Array 1 52505-55746 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFFL01000003.1 Salmonella enterica subsp. enterica serovar Senftenberg strain 14V156 NODE_3_length_311840_cov_46.7131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 52505 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 52566 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 52627 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 52688 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 52749 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 52810 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 52871 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 52932 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 52993 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 53054 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 53115 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 53176 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 53237 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 53298 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 53359 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 53420 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 53481 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 53542 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 53603 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 53664 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 53725 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 53786 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 53847 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 53908 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 53969 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 54072 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 54133 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 54194 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 54255 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 54316 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 54377 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 54438 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 54499 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 54560 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 54621 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 54682 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 54743 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 54804 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 54865 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 54926 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 54987 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 55048 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 55109 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 55170 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 55231 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 55292 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 55353 29 96.6 32 ............................A CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 55414 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 55475 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 55536 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 55597 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 55658 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 55719 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ========================================================================== ================== 53 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 72292-74518 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFFL01000003.1 Salmonella enterica subsp. enterica serovar Senftenberg strain 14V156 NODE_3_length_311840_cov_46.7131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 72292 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 72353 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 72414 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 72475 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 72536 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 72597 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 72658 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 72719 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 72780 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 72841 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 72902 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 72963 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 73024 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 73085 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 73146 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 73207 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 73268 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 73329 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 73390 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 73451 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 73512 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 73573 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 73634 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 73696 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 73757 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 73818 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 73879 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 73940 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 74001 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 74062 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 74123 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 74184 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 74245 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 74306 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 74367 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 74428 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 74489 29 100.0 0 ............................. | A [74516] ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //