Array 1 1984942-1985800 **** Predicted by CRISPRDetect 2.4 *** >NC_011420.2 Rhodospirillum centenum SW, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1984942 36 100.0 38 .................................... GAAGTCCTTAGGCTCCTGATCATAAAACCCGAAGGGGC 1985016 36 100.0 39 .................................... ATTCTGTTTCGGACGTCGCTGAACGCCGTCCACGCCGCC 1985091 36 100.0 40 .................................... TGCCGGACGGTGCCGCAGAAGTCGCGGGCGCCTCGACCTT 1985167 36 100.0 39 .................................... GACGCCGTCGCTCCACCGTTCGGTGGTGGGGCTCAGGGC 1985242 36 100.0 39 .................................... TCCCGCTGGTTGGCATACGGCTTGAGGCTAGCGTACAGC 1985317 36 100.0 38 .................................... GCCAGCGTCGGCACCAGCTCGAGAGGTCGGCCGAGCCA 1985391 36 100.0 37 .................................... TGAAGGCCCTCGCCCAGGCCGGCCGCGATCCCGCCCG 1985464 36 100.0 40 .................................... GCGAGTTCAACGACGGTGCGCGCGACCTGTCCCGGACGCC 1985540 36 94.4 40 .............C......C............... GCCGACAGGTTCTCGTCAGAGATCGGGGAGAGGGCGATGC 1985616 36 97.2 40 .............C...................... ACCAAATGGCCATGTGCCAAGCCCGTCCAAACGCAAGCCC 1985692 36 100.0 37 .................................... TCCGATTCCACCGGCATGATCGGTGTCCGGGTGGCGC 1985765 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 12 36 99.3 39 CTTCCTCGGCCCCTCGGGCCGAGGCCTCATTGAAGC # Left flank : ACGGCTCTACATCGTGACCTACGACATCGCCGACCAGAAGCGCTGGCGGCGCGTGTTCCGGGTCATGGAGGCCTATGGCCACTGGCTGCAGCTGTCGGTCTTCCAGTGCCGGCTGACCGCGCGGCGACGGGCCGCCCTGGCCATGCGCCTGGACCGCGAGATCAAGCCGGCGGAGGACCATGTCCTGATCCTTGACGTGGGGCCGGCCGATGAGGTGGATTTGCGTGTGGAAAGTCTGGGCAAGAGCTTCCAGGCCATCGTCCGCGAGGCGCGCGTGATCTGACCCCCGGCCCCGGTTGCCGGCCCCGGTTGCGAGCGGTCCGATACCCCCCGAAAGGCGGGACCCGCTCGAATCAAGACAAGCCTCTGTTTTTGCTTTTGTTCTTGGACATCGTGAAGTAGAGTTCATGCCGTAAGGCGCAGTGTTGCACCCCCGATACCCGACCCGCTCGACTCCCCCCGGAAAAGCCAGGGATCGTCAGCAGGTTGGACCAGGGGGG # Right flank : CGTCGGTCCGGGCCTTGCCGGGAAGAGCGTGCGGGAGAGGATGCCCTGCAGGCTTCGTCCGGCCATCAGAACCGCCGTGCCCTCAACCCTCGCCGGTCGCTGGAAACCCGGTCCCCCGGGGGGGAAAGCAGGCCGAAAACCGGAACGGTGTCCGGGTGCCCTGCCTAGGACCGGAGCCCGCGCAGGCCGGCGGCGGAGAGCAGGAGCCAGCCCAGGATGAAGCAGACGCCGCCGACCGGGGCGACGGCGCCCAGTGCGCTCGGGCCGAACCAGCCCAGCAGATAGAGCGCGCCGGGGAACAGCAGGCAGCCCAGGGCGAAAGCGGCGCCGGCCAGCGCCGTCAGCCGGTCCGCCCCGCCGTGCCGCCGCCACGCCACCAGCCCCAGCAGGGCCGCCGCATGGGCAAGCTGGTACTGGCTGGCGGTCTGCCACAGCTCCACCGCGCGGGCATCCCGCACCGCGGGCAGGCCATGGCTGGCATAGGCACCGCAGGCCACGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCTCGGCCCCTCGGGCCGAGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.00,-12.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 3015058-3012115 **** Predicted by CRISPRDetect 2.4 *** >NC_011420.2 Rhodospirillum centenum SW, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 3015057 36 100.0 39 .................................... AGGTATTGACATTCCCAAGCCCCCTTGCGCCCGCGCGAG 3014982 36 100.0 38 .................................... GCACCGAGCGCGGAGACGTTGACCGTCACGGTTCCTGT 3014908 36 100.0 40 .................................... TTCGGTGAAGCTGGAGAAGTAGAGCGACACCGTTCCGGAG 3014832 36 100.0 37 .................................... AGTCGCCCAAACTGACCGCGCCACCGCGTATGCGCAG 3014759 36 97.2 36 ..................T................. AGCATCTTCGCCAGCGTCACGGCACGGCCGGCGGTG 3014687 36 100.0 36 .................................... GTCTTCGTGGCCCGCGTCAACTGACCAGCGTCAGGG 3014615 36 100.0 41 .................................... TGATCGAGCATGGCCTCGACGTTGAGCGTGGCCATGTCCGG 3014538 36 100.0 37 .................................... TTCCAGGACGGGGGCGGTCTTGTTGCCCTCCTGCCCG 3014465 36 100.0 36 .................................... AGACGGCGCTGAGCACGGCGCCGGGGCAGCGGATGG 3014393 36 100.0 39 .................................... TTCGCGGCGCGCCTGCACGGCGGTGCCGCTGAGACCGCG 3014318 36 100.0 40 .................................... CGGCCAGATCACGGGCGACCAGCTTGCCAAGATGACGGAG 3014242 36 100.0 36 .................................... GCATGTATGGAGACCGGCTCAGGCCGGGGATGTGGG 3014170 36 100.0 36 .................................... GGGCTGTCGAGCGGGTCCGGTCAACCCGCCCGCGTG 3014098 36 100.0 42 .................................... AGTCGCCGAAGTGCGGTGTAAAACGCGCCAGTGCCGTTCCAA 3014020 36 100.0 43 .................................... AGCGCCTTTGCAATGTCGTCTGCCATCCGCTCGGCCTCTTCCC 3013941 36 100.0 39 .................................... CTCCTCGGGGGACATGGGCTTGTGCAAGTCAGTCATGTC 3013866 36 100.0 39 .................................... TGGCCGGACACGACCGTCACGACCTCGCGGGAGATGTCG 3013791 36 100.0 40 .................................... AGCTTGATCTCGATCCGCTGGAGGTCCTCGAGGGTCTGGG 3013715 36 100.0 36 .................................... CCGCGTCCCCGTGGTGCAACAGCCGCAGCAAGAACA 3013643 36 100.0 39 .................................... GCCGCGGGCAGGTGGTGGGCCTCGTCCAGCACGGCCAGA 3013568 36 100.0 36 .................................... GAGTTGACGCGGATCATCCGCACGGGTGAGGTTTCG 3013496 36 100.0 40 .................................... CAGGCTCATCGCGGCATCCTTCGCCGCGGCATAAAACGCG 3013420 36 100.0 37 .................................... TTCTTCAAGCAGTGGGGGGAGTTCGAGCCATCTGCCC 3013347 36 100.0 40 .................................... CGGGTGCGCGTCTCCACGCTGCCGCAGCACGATCACAGTA 3013271 36 100.0 40 .................................... CGGTTACGGCCACGGCTGGGGCTGGGGCTACGGCTCCGGC 3013195 36 100.0 40 .................................... CAGAACCATGTCCTGCAGTTCGGTATTCCGCTTGTACAGC 3013119 36 100.0 39 .................................... CGCCAGATCGCGACCCGCTTCCCGGCGGAAGTGGACCGA 3013044 36 100.0 37 .................................... GATGCAAGTCTGATGCTGCCCTACAGACTGTAGGGTG 3012971 36 100.0 36 .................................... TAGCTATAGCAGCACTCTCGGCAGCCGATGAGGCAT 3012899 36 100.0 42 .................................... AGGGAGGGGGATCGACTGACAAGGCCGCGGCCCCAGCGGGAT 3012821 36 100.0 36 .................................... TCTTGCCGGCGTCAGATCGTGCCCGAATGTATCTTC 3012749 36 100.0 40 .................................... TCACGGAAGAGATTAAAGAGAAGACTGTAGTCGACTTCAA 3012673 36 100.0 38 .................................... GGGCGGGTCGCCGGGACGAAGCTGAAGAAGCGGACGTC 3012599 36 100.0 40 .................................... TCGGCCTTCTCCTGGCCGTACTCGGCGAGCAGCCAGTCGC 3012523 36 100.0 38 .................................... CTGTCGCGGTAGCGCGCACCGGGCAGGGACAGCGCAAT 3012449 36 100.0 39 .................................... GCACCGCCCGTCTCGATCAGGGCCAGCATCTGGATGGCG 3012374 36 100.0 40 .................................... CTGGTTCTCCACCGTCGTGCCGAGCCAGACGTTGGCCAGC 3012298 36 100.0 38 .................................... TTGATGCGATCCACTTTTGCTCGAACATTAGATACGGT 3012224 36 100.0 38 .................................... ACGTAGCGGCAGACGCCCAGCTTCAGGTTCGGGAGCAC 3012150 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =========================================== ================== 40 36 99.9 39 CTTTCCCCGGCAGAAATGCCGGGGCCTCATTGAAGC # Left flank : GGCATGGTGGTGCCGGGGGCTGCGTGCGATCTGGTCGTACCGGCCTGTCTGCATGGTCCCGCTCCTCCCTGCGGAACGGAACAGCAAGCGACGTGCCAGGGCCGGCGGGCCGGGGAAGTGCCTGGAATCGCGGGAAACCGGCCCGGCAGCCCCCGCCCCGCGGCGGCGCCCGCCCCGCCACCCGGCGGAATCTGCCCGGCAGCTTCGTCTCCCCCGTTCGCGCGGGGTCTGCGCGGCTCCGCGACCGCCGCTTGACCGTGATGCGGCGGCGACGGAGGATACGGGCCTGGGGCCGCGCCGCCGGCCCGCCGGCGAGCGGTCCGGTGCCCGGGAAATCCCGGGACCCGCTCGCAGACCGGCAAGCCTCTGGAATCGCTCCGGTTCTTGGACAGGGTGAAGATCGAACAGGCCGTCCGGCACAGCCCCGCCCCTCCCGCCACCGGACCCGCTCGCAGCGGCGCCGGTTCCGTGTTACTTTCCAAGGGCCTCCGAAGGGGAGG # Right flank : CTTGGAGCAGGCGCCGGCGTCCGCTTCCATGATGTCCCTCTGGGAGACGTCCCTTCGGGGAAGGCCCGTATGGGAGATGACCGGCCGTCACCGAGCCGCCGGCCGGCCTCGTAGGTGGCGACCGGGAAGAGCGGGGCAGGCCGGCGGCCCCGTTCTTCAGTCCTCCGGGCGGCAGCGCCCGTCCGCAACGCCTGCCCTCCGCAGCGCCCGCCCGATCCGCTCAGAACAGGTGGCCGGCGCGGTCCGCCTTGGCGCGGAGATAGGCTTCGTTGTGGCCGTTGGAGGGGAAGATGTGCGGGACGCGCTCCACCACCTCGATCCCGCAGGCCGCGAGCTGGGCCAGCTTGTCGGGGTTGTTGGTCATCAGCCGCACCCGGTCGAAGCCCAGCGCCTTCAGCATGGCCGCGGCCGGCAGATAGACCCGCTCGTCCGCGTCGAAGCCCAGGGCCGTGTTGGCGTCCAGCGTGTCCAGCCCGCCATCCTGCAGGCGGTAGGCGCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCCCGGCAGAAATGCCGGGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 3432978-3431850 **** Predicted by CRISPRDetect 2.4 *** >NC_011420.2 Rhodospirillum centenum SW, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3432977 29 100.0 32 ............................. AACCCTGCGATGGTGCTTCTCGCCATCGCCCT 3432916 29 100.0 32 ............................. TCTCCGTTCGCCCCCGGGGATAAGCAGGTGGA 3432855 29 100.0 32 ............................. CGGCAGACGGTTATGGGGTGCAGCCCGAACCG 3432794 29 100.0 32 ............................. AAAGCAATCGTCACGACAGCCTCTCTTCTGTG 3432733 29 100.0 32 ............................. GCCCGCCCCGTTCGATGATGGCATAGTCCGCG 3432672 29 96.6 32 ............................G CCCGGTACCACGGGCGACGGCCCGGACGCGCC 3432611 29 100.0 32 ............................. ATGAGAGGCGATTACGCGGTAGCCCTCCACCC 3432550 29 100.0 32 ............................. AAATGCGACAGCATCAATCCCATTGATGCGCG 3432489 29 100.0 32 ............................. CCTGCGCTGTCGACGACAGAGGTGTGCCAATA 3432428 29 100.0 32 ............................. CAGCACTACATGGAGGTGCTATGACCGCGCAT 3432367 29 100.0 32 ............................. GCTGTTGGCTTCTGGGAGCCTGTCCGTCTGAT 3432306 29 100.0 32 ............................. TCGTCCAGATCGGCGCGCATCTCCTCCCCGTC 3432245 29 100.0 32 ............................. CGAGCGCACCCGCCCAAGCTGACCACCACCAG 3432184 29 100.0 32 ............................. TGTCCGGCGAAAGGCATGGCTTGCACTCCCGC 3432123 29 100.0 32 ............................. TGGTCCGCATCGCCAAGACGCTGGACCGCGAG 3432062 29 100.0 33 ............................. TCCTCCAGCCGGGCTGGCATACTCGCCCAGTGC 3432000 29 96.6 32 ............................G TATGACCGGGCAGAAGCGTACCTCCGGAACAA 3431939 29 96.6 32 .......................T..... CAGTCCCAGGTCGCGCGGTACTCCGCCTCCGG 3431878 29 93.1 0 .........................G..G | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.1 32 CTTTCCCCTGCATGTGCAGGGATGAACCC # Left flank : CACGGTGCCCCTTGCCTTCCGCTGTGTGAAGCGGATCGACCAGGGGGCGACGGACAGCCTGGACCGGATCTGCCGCCGCGCCGTCTCCGCCCATGTGCGCGATACGGGCTTCATCGACACCATCATCGATGACATCAAGGAGGTGCTGGCCTGATGATTGTGATCTGCCTGTCCGACACGGCCGACAGGTTCCACGGATTCCTGCGGTCCGTCATGCTGAACGTGCATCCCGGCGTCTATGTCAGCATGGACCTGGACAAGGGCTCCCGCGAGCGGATCTGGGACATCCTGACCCGCTGGTGGGAGGCGGAACCGCGCGGCATGGTCCTGATGATCCACCGCGACACCAGAAAATCCATGGATCTGGACCTGCGCAGCCTGGGCGCCCCGAAACGAACCATCGTCGATTACGACGACCATTACGCCCTGCGCAGAAAAGCCACAGAATAGTCCTGGACTTTTTCCGGAAATCATCGTTTTTTCAGATGCCTGCGGCTACC # Right flank : CCTTCCCCTGGAGCGGAGAGGTGGATGAGGTCTTGATCCCGCCGGAGAGTGCGCCTTACCCTCGACAGGCTGCCATGTCCGGAAGACGGGTCCGGCGCCGGGTCCGGAAGGGCCGGGCGCATGGGGACGTGACGCACCCCCGCGGCAGCCGCCCTTTCCCCCGATGACAGACTCCCCAGGGCAAGAGCCGCCGGCAGTCGGGGCCGGCCGGGTCGGCTCCAGCCGCGTCGCCTTTCTTTGCGCGCGCTGGCTCCGGGCACGCACTGGCCCGGCACGCGCCGGGATGAGGCCGGCACGACAGGCCCCCTGCGAGGAAGATCGGACCGCCGGGGAGGGGGACCGCCGCGGAGGTACGCTACTCTCCTCTTTACCGTGACCCGCCCCTGGCGGGCCCCGGCCCCGGATCGCGGTTGCCGGGTGTCGCGGCGGCTTGCCTGCTCTATGCCCGCGTCCGTCCCCGGTCAAGCCGGTCCCCGGTCGCTGCGGGGGGCCCTTCTTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCCCTGCATGTGCAGGGATGAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 4 3434927-3434641 **** Predicted by CRISPRDetect 2.4 *** >NC_011420.2 Rhodospirillum centenum SW, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 3434926 30 100.0 31 .............................. CATCAGGTCTTCGTCGATCCCGGCATCGGCC 3434865 30 100.0 31 .............................. TCTAGCCCGTCCGGTCGGGGATGCCCTTTCC 3434804 30 96.7 31 C............................. CGGCGCCGAGCGGTCGGACTTAGCTGCTCCA 3434743 30 100.0 43 .............................. GAGGTCATCGAAGTGGACGACGGCCTGCGCCCGTCGCCCCTGC 3434670 30 83.3 0 CCCT....................T..... | ========== ====== ====== ====== ============================== =========================================== ================== 5 30 96.0 34 GGTCGCCCCTGCCCCCGCAGGGATGAACCC # Left flank : CGGAGCCGACGCCGCGCCCGACGCCGAGGCCGAGCCGGGCCACTTGGCCGGGGGTAGGCAGGCGCGGATCGTCTGGGCCCACGCCCCGCGTGACTTCGTGGATGTAGGCGTCGCGGATCGCCGGCCGGCCAGCCAGCGCGCCGGTACGGCCGCTGCCCAGATCCTCCAGGAGATCCCGGTGGGGGGTCAGTCGCTCAGGGGATAGGTCCTGCGGGCCGACAGCGTGCCCACGATCTCCAACGGGGGCCCATCCGCCGATGAATTCCCCGGCGAGGTGTGCGTAGCGCTCCTCGCCGAGCCGGCGGGGTGGATAGAGACCCTCGTCCAGTCGATACCGTTCGTCGATCCAGCCGGCGTCCTGGCGGAAGAACCGTCCGTATTGTCCGTCATCGACCCGTCCCTCCCGCAGGTTCAGATGGGCGGCCTCGTGCCCCAGGATATTGTAGGGGTTGGGGGCTGAGGCCGCAATGACAAGGAAATGGCCGCCGCCCCCGCGCAGC # Right flank : CAGGTGCTCTACGACCGGCAGGAACAGGGCGGGAAATAAGGTGGGCGCACGGTGGGGCCTCGCAGGTAACCCCACATGGCGCTCCGCCGGGTTGCCCCGGCGTGCTACGGCCGCGAGAGTATCACCGTGTCGCGTGCGCCCAGCGCAGTCTAGCGCAGGGCCGGCGGATGCGGCTACGCAGGGTGAGGGTGGTGACCTTCAGGCGGCGGCGGAAAGCGCGCCGTGGAAGCCGGTGACGGGCTGGCGGCACCCTTTTGGAGCGGCGAAGCGGTTCGAACGCATTCTGAACGCGTTCCACGGCCCGCGGGGCGGCACGGTCGCCCCTGCCCCCGCAGGGATGAACCCGAGCCCGCCCGGGCCGCCGACGGTGAAACGGCGTCGCCCCTGCCCCCGCAGGGATGACCCCGCCGCACGGGGCGGGTCCGCAGCCCGCCCATGCTCCCTTTTTCCACGGACAGGAGGTCCCTCGACATGCTCAAAGGCCGGCTGGGCCTGGATGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGCCCCTGCCCCCGCAGGGATGAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.50,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 5 3436872-3435440 **** Predicted by CRISPRDetect 2.4 *** >NC_011420.2 Rhodospirillum centenum SW, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3436871 29 96.6 32 ............................G GCGGGTGTTTTTCATGCCGTGCGCCGCTAAGG 3436810 29 100.0 32 ............................. CGCCGGAGGTCGTGTTCGGTCCGGGCCAGATC 3436749 29 100.0 32 ............................. TCGTTCCTGGACGCCATGGAGGGCGACCGATG 3436688 29 100.0 32 ............................. GCAGGCGCTGAGGCTGTCGCACAACAGATCCG 3436627 29 100.0 32 ............................. CAGGTCGCGGTGCTGGAGGCGGACGACGCCGA 3436566 29 100.0 32 ............................. GATCATCGCCCGCGCGGCCGAACGCGCCGGCT 3436505 29 100.0 32 ............................. AGGGTCCGGCCATCCTGGTCGATGACCGTGAT 3436444 29 100.0 32 ............................. TGGTCGTCCCGCGGGACAGTGGGTTTGTTTGA 3436383 29 100.0 32 ............................. TGGTGGGGGCGTGAGGCGCGGCCGGGCTCGGG 3436322 29 100.0 32 ............................. TGACTGACGCCGCGAAGGTCCGGGAGTGGTTC 3436261 29 100.0 32 ............................. CTGCGACAGGTCACCTATGAGGACGTGCTCGC 3436200 29 100.0 32 ............................. TTCGCCGGGCGCAAGCAGTTCGAGACGCGCAG 3436139 29 100.0 32 ............................. TGCTCCTGGGTGATGCCGCGGTCGAAGATCCA 3436078 29 100.0 32 ............................. CTGAAGCCTGCGGTATGCGCGCTGCCGAGACC 3436017 29 100.0 32 ............................. ATGGCCGGCGTAAGCCCCACCGGCACCAGCTT 3435956 29 96.6 32 ............................G ACGGCGGGGCTGCGGCCATGGACACGTCCTGC 3435895 29 100.0 32 ............................. CCGACAGTCAGCACCTCCGACCGCTCCACGAG 3435834 29 100.0 32 ............................. GCGAAGAGCTGGATCTACGGCGTCACCATGGA 3435773 29 100.0 32 ............................. ACCGGCGCCATGAAGGCCATCGCCAAGGAACT 3435712 29 100.0 32 ............................. AGGATGCGCGGGGTGACGCCGGTCAGGGTGGC 3435651 29 100.0 32 ............................. GCCTGCGACGAGACGGACCGATACCCCGAGGA 3435590 29 100.0 32 ............................. TGTACAGGCACCGGGCGCGGCCAGAGCAGGGT 3435529 29 100.0 32 ............................. TGGTGTCCGGCCTGATTGAGGAAATGCCGGAT 3435468 29 96.6 0 ........................C.... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTCGCCCCTGCCCCCGCAGGGATGAACCC # Left flank : GACCCGCAGGCCTTCCGCGCCACGCTGGTCCAGGGTCTGGGCGCCGGTCGCGCCTATGGCAACGGCCTGATGCAGATCGCCCCCGCCCGCTGATCCCCGCCGCCTGTCCGCCGGGCGCTGCCCGACGGCAGGGGGACGGGGCACGGCGCGCGCGGGCACCGGGTCCTGGACATCGTGAATACCGACCCTCCGCCGCCCGGCCGATCCCCGCCGGGCGGCGGCCCCCGGGTGATGATCCGGGGGTGATGGCCTGGGGTTGATGGCCTGGGGGTGATGGCCTGGGGGTGATGGCCTGGGGGCATTGCCCGTCGCGGTTCGGCAGGGAAAGAAACAACCAGGACCAGACCCCGGCAAAGACTTCCATCCCCGCTCCCCGGACCGGGACCCCGACCTCCCGACAGCGCTCATGACTTGCCAGACTTGCAGAACCCGGGACAAGGGGATAGAACAGGCAAGACTTCCTTTGAAAGTTTGTTCTGGACCAACCCCTTGCCGCCACA # Right flank : TGGGGCCGATCGCCGGAGCCGACGCCGCGCCCGACGCCGAGGCCGAGCCGGGCCACTTGGCCGGGGGTAGGCAGGCGCGGATCGTCTGGGCCCACGCCCCGCGTGACTTCGTGGATGTAGGCGTCGCGGATCGCCGGCCGGCCAGCCAGCGCGCCGGTACGGCCGCTGCCCAGATCCTCCAGGAGATCCCGGTGGGGGGTCAGTCGCTCAGGGGATAGGTCCTGCGGGCCGACAGCGTGCCCACGATCTCCAACGGGGGCCCATCCGCCGATGAATTCCCCGGCGAGGTGTGCGTAGCGCTCCTCGCCGAGCCGGCGGGGTGGATAGAGACCCTCGTCCAGTCGATACCGTTCGTCGATCCAGCCGGCGTCCTGGCGGAAGAACCGTCCGTATTGTCCGTCATCGACCCGTCCCTCCCGCAGGTTCAGATGGGCGGCCTCGTGCCCCAGGATATTGTAGGGGTTGGGGGCTGAGGCCGCAATGACAAGGAAATGGCCGCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTGCCCCCGCAGGGATGAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 6 3607001-3609077 **** Predicted by CRISPRDetect 2.4 *** >NC_011420.2 Rhodospirillum centenum SW, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 3607001 36 100.0 39 .................................... GAGCACCTCCTCCATCTCGTCACGTCGCCAACGGTCGAT 3607076 36 100.0 39 .................................... GCCACCTCGGCAAGCGCCACCAGCGTTTCCGCATCCAGT 3607151 36 100.0 41 .................................... GCGGTTGGTCCAACGTGCGTTACACCCATCGTTACGCCACT 3607228 36 100.0 44 .................................... ATGCTGGACGATTTCGCGCTCTTCCTCGTCGGTATCATAAAAGT 3607308 36 100.0 41 .................................... GTCGTCGAGGTCGATGTCGTCCTCGGGATGGAGCCACCAGT 3607385 36 100.0 38 .................................... AGGAGCGCCGCGCCGAGCTACGATGATTGACGCTCGCT 3607459 36 100.0 40 .................................... GAGGTTGGCCTCCACGGTCAACGTGTCGAAGGTGAGCTTT 3607535 36 100.0 42 .................................... CATCGCGGCTTGCGTCGGAACGTCCGGTCTGCTAAGAAAACT 3607613 36 100.0 40 .................................... CCGGTCGGGTTCCTCTTCCATCAACTCAAGCAGAGCCGCT 3607689 36 100.0 40 .................................... TCCCCAGCCGTCACGACGGTGCCGCCGTCCGCGGGTGTTT 3607765 36 100.0 38 .................................... GCGGGCGAGCCCCCGCCGAAGAAACCGACGGTGATATC 3607839 36 100.0 39 .................................... CCAAGGGACGCGAGAGCAATAACGGAGTGGTGCGGGGAC 3607914 36 100.0 38 .................................... AATATTCATGCTCGCTGACACATAAGAATTGCCGTCAA 3607988 36 100.0 38 .................................... CACGTGCGGCGGACGCCATTACCCGAATGGCGGGCGAC 3608062 36 100.0 38 .................................... GCGGGCGCAGGGTGTGAGCGTCAGTCCGCGGTCCGCAG 3608136 36 100.0 39 .................................... TCCTCTCGGAGATGCGCTCCAAGGGGCTGGACTTCGCCG 3608211 36 100.0 40 .................................... CCGTACTCCAGTACGGCATCCTGATTGAAACGGATGCTGT 3608287 36 100.0 43 .................................... GGTGCGGACGACGACCATCCTGCCGATCATGTCCAGACCGAGT 3608366 36 100.0 38 .................................... TCGCGCCGCTCGCCACCATCGTGATGTCACGACCAAAT 3608440 36 100.0 43 .................................... CCGCGGCGATGCGCGTGCCGTCGGCTTTGGCGGCGTCCAGCGT 3608519 36 100.0 39 .................................... AGGTGCTGCCCCGTCGTGAGGCACGCGACGGCAATCGCT 3608594 36 100.0 38 .................................... AGGGCGTCCCCGACGCCCAGAGCCGCAACCGGGACGCT 3608668 36 100.0 38 .................................... ACCCCGCTTCCTTTAGCCGCTGAAACAGTCCAGCCGGT 3608742 36 100.0 40 .................................... TTGAGCATGTCGGAGACGCATCCGTTTTCGAGCATGCAGT 3608818 36 100.0 39 .................................... AGGACGCGGGCCGAGGCGAAGGGGTCGGCCGTACAGAAC 3608893 36 100.0 38 .................................... GACGAACGACGCGTACCGCCCGCACGGGGAAATGGTGT 3608967 36 100.0 39 .................................... ACAGCGGGGCCATCCTCTCTATGTAGCTTGCCATTCAAC 3609042 36 83.3 0 ....................T.......GGA..GG. | ========== ====== ====== ====== ==================================== ============================================ ================== 28 36 99.4 40 CCGCAGCCCTCTCCCCGCTACCGAGGGGACTGAAAC # Left flank : CTACGTCGTCTCCTATGACATCATCGACAACAGGCGCCGCGTGAAGGTGTCCAACTGCCTGGACAGCTATGGCCAGCGGGTCCAGAAGAGCGTGTTCGAGGTGCTGATCTCCAAACAGCTCCATGCCCGCATGATCCGCGAACTGACCGCTCTGATCGACGCCGGACAGGATCGGATCAGCATCTATCCCCAGTGCGGCAGTTGTGATGCCCGCCGCGTCGATCTGGGGGTTGCGCCGGACAAGCCCGTACACCAGAATTGGATCATCGTCTGATCCTCAAGGAAACGGACGGTCGGCAGGCAAGGGGAATCGTAACCGCTGTGGCATGCCAGGGCCGGGGGGGCTCACGATTCGGGCCAGGGTCTTGAAACTGTGAAGAAAAAAACCTTCTTCCCGCGCCGACGGCGGCTGAAGAGGTGGGCTGCGGGCCGGGCGCCGGGCCGGTTACGAGAAACCGCCGGCCATGCCTTTGCTCCACTTTGTCTTTTCAGGGCTGCTT # Right flank : CGCGGGCGGTTCGTTCTTGCGGGGATGGAGGGCGCGGGGGTCACTCCAGGGGCTGGATGAGCACCTGCCCCAGCCCGAACACCGTGGCCTTGCCCAGATGCACCCAGCCGAGCGCGGCCAGCAGGGGCCAGAGCGGCCCCGGTCCCTCCGGCAGGTCGAGCGAGCCTGTCACCCCGTGCAGGTCCAGTTCGCCCTGGTTCGCGGAATACCGGTGCAGGTGGGCCGGGCTGCCCCGCCATCGGCCGGCCGGCAGCGCCCGCGCCCAGGCGAGCGCCGGCCCGTTCAGGGCGGACAGTGCCGCGCCTCCGTTCCCGGCCGTGGCCCCGGCCAGCCGGGACAGCCGCCGCAGACCGACCGCCACGATGTCCGGCAGGGTGGGCTGGTCGATCAGCCGCCCCCGGCGCAGCATCCGCACCGGCACATCGAAGACCAGACGGCAGGGCAGCCCGGCCGTGGCCTCCCCTGCCGTGCCCAGGGGCCAGACCACCTGATCCAGGCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCAGCCCTCTCCCCGCTACCGAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //