Array 1 5385-4578 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHND010000037.1 Serratia marcescens strain B4 Contig_37_55.6689, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5384 28 96.4 32 .............C.............. AGATGAAGGGCCACCGGCTTGATAACCCTCTT 5324 28 96.4 32 .............C.............. TTCATGGCCGGAACCTGTTATTTTAAGGAAGT 5264 28 100.0 32 ............................ GCTGGTGGCCGACATTTTGCCGATTGGCACCA 5204 28 100.0 32 ............................ AATGCCAGCGATCTGTCTACTGCGTCGGGTAA 5144 28 100.0 32 ............................ AGCAGGGCGAGAATGGTTTCCGGTGTTGCGTT 5084 28 100.0 32 ............................ GGCTGCGCCTCCCGGTTAGCCGCACGCACCAT 5024 28 100.0 32 ............................ CGGGGCTATTGCGCAGTCTACTCAAAATAACG 4964 28 96.4 32 A........................... GGTTACCCGGTACGTGCGGCACAGCAATAAAG 4904 28 100.0 33 ............................ AAAGCAGAAAAGAAATGGCTGGACGAACTGCAA 4843 28 100.0 31 ............................ TTGACCGCCAGGGACACGAGCGAATCGCGTA 4784 28 100.0 32 ............................ TTTGCATCGTCCGGCAGGGATTCACTGTCGAG 4724 28 100.0 32 ............................ ACTGACGCAGCACTTGCAGCTATCCAGGCGCA 4664 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 4604 27 82.1 0 .........T...C.A....T..-.... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGGCTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 15157-13866 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHND010000037.1 Serratia marcescens strain B4 Contig_37_55.6689, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15156 28 100.0 32 ............................ GCGACAATTACTCGTTCGAAGTGCATTTTCAT 15096 28 100.0 32 ............................ TGACGGAGACTATCTCACAGAGGAAATGAGCC 15036 28 100.0 32 ............................ GCGACGACATGGGGCCAGAAAAAACCACCATT 14976 28 100.0 32 ............................ ATGGGAAAAGCACCACGCCCTAATGCGCGTCT 14916 28 100.0 32 ............................ TTAACAGGGCGGAAAAACGCGGTCAAGCGTAA 14856 28 100.0 32 ............................ GCCCTGGGCGGAGGTAGCCACAAAGGCGCATA 14796 28 100.0 32 ............................ TGGGTGATGGCGTTGACATCTTGCAGCAGCAG 14736 28 100.0 32 ............................ GCAGGGTCATGCATCGCATTATTGCCGTTGAA 14676 28 100.0 32 ............................ GGCAGGCAGTAAGGCGGCGAAGAAAGAAAAGA 14616 28 100.0 32 ............................ ACGCGGGAACCGTTCACGGCTTCTTTTGCTTT 14556 28 100.0 32 ............................ AATATGTCGGAGCTTACAACACGCTCCACAAC 14496 28 100.0 32 ............................ CTTCACGTCCAGCGTAAGGCCGTCAGACCAGT 14436 28 100.0 32 ............................ CAGTGGACGTACTGTTACATCGACTCGAGAAA 14376 28 100.0 32 ............................ AGATGGCGAGCGAACTGATACATGATACCTGT 14316 28 100.0 32 ............................ GATATATTCAGAGGGACCCGTTCTATCACCCC 14256 28 100.0 32 ............................ TGCAGGCCCAGCAATTCCATAACGCTGCGCAC 14196 28 100.0 32 ............................ GTGAAGCGACATTCTCCGGCAACGTGGACGCC 14136 28 100.0 32 ............................ CTCAGCGCGCACGATGAAGTTAAACTCATCGC 14076 28 100.0 32 ............................ TTTGACTACAGCATAGCAATGTAAGGAACCCA 14016 28 100.0 32 ............................ AGAGAGAAGATCTCTAAGGGATCGAGTGTTTA 13956 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 13896 28 96.4 0 ....................A....... | G,A,A [13869,13873,13875] ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGCCTGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //