Array 1 76961-76051 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHKG010000023.1 Paenibacillus sp. JGP012 Ga0314267_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 76960 33 100.0 32 ................................. TCTCTCTTTCTTAATAGCGTAATATAGGATCA 76895 33 100.0 33 ................................. CCATTTCGCCACTGAACGTTCCAGATCGGTTAC 76829 33 100.0 34 ................................. ATTTAATGCAATTATACCAACTACTCAGCGGCAA 76762 33 100.0 36 ................................. ATAAATACGTCATACAGCCATCCGAAGAGATTCAAC 76693 33 100.0 34 ................................. TTTATCTGCTGATCCCTGACGACACATATCCTCA 76626 33 100.0 34 ................................. CAGTTACGTCCACGGAGCGCCTGGCCCGTTGATG 76559 33 100.0 36 ................................. CCCAAAGGTGTAACGCCTTCGCCTACACCACCACAA 76490 33 100.0 35 ................................. GCAGCTCATTCATAGACCGAGCGTTGCTCTCTATC 76422 33 100.0 36 ................................. AGATATGGCCGGGCTCCTTTGTTTTTGGCCAAGTAC 76353 33 100.0 35 ................................. CGAAGTATGATCGCCGGGACGCACCCGAAGGAACC 76285 33 97.0 35 ....................C............ AATAAAAAGAATGATAAAGAATTTTGTTGTATGCA 76217 33 97.0 34 ....................C............ TGTCAAGAAACGTTGAAGAACAATAAGAAAGTAA 76150 33 93.9 35 ....................C...A........ TCCTTTGGTGGGCCTAGCCTAGATATGATTTAAAG 76082 32 69.7 0 ..T.......TC......C.C...C-..C..CC | ========== ====== ====== ====== ================================= ==================================== ================== 14 33 97.0 35 GTCGCACTCCGTATGGAGTGTGTGGATTGAAAT # Left flank : ATTTTTGTGGAAGTAGGTGTGAAATTTGCTTGTTCTGATTACCTATGATGTGAGCACGATGGATCGTGAAGGTCGAAGAAGATTGTCCCGAGTTGCAAAAAAATGTGTGGATCACGGTCAACGTGTGCAGAACTCTGTTTTTGAGTGTATTTTAGACGCTGCACAATTCAGACGTTTACGATATGAACTAGAGGAACTGATTGATAAGGATACAGATAGCTTGCGATTTTATAATCTCGGCGACAATTATAAGAGCAAAGTAGATCATGTGGGAGCAAAAGATACCTATGATATGGGTGATCCGTTGATCTTGTAGCTGGTGCGAATGCCAAGCTCACATGATTTTCCCGGGGGATTCGCACCTCGAAAAGCGCTTTTTTGTGACCTTTTGGCAACAGATTGGAGTTATAATCGATATTTAGAAGGTTAGTAAAAAGAAATAAAAGCGAAGATACGTTTGTTATTTATCATTTGATATGGTATCTACGTTATTTTTCGCT # Right flank : CGGTATATTTATTCTGATCCAGGCTAGGAAGCTAGCGACACATTATCGAATATATTGAACATCACCATAGGAATGCTGATCAGTGAACTTTACTCTGGCAAAATCCCTGTCAAGAGACTCGGAAAGGTGCTGAATAACGACATATGAATAACGATATAAAGCAACTCCTTGCTGCAATCGCTCTGGAACAGTATGTGGTGGAGGGGACGTTCCAACAATGTTTACCCGCCGATGGGCAGATTACACTGGGGCAGGCTAAAGCACAGGCGGATGAAATATGGAGCGTAGAAAAGGAACGGTTAGAAGTCATTAGCTTTGATTACGAGGGGTACACAGTGAATCTGACCTTCCAGATGGATGGGCTGTATTTGTTCGATAGTGTGGATATTTGGGCCGAAGAGGGAGATGGAACGAAGAAAGGTTCATCTCAGCTAGGTACACTAGCAACAATAGAGGGATGGCAGCATTTTGCGGATAACGAGGGAATGCAGATGGAGTGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 87567-88533 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHKG010000022.1 Paenibacillus sp. JGP012 Ga0314267_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 87567 33 100.0 34 ................................. CTGGAGGTCTCGCGCTTGGAGAAGCCGCGTTTTA 87634 33 100.0 34 ................................. AGGCTACCAAGCTTGAGTTTCGCCTGCAAATCCA 87701 33 100.0 35 ................................. CATGTACCGGGTTCGGAAGGATTAGCCGCAATATC 87769 33 100.0 34 ................................. CTTCTTGCTGGTTCCTGACTGGTCATCCTTAAAC 87836 33 100.0 34 ................................. CAGCCATTCGACAACTAGCCTGAATTTATCCTCC 87903 33 100.0 34 ................................. TTCAGAGAGGTGGTGGTAACACATGGCGAGTATT 87970 33 100.0 35 ................................. AGTGAACATGTTCATTCGCTCCTTTTGGTTTGGTA 88038 33 100.0 35 ................................. ACTTAGGCTCATGTCATATCACCCACCACCATATT 88106 33 100.0 33 ................................. GACCGTAGGCGTAGCAGGAGCGCTTGTAACAGC 88172 33 100.0 36 ................................. CGCAACTGATCGGATGACTGGCGCAAATTTATCCCC 88241 33 100.0 35 ................................. GCAGCTCACAGTTAAATTGTCTAATACAGGAACGA 88309 33 93.9 36 ....................TT........... TGAGATAGCCAAGTGCAACGGGCTATTTTTCATGTA 88378 33 90.9 35 ........T......A....T............ ACATCTTGTGCCTTGGCCTGCATGACAGATGCAAC 88446 33 87.9 22 .........T.......A..T..T......... AGAATCCAGTAAAATGCATGGC Deletion [88501] 88501 33 87.9 0 .........T.....A...A......C...... | ========== ====== ====== ====== ================================= ==================================== ================== 15 33 97.4 34 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Left flank : GTCACTTGGTCGTTATTTAATGTAGCATTTGAGGAAGATGTTGGATGTGATGTTTGTCATAGTGAAAGAGAAGGAGGGGGAACCATCACGCTAACGATCCCACAGAACCTTATTTTGCAACCTGAGTGAAGTTTTAAAATCTAACGATCCCCAGAAGCGCTATTGTAGTTCAAACCTCAAAAATGTGGCACAAAACGCGTCATTTCAAGTAAATAAGGTTTCTGGAGATCGTTAGAATATGAGAATGCCCAAAATGGGCCAAATAGCGTCGCTGTGAATCGTTAGGTTCCTGAGATCAAGCTTGCTCGTGGTGCGAACCCCAAGCTCACATGATTTTCCTGAGGGATTCGCACCAAAAATTGCTCTTTTCATTCCCTTTTGGCAACGTTTTTGTTGAATTATTTGATTGCTTTGTATAAAATTAGGGGGAATCAAGGTAAGAAGTTGCGGAATTACGAAATATTTTCGTTGGAGAAAATGTTTATACGTTATTTTTCGCT # Right flank : TGATGCAATGGGCTGCTTGGGTTGTTACCCTGGTCGCACTCCATATGGACTGATCGAAATATTTGTTGTGGTTGCTTACTTGGAAGGGAAGTAATTTAAAAAAATAAAAAAGATGCTCGTCCGAGCATCTATACACTGGTATGATTTATAATGTACAGCCAATTTGTGGTGGGAAATGGCCATCTCCTGAAAGGAGGTGATCGCATGAACTTTACTATCGAACAAGTGATGCTTATAGCAATGTTGGTAATCGCGTTGCTGACATACACTGATCGTAAGAACAGGTGACCCACCACAGGTTGACCGCCAGAGGTAGGGTCACTTCACTTTGAATGAGCACCACTCATAGGTGATCACACCATATAAGCTGTGCAGGGGTAGCCATTGGCGTGGCTACTCTTTTTTTTCTTGCTTTCATTTTATTAAACATCTTTACCGCATACAACCCCTACATACATATATTTATTCTTATGAAGTGAAAAGGCTCCTCGGAAAAGTTA # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 2 90149-90652 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHKG010000022.1 Paenibacillus sp. JGP012 Ga0314267_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 90149 32 100.0 34 ................................ CTTTACGTTTATCGCTGGTATCAGACCAAGCTAA 90215 32 100.0 35 ................................ GCTGCCTTCGTCTGGATTAGCGCAAAGATAGAACG 90282 32 100.0 35 ................................ TTCGTGGCTCATCGGATCAAAGGACTTTTCCAGTA 90349 32 100.0 35 ................................ CAGCGTGGTCAGGTTGTAAATGTCGCTCCAGAGCA 90416 32 100.0 36 ................................ GTTTGACCAGTTTTTAGATGTTGCGCAGCAGCCGTC 90484 32 100.0 35 ................................ CTTGTGATGTAATTCAATTCGATGACCATGTTCAA 90551 32 100.0 38 ................................ GATATAGGCTAAATCGATAATTAAATATGTAAAATCAT 90621 32 87.5 0 ..............A........A.A....C. | ========== ====== ====== ====== ================================ ====================================== ================== 8 32 98.4 36 GTCGCACTCTACACGAGTGCGTGGATTGAAAT # Left flank : ATGAATGTTATTTCATTTTTCTTGAAGAGAGTTCTGGAGTGCTATGGCTTCGTCATGTGTGTAAGGTGGAACATATAGATAATTTATACATAAACGGAGATGGAGGAGGGATTATGCTGATTGAGCAAACACGAGGAGATATCACAGAGATAGTCCAAAGGATCGTTGATCGTTTATCTGGAATGGATGCTCTTACATTTCTAACAGATGTATTGTTGTGGACTCCAGAACGGGTAGATATGAGCTTGAAACTGGATCGTTTTCAATAGGAATCTAGTAAATTTTTCTAAATGAGTTCAAATACGACGGGTGCGAATGCTAAGCTCACACGATTTTCCTGGGGGATTCGCACCAAAAATCGCTCTTCTCATTCCCTTTTGGCAACATATTTGTTGAATTAATTGATTGTTTTGTATAAAATCAGTGTGAAATCTTGTTTAGAAAGTGCGGAATTACGGAACATTTTCGTTTGTTGAAATGTTTATACGTTATTTTTCGCT # Right flank : AAAATCCCAAAAAGACATATCTCATTAAACGGAGGCCACTGAAAAAGTCCATTCCATGTTAAAGGTACAGCTCTCAAGAAAATTGTGGAGACTGTACCTTTTTCGCTTATAATTAAAGTATCATGG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACACGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //