGGCGGGGATGCTGTC 178879 29 93.1 32 ........T........A........... ATCTTGTACGGCGCCGTCTCCGCCAGGGCGGG 178818 29 93.1 20 A.................A.......... GCAAGATCCGCTCGCCGGGT Deletion [178770] 178769 29 89.7 32 T................A.......C... CCTCCGTCCAGGTCGCGGCGGTTCTGGTACAA 178708 29 96.6 82 ............................T ACCCCGCCCCGTACCCGGCCACGGCGATTCCGGCCGCATGCTCCCGTCCCTCGTAGCGGGTCGCCACGTGGGCCAGGCCGGT 178597 29 89.7 32 ..............TTG............ GACGACGGACTCATGCGCGAGTCGCGGGCGAT C [178592] 178535 29 96.6 32 ............G................ GACGGGGACCGGTCGGCCTGGTCGCCCCTGGT 178474 27 82.8 28 T...........A......A.--...... GGGGAACAGAAGGTACTTTGAGCGCTGC 178418 29 75.9 23 ACT..G.....G..........C..C... GTCCGACGGCAGGAGATCGCGTT GGCC [178393] Deletion [178367] 178362 29 89.7 31 GC...............A........... GGCCGGATCTACGGCTGGGGGCCCAGGCCGC 178302 29 93.1 0 .........A..............C.... | ========== ====== ====== ====== ============================= ================================================================================== ================== 61 29 94.7 33 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TAGCGATCACCAGTTACGGCGTCAC # Right flank : TGGTTGAGCGTGATGTCGGCGCCCTCGGAGGGGGCTGGGGGAGGAGGTATCCACCTCCTCCGGGGGGTGTGGGGGGTGCGAAGCGGATCGCGGGTTTTCCGCATTCCGGCTGTGACCAGGCGAAACGCGGGTTTCCCGCGATCCGGAGGGCTGGGAATCGCGGATTTCCCGCACTTCGGTGCTGACCTGCTGTGATGCCGCGATGCCGAGATCGACGTACTGCTCGTTGTTCGCCGGGTTCCGGTAGACCCGGGTCACCCAGGTCGGGCGCTGCGTGGCTTCGTCGTAGAACGAGACGCGGCTTCGACCGCCGGATACGGGCGGTGTACCTGCGGCGGAGTGCGGGCGGCATGTATCCGTTGGCCGCAGGGGCCTGTCGGCCCCGTGGCCGCCCCGGGAGCGGGCGCGGCGCGCGGCCGGGCGGCGGGCGTACCGCGCCGGGCGATGAGGGCGCGGCAGAACGCGACAGGCTGGGCGCGGCGGCTGCAGCGCGGCGCGGT # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [60-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //