Array 1 155735-155217 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLH01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain 244 NODE_3_length_261811_cov_9.07516, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 155734 29 100.0 32 ............................. GACCAGGACTGGAGTGATCAGATCGGTGTGGT 155673 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 155612 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 155551 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 155490 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 155429 29 96.6 32 .............C............... GACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 155368 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 155307 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 155246 29 93.1 0 ............TC............... | A [155219] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTTGCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 173252-172004 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLH01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain 244 NODE_3_length_261811_cov_9.07516, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 173251 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 173190 29 96.6 32 ......................A...... CCGAGTGGGGGCAGGCTATTTATGATGAGCGC 173129 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 173068 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 173007 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 172946 29 96.6 32 .G........................... GTAATCAATCTCATATAGAGCGGGGGGGGGAT 172885 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 172824 29 96.6 32 ........................T.... TAATACCCGATCGAGCGCACTGTGTCGCCGGA 172763 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 172702 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 172641 29 100.0 32 ............................. AGCGCGGAATGACTTTTAACGCTGAGATGGTG 172580 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 172519 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 172458 29 96.6 32 ..........G.................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 172397 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 172336 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 172275 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 172214 29 93.1 31 .............TC.............. TTTTTAAATCCGGACAGACCCTGTAACGGAT 172154 29 89.7 32 CG.......................C... ATCCGACTGTATGCCCAGCAGAACGAGGGCGC C [172151] 172092 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 172031 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 97.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTAGCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAACCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGTTAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //