Array 1 1118031-1116406 **** Predicted by CRISPRDetect 2.4 *** >NC_009380.1 Salinispora tropica CNB-440, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1118030 30 100.0 38 .............................. AACTGAACCTGGAGTAACCGATGGCCGACGATCTCCGG 1117962 30 100.0 39 .............................. ACCAACCTCGCCGGCACCGCCATCGACGCCGTGCAAGCG 1117893 30 100.0 33 .............................. GTTCGCAGGAGCCGGTGTCCTCCGACGCGCGGG 1117830 30 100.0 37 .............................. ACCGTCCCCGGTGCCCAGGTCCGGCCGCACCCAAGCA 1117763 30 100.0 38 .............................. CTGACTGCTGGATCACGCAGTCGACGCGCCAGACGCAA 1117695 30 100.0 33 .............................. GCGGAGTCGGCGGCGGAAAAGCCGGATCATGCG 1117632 30 100.0 38 .............................. AGTTTATCGAAGCCACCAACGCCATCGACGGATTTGGC 1117564 30 100.0 36 .............................. ACCCCGGCGGCATGCAGCACCACCGGTAGCTCCACG 1117498 30 100.0 37 .............................. GTCTCCCAGATCCGCCGGCCGGGGGTGTGGGGTGGCC 1117431 30 100.0 37 .............................. ATAGGAGCGGAGGTTGCCCAGTCCGCGGGAGAACCGG 1117364 30 100.0 39 .............................. GCGGTGGGACCGGGAAGAGCGCAAAGGGCAAGGGCACAG 1117295 30 100.0 36 .............................. GGCAGTACCCGCCGGACGGTCGGGCGTCGGGCACAG 1117229 30 100.0 39 .............................. GCGGTGGGACCGGGAAGAGCGCAAAGGGCAAGGGCACAG 1117160 30 100.0 33 .............................. CAGTCTCGATGACGTGGTCGGCATCTGCCTCGA 1117097 30 100.0 35 .............................. GCCGAGTGCGGCCGGTCTCCAACTGGTGCAGCAAA 1117032 30 100.0 36 .............................. CCGTCGGCATGGGCACCCTGCCGTTGACCTGCACCG 1116966 30 100.0 38 .............................. ACGTACAGGGCGGCGTGCGAGGTGCCCGAGGTGACCAC 1116898 30 100.0 39 .............................. GCGGCCCGAACCTCGCCCAGCTCGCCGCGCAGCTCCTGG 1116829 30 100.0 36 .............................. ACGGTACTCCCCGCCTGCACGTCACGCTGTCACCTC 1116763 30 100.0 35 .............................. GCATCCTGTTCGGTCACCGTGGCGTTCTCGGACGG 1116698 30 100.0 36 .............................. ACGAGGCGCGCAGCAGTAAGTGAGCCCCCCGCCGGT 1116632 30 100.0 36 .............................. GTTTCACCTGATTCTAGCTTCTCAGCGATGCTTTCA 1116566 30 100.0 35 .............................. CCGACAGCCGGTACACCGCGCTCAACCGGGGCTCG 1116501 30 100.0 36 .............................. AACCGGAAGGTGAGCAGCGGGGACTCCCACGCCCAC 1116435 30 93.3 0 ............................GT | ========== ====== ====== ====== ============================== ======================================= ================== 25 30 99.7 36 GTCGCTCATCACCCCTGGAGGGATCGCAAC # Left flank : GCGAAGAACTGGCCACCACCGTCCAGCATCGGCAACTCCGGCGAAAGGTGTCCTACGAGGAGTTGATCCACCTGGAGGCCCTCAAGCTCGTACGACTATGCCTCGAAGGCACGACCTACAAGCCCTTCCGGCCCTGGTGGTAGCGCGATGTTCGTCGTCCTGGTATACGACACGGCCGTCGAACGTAACCCCGCCGCGCTCCGCACCTGTCGGCAATACCTGCACTGGGTCCAGCGCAGCGTCTTCGAGGGTGAACTCTCCACCGCGCAGCATCGCAGCCTCATCACCAGCCTCCGCCAGCAACTGGACCTGGCCTACGACAGCGTCCGGATCTACCGGATCGGCTCGCCACACCTCGTCGAGGTCGAGACCCTCGGCGCTGAACTAGGCCACCCAGATTCGGTACTCTGACCTGCACAGATGCACAACCGCCGGACCGCTGCAAAATCCGACAGGACCGAGCCCGGAAAGACGGCCGTGACCTGCGACTTAAGGTTCGG # Right flank : CGAAGCCGCGCGCCGGGGGATGGAGGCCGTTCGCCGAGAGCGACGTGGGGGCTGACTCCGAGTGGCCACTTTGGGTAGGGTCTGCGCGAGTAGCCGTGTTCGGTGGGCTGGGGGACGTGCGTTGGAGTCGGTGGCGTCAGCGTTCGGTCGGGCGGTGGCGGCGCACCGGGAGGCCGTCTCCCACGTTGAGGCTGCCCGGGCGAGATTGCGCGACCGCAGCGCGGGAGATGGTGTCTCGGCGCAGTCCCGGGAGGAAGCACAACGTTTCGCCGCCCGGATGCAGCGGCTCGCCGAGGGGCTGACGCCCGGTTGGCTCGGTTGCCGGCTGGACGGGCCGGCTGCGGATCTTCCCACCGGCGTTGACGCGGCGCTTGGGCGTCCGATGCCGATTCGCCTGGGCGACACGACGCCGGTGGCGGGCAGCGGGTTCAGCGTCGTGGCGCCGTTCGTGGGTGCCGGTCACCTGGCCATCGACAGTGACGCCCGCGATCCGGCGGTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCATCACCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 1140294-1140654 **** Predicted by CRISPRDetect 2.4 *** >NC_009380.1 Salinispora tropica CNB-440, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1140294 31 100.0 33 ............................... ACCGCCGACAACGGCGCCTGGACCGTCGACCCA 1140358 31 100.0 36 ............................... TTCGGCCGGGCGAGGAGCACGATCACCGGCAGGTCC 1140425 31 100.0 37 ............................... AACTGGTCGGGGAGTGAGCAGTCACATCCGCAGTGCG 1140493 31 100.0 36 ............................... CAGCACCTGCCGGCAGGTGGATGATGACGCCCCAGT 1140560 30 80.6 34 C...C......-T................GT GGGGTGCAACCGGGGTGGGGTTGCAGCCCCGGCC 1140624 31 90.3 0 A...........T................T. | ========== ====== ====== ====== =============================== ===================================== ================== 6 31 95.1 35 GGTCGCTCATCACCCCTGGAGGGATCGCAAC # Left flank : CGGTGGCTGCGGCTGCCGAACGCGGTTTCGGAGATCCCGGCCGTGCGGACAGCCTGTTACGCCTACAAGAGAAGATCATCGGCGATATTGGCCAGGCCCTCGCCCAGCGGGACGCCATGCCGAATCGGGTTCCGTCCGCCCGAACCGCTCCGACGGCTGAAGGCGGCGCCCCGAGCCCAAACCCAGTCCATCATTGTCCTGACCTGCCATGAGCACTAACGCGGCAGCTGTCAATATTTATACTTTTGCTTCGAGTGATGACTGGCGCGTCGCCCGACGATGGCTAGCGGTCGTTAGTCCGCGGTGCAGTCTGTCGGTGCGCGCGCTCGTCGAGGCGACTCAGTCGATCATTGGTGATCGATCAGGTGGTTGAGCTTCGGTGCTATCCGGTAGCCCGGATCCGGTACTCTGACCTGCGCAGATGCACAACCGGCGGACTGCTGCAAACTCTGCCGAATCCAGGCCCCGGAGAGCGGCTGTGACCTGCGACTTAAGGTTCA # Right flank : CGCAGCAGTCCCATCGGGTCATCTTGTGCTTGCCCCTCACGTAGCGGCATGTCACATAGTCGATGTCGTGGAGGATCACCTGACTGTGGGGCAAGCGGCCGGGCTGGCTGGCGTAACCGTCCGCGCACTGCATCACTACGACGAGATCGGCCTCCTGCGGCCGTCCACGCGGACCGTGGCGGGACACCGGGCCTACTCGGCGGGCGACGTGGAGCGACTGCGGGAGGTGCTCGCGTACCGGAGGCTCGGTTTCGGGCTGCGGGAGATCGCGGACCTGGTCAACGATCCGACCACCGACGCGGTCGCGCACCTGCGTCGGCTGCGTGGGCTGCTGCTGGACCAACGCGACCGCGCCGCCGCCACGGTGACGGCCATTGACCGGGAATTGGAGGCACGGGCAATGGGAGTCAGGACGACGCCAGCGGAACAGTTGAAAGTGTTCGGTGCGCAGTTGTACGACACGATCGGATCCGCCTATCCAACGACGCGGCGTACCGAGC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGCTCATCACCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 2238484-2237966 **** Predicted by CRISPRDetect 2.4 *** >NC_009380.1 Salinispora tropica CNB-440, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2238483 30 100.0 31 .............................. GGGCGTTGCTCGCCCATGGGGACATTAGCCA 2238422 30 100.0 31 .............................. CACCGTCGAACCCGGTGACAGCCGCGGCGCG 2238361 30 100.0 31 .............................. CACCGTCGAACCCGGTGACAGCCGCGGCGCG 2238300 30 93.3 31 ...........G.................G CGTGCGACGGCTGCCCGGTGAAGGCCGAGGC 2238239 30 90.0 31 ...........G................CA TGGCGGACACCGCCGTGGCGGTGCTACGTGC 2238178 30 96.7 31 .............................C TGGGTGTAGTGGTCGCTCGTCATCGGGCCAC 2238117 30 93.3 31 ...........G.................G CGTGCGACGGCTGCCCGGTGAAGGCCGAGGC 2238056 30 90.0 31 ..........TG.................C CGGGGACGGTGATCGGTGTCCGGTCGGCACA 2237995 30 83.3 0 ...........G.............CGT.G | ========== ====== ====== ====== ============================== =============================== ================== 9 30 94.1 31 GTCCTCCCCACACACGTGGGGGTGCTCCGT # Left flank : CGGAGCGCCCACGCCCGGAGGCGCACTGGCCGCAACCCCGCGACCGCCGGCAGTTCGCCGACGGGGCTGGCGTGCGCTCCCTTACGCCGCGTGGGCATGTGGCCGCGCGGCCAGGCCGGCTGCCGGCCACCCCTCACCCGTCAACGGTCTGTCGTTCTGCGGCGGCCCCCGGGCTTCCCGCTGTCCGCGCCAGCTGCCGGGCGTCAGGCGTGACGGCCGCAGAGCGACAGCGGCCGGCGTGTGCCCAGGCGGCGGCGAGTGCGGCCCGTTGCGGGCCGCCTTGAAAGATCGATCAAATGCCAGAGCACCGGATACGGCCTCAGAAGACGATTAGACTTACCCCAGATCCCAACATCGGCCCCATCCTGATCGACCCCTATCCAACCGCCTCCATTCGTCTCCGCTCGCAAGGCATCAGCATGCAACCACAGCCATACGACACCACGACCCGCCCGACGCAAAACCGCTCCCAAGGCGGATAAACACGCAGGTCGCAAAGT # Right flank : TCATGGATGTCTTCGCCGGCCGGGCTCCTACCCACCACGACCCAGGTCACCGTTATCACCACTGTGCTGGGCTGCGTACCCGAGACCGCGGAACACCTCGCCGCCGCTGCCGGCGGCACCAGCGCCCTCGACGAGAGCTTCTGGGGCATCGCCGAAGCCGTTGACGCGCGCCCACCAGACATGTTTCGTAATCAGTAAGCGCCGGAGGTGGCCGGCCTGGCATAGCCGCACACGTCGTACACCCAGTAGTTCAGATACCTGGCCACGGCCGCGCGGTCGGCAAGGTCCAGCGATAGCCACTCCCGTGCCGCCCGAACCATTTCAGCTGCGGCTTGTTCCGTCTCGTCAGGCTTGAAGCTCTACCCAGTCGGTAAGTGTGCCCCAGATGAGCCACACGAAGCCGGCCGGCTCCACCTCCGTCGACGCATGCGCCGACAACCCATGGATCCCGATCCCCACCTCGTATGGGTCGTCAGTGGCGACAAGCTCCTCGGCCAACG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACACACGTGGGGGTGCTCCGT # Alternate repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //