Array 1 99105-98404 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHHT01000001.1 Escherichia coli strain EC_67 NODE_1_length_317688_cov_26.180058, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 99104 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 99043 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 98982 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 98921 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 98860 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 98799 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 98738 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 98677 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 98616 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 98554 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 98493 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 98432 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116465-114606 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHHT01000001.1 Escherichia coli strain EC_67 NODE_1_length_317688_cov_26.180058, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116464 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 116403 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 116342 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 116281 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 116220 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 116159 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 116098 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 116037 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 115976 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 115915 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 115854 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 115793 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 115732 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 115671 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 115610 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 115549 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 115488 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 115427 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 115366 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 115305 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 115244 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 115183 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 115122 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 115061 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 115000 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 114939 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 114878 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 114817 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 114756 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 114695 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 114634 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //