Array 1 1721-1025 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYI01000010.1 Alloprevotella sp. OH1205_COT-284 scaffold_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1720 36 100.0 30 .................................... AGAATAAGAGTTAAAGTAAATCAACCCCCC 1654 36 100.0 30 .................................... GTACTGATTCCAAGATATAAGCGTTACTTA 1588 36 100.0 30 .................................... TAGTTTAGTGTTGGTTAATGTTTAATTATT 1522 36 100.0 30 .................................... GGTCTACAAGTAAATACCCTCTTGGAGAAT 1456 36 97.2 30 ..........................G......... TATTGCTTGAAAAATCTCGTAAGCGACTTG 1390 36 97.2 30 .......A............................ GCATCAAAGGTGATGAATATGCGAGTTATC 1324 36 100.0 30 .................................... AATAAGTTTCTTTTTTTCTTTCATATTGTT 1258 36 100.0 30 .................................... ACTCATCTGTAACCCCAAATAGAGCCGCCA 1192 36 100.0 30 .................................... TAGTTCTTCTATCGTTTTCATAATTTTATA 1126 36 100.0 30 .................................... TACAGCAGATGGAGCAAAAATCAAAGGATA 1060 36 94.4 0 .......................A....T....... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 99.0 30 GTTGTCAGTGCCCCGTTTTTGAGGGGTCGAAACAAC # Left flank : AAATGGAAAAGTTTTTCATCCTCCAAGAGAAATTGCGCCCGAAGCCGGGACGAAACAATATTGTTTACAAAAAAATAACACCACTGAAAACTCTATTAGAGGAAATAGAGCAAGAGCAAAAAATCGAAAAGTTTGATAACAATGGAAATCGTCAAAGCAACATTATACGCAATGATGCTTGCCACTTCTCTTTCCCACAAAAACTTTATGATACGATACTTATAGAGTTGGAGAAGAAATTCATCAAAAAGTATGTTTCATCTCCTACTCCTCTGTCTTTCCAAGATTTTCCGGCTCCCATACGAAAAGTGTTAGACTATTTCTTAGAAAGTGTTCATAATTCTTTATTTCAATATAAAATAAAAAACAAAGAAGAAAGAATTGCTACTGCACAAAGAGAATATATCAATCAAGTCATCAAAAAATATATTCAGCCTCTGCAAAGAAGAATACACTAATAGCATGCAATATTATGATTGCAAGAACAAAAGAATAAGCAT # Right flank : AAGCGATAAGACGCTATTAAAAAAGAAGTAGCGTGCCACTTTGGTCAGTTCCAAGAGTGACACGCTGTTTCATTATGCGCGTTCCAACGCATAAAAATATAGTCGCTATTTTTCAAGAGACGAAAGGAAGGAAAGAGAGAAATATAGAAGAAGTTCCTTTTACAGATCTTCTTTCGGTTGGAATGAGAAGTGTCCGCTAAAAGTTATGGTCTGAAACTTTTAGCGGACACTCATCGTTGGCAACGCAGTTGTGGGAATAAGTCGTGCAAGGTTCAAAATGCGATAGATCTTTGAAGCTGCAATGTTCCATTGATAGCTCCGCAACCCGGCTTTCACCTCCGTTCTCACTCCCGACGACGGCGACGGCGCGCTGCCGATGAAACCGCCCTTTTTGAACGTTGATCTGCCCTATTTTTTTATTTTTGCCCTTTTGCCTTCGCAAAAACATCTTTTCGTCTGATTTTCAGCACGTTTGTTGCGAAGGCAAGTGAAGGCAAGCC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCAGTGCCCCGTTTTTGAGGGGTCGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.90,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 39330-42979 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYI01000021.1 Alloprevotella sp. OH1205_COT-284 scaffold_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 39330 47 100.0 30 ............................................... TAAGTTATGCAGGTAAGAAATATTTTTCTT 39407 47 100.0 30 ............................................... CATATGTCTAACGTTTTAATATTCATCTAC 39484 47 100.0 30 ............................................... ATGAAGCCGACAAGCCATTGGATAACGTCT 39561 47 100.0 30 ............................................... ATACGCCGTTATCGGATTAACCGAAAAAAT 39638 47 100.0 30 ............................................... TGTACATATTCTTACGTTTTAAGTTTTTGA 39715 47 100.0 30 ............................................... ATCTTTCTTTTATAGAGCTCATGAGTGTCA 39792 47 100.0 30 ............................................... AGACCCGATCCACGCCCAAGGTCTGCGCAT 39869 47 100.0 30 ............................................... GACATCTGGAAGTTGATGACCGAGTATTAC 39946 47 100.0 30 ............................................... TGAAAAACATTCACGGCATAGATCCGGATG 40023 47 100.0 29 ............................................... AATAGAGTGTTTTGTCAATCTATCTAATT 40099 47 100.0 29 ............................................... AGATTGAATTATCTTTTATAAGGATTTTT 40175 47 100.0 30 ............................................... GTAATTCTCCAATAAGTTTTTCTGAGTTCT 40252 47 100.0 30 ............................................... AGATTTACCGGAGGAGCTTATTAATCGACT 40329 47 100.0 30 ............................................... AATGCCTGAGTGAGGTCTTGCACGCCCCCC 40406 47 100.0 30 ............................................... TCACGAAGGTAAGACGCGATATACTCGTCA 40483 47 100.0 30 ............................................... CCTCCGTGCGCCATTTGCCCTTGCCATAGA 40560 47 100.0 30 ............................................... GGCTTTTGAACTTCACCAACCACTTTCTCA 40637 47 100.0 30 ............................................... TATTATGGGGTGGAGGAGACGGGAGTCGAA 40714 47 100.0 30 ............................................... ACTCCATATATCTATGGCAGAACTCCGGAT 40791 47 100.0 30 ............................................... TCTATTGCTTTCAAATGGATAGGACAAATC 40868 47 100.0 30 ............................................... CAAAAAGTGTTGTTTTTGAAAAGAGACAAA 40945 47 100.0 30 ............................................... TGCTCAAAATTACTATTATGAAAACCAACA 41022 47 100.0 30 ............................................... ACAATTGCTGTCAAATAAGCACTGAAATCT 41099 47 100.0 30 ............................................... CATTCTTGAATTCTCGCGCCTCGAAACGGC 41176 47 100.0 30 ............................................... GCAAGATTAAAACTGCCATAGGGTGTGTTG 41253 47 100.0 30 ............................................... AGCTCAATCCTCGACGCTTGCTCATTGTTA 41330 47 97.9 30 .........T..................................... TCGAATTCGTCGAGGAGGGTGTCCTGCATG 41407 47 100.0 30 ............................................... TAGTTATGGGTTGCGCAGATGCTCATTGTC 41484 47 100.0 29 ............................................... CCCCCTGCAATCCTTGAATGCCCTGAATG 41560 47 100.0 30 ............................................... TATTACCAGAGATGATTGAGTTTTTGTTCC 41637 47 100.0 30 ............................................... TAACAAAACCAAAGGGATAAACAAAAAATA 41714 47 100.0 30 ............................................... CAAAGCCGCCAACTCTTCGGCGTTCTTGCC 41791 47 100.0 30 ............................................... TCTCATTGACATAGCAATAGGTGAGGGTGA 41868 47 100.0 30 ............................................... ATGAAGCCTACAAGTTTAGGCCAACTACGG 41945 47 100.0 30 ............................................... CAGATTCAGACAAGCACCAAGCCGACGGAC 42022 47 100.0 30 ............................................... AGTTCTTCATTGAATGGTAACATAATCCCT 42099 47 100.0 30 ............................................... CGCAACCGCTTTCACCCACCACCCAATGAA 42176 47 100.0 30 ............................................... CCGTGGGAAGTCGAGGGCGAAGAAAAAGAC 42253 47 100.0 30 ............................................... CAAACGTATTGGCTGCGGGGGCGCAAGCGG 42330 47 100.0 30 ............................................... CGAGGTAGGCCAATAGGCCTCCTCTACTGG 42407 47 100.0 19 ............................................... TGAGACTACTTTGGTAAAA Deletion [42473] 42473 47 83.0 30 CAAA.AGG..T.................................... TAGGTTTCTTATTTTCCAATTTGTCAGTAT 42550 47 100.0 30 ............................................... TTTTCGCAAATTTTCTCGGCCAAGTAGCGA 42627 47 100.0 30 ............................................... TAGTTTGGCCTTTCTTTACTTTAGGTTCAG 42704 47 100.0 30 ............................................... GTGTAGTGATAAATAGCCGCTTTCTCTGTA 42781 47 100.0 30 ............................................... ATAGATGAAAGATAAACGTTTATTTTGATA 42858 47 97.9 30 .......C....................................... AAGAACGGCTGATACTCTTCGATATGGCGA 42935 45 85.1 0 .......C.........................-..TTC...-.G.. | ========== ====== ====== ====== =============================================== ============================== ================== 48 47 99.2 30 GTTGTTTTTCACAGAACAAAGATACTGATTTGTAGGCAAATCACAAC # Left flank : CCCGAAGGAGCACGTCTGATGGCACTTCGCGGTGCCGAACTGCTCATATATCCCACTGCCATCGGCTACGAAAGCAGCGACACCGTCGAAGAGCAAGAGCGTCAACGCGAAGCATGGACCACCGTACAACGCGGCCATGCCGTGACCAACGGTCTGCCCGTCATCGCGGTCAATCGCACTGGACACGAGCCCGATCCGAGCGGACAGACCAACGGCATCCGTTTCTGGGGCAGTTCTTTCGTTGCCGGTCCTCAAGGCGAGCTTCTCTATCGCGCCGAGAAAGACGAAGAAACGGTCAAAGTCGTAGACATTGATCTCCGCCGATCCGAAAACGTGCGTCGTTGGTGGCCTTTCCTACGCGACCGCCGCATCGAAGAGTTTTCTGGGCTTTCTCGCCGTTTTTTAGATTAAATGGTCGTTTCCGGGTCAGTAGATAAAGCTCTTTTTTAATTCAACTATTACTTCTAAATAAAAGATTATCAATAAGAAATAGATGATAA # Right flank : ATTTGGAGTGATGCGGTTCTAAAAAGAAGAAAACCGCTGAACAAATTGTATATTTGAATTAGCACAAACAAATATGCAGCTATGAACAGCAGTTTTCTATATCATGCTTGGGGATTGTATCACCACAAGTGTCTACGAGAGGAATACAAAGGTAAT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTTTTCACAGAACAAAGATACTGATTTGTAGGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //