Array 1 17536-19903 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH967383.1 Vibrio cholerae HC-59A1 vcoHC59A1.contig.119, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17536 28 100.0 32 ............................ ATCGTCGTTTATTACGTAGGTCGTTGGCAAGA 17596 28 100.0 32 ............................ AACAAATACAGTCTCAATCTAACATTCTTCGG 17656 28 100.0 33 ............................ ACGAAAAGGTAAAGTTGCTAGCGGACAATGTTC 17717 28 100.0 32 ............................ TGTAAGCCCCATCGATAACATCGATGTGTTCC 17777 28 100.0 32 ............................ ATTACGACCGTTGGCCAGATGACATTGATGGT 17837 28 100.0 32 ............................ ACAGCAAGCCACGCTAGCCGGGGTGAGTGAAG 17897 28 100.0 32 ............................ ACCATGATTATGGCAAGGACAGCTACTATTCC 17957 28 100.0 32 ............................ AAGCAGCTTTAGCACTCGCAGAAGTTCGCTTG 18017 28 100.0 32 ............................ TTAAGCAACACACCTATAATTAAAAAATAGTT 18077 28 100.0 32 ............................ GGCAGATTCGAGCGCACCCCAGAAAAACTTAT 18137 28 100.0 32 ............................ CTTACGAGCACCACCATGAGAATGATTAGTGT 18197 28 100.0 31 ............................ TTAAATGCAAATGCCCGTTACTTACTGCGGT 18256 28 100.0 32 ............................ GCTTTGATAGCAACCGTTATGTCCATGCCCTT 18316 28 100.0 32 ............................ CTATAGATAACGGGTAAAACGCTTGGAAAAAC 18376 28 100.0 32 ............................ GCTTTCAGTCTCGCCACTCTCTCAGCTACCCA 18436 28 100.0 32 ............................ CATAAGCTTCAAAGCTTCGGTTTGATTCTTAC 18496 28 100.0 32 ............................ AGAGGAGGCGTTTGCCGAGCTGGGCGTAAATG 18556 28 100.0 32 ............................ ATATAGATCCGGTTGTGTTTGTTGCCTAGTGA 18616 28 100.0 32 ............................ AACAACGCAAACCATCACAACAGAGCAGGTAT 18676 28 100.0 32 ............................ CCTACCTTCTTGTATTCTGGAATTAAGTCATG 18736 28 100.0 32 ............................ ACTTGAAGAGGAGCTTATTGAGAAGCGCCATT 18796 28 100.0 32 ............................ AAATATACAAAGTCGTTCCTGTTTTGTTCTGT 18856 28 100.0 32 ............................ ATCCTCTAAATTTTCAACCGTTCCGTTATTAG 18916 28 100.0 32 ............................ GTTATATCGTTTGATGTTTGTCTCGACAGCTT 18976 28 100.0 32 ............................ AAAGCGATCAGAGTTTATGATGTGAACTTTTT 19036 28 100.0 32 ............................ TCGCTGAGCGATCACAAGAAACCAAAAACGAA 19096 28 96.4 32 ...........T................ TTAAGCGGATCCGTGGTAGTGGACTACCAAGC 19156 28 96.4 32 ...........T................ CAGAATCTTGCGGCTGTAAACATCAGCCCAGA 19216 28 96.4 32 ...........T................ CGCATCACCACAAGCTCTCTCTGTCTCTATAC 19276 28 96.4 32 ...........T................ TACCGCGTGACGCGTCACGCTAATTTTTGCGT 19336 28 96.4 32 ...........T................ ATCAGCAACAGCGCCGGGTATTCGCACTGCAC 19396 28 100.0 32 ............................ TGAGAGGGAATCAAGTTGTCTAGAGAATTAGA 19456 28 100.0 32 ............................ AAGAAGCGCGGTAGCCTGTAGCATTCATCATT 19516 28 96.4 32 ...........T................ TGAATCAATCACCGCAGCAAGGGCGGCTTTAG 19576 28 96.4 32 ...........T................ GTTTCTAAGGCTTGTCCTGCGCCCGACGTTGT 19636 28 96.4 32 ...........T................ ATTACTACTTTCTCGATGGTTCGTTGCTCAGC 19696 28 96.4 32 ........T................... AATACATGTTTGGCATCGCTAACCAGCTTTAT 19756 28 100.0 32 ............................ TTCTATGACATTCCCGCCATGAAGTAATTGAA 19816 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 19876 28 85.7 0 ..........AT.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 40 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //